Experiment: McCas_formate_complete Anhydrotetracycline 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03730 and MMP_RS03735 are separated by 431 nucleotides MMP_RS03735 and MMP_RS03740 overlap by 1 nucleotides MMP_RS03740 and MMP_RS03745 are separated by 10 nucleotides
MMP_RS03730: MMP_RS03730 - ABC transporter substrate-binding protein, at 705,074 to 705,820
_RS03730
MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988
_RS03735
MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554
_RS03740
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1 at 705.272 kb on + strand, within MMP_RS03730 at 705.306 kb on + strand, within MMP_RS03730 at 705.315 kb on + strand, within MMP_RS03730 at 705.407 kb on - strand, within MMP_RS03730 at 705.419 kb on - strand, within MMP_RS03730 at 705.420 kb on + strand, within MMP_RS03730 at 705.560 kb on - strand, within MMP_RS03730 at 705.565 kb on - strand, within MMP_RS03730 at 705.626 kb on - strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.682 kb on - strand, within MMP_RS03730 at 705.689 kb on + strand, within MMP_RS03730 at 705.732 kb on - strand, within MMP_RS03730 at 705.739 kb on - strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.763 kb on - strand at 705.763 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.768 kb on + strand at 705.768 kb on + strand at 705.798 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.877 kb on + strand at 705.881 kb on + strand at 705.881 kb on + strand at 705.886 kb on - strand at 705.907 kb on + strand at 705.910 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.913 kb on - strand at 706.009 kb on - strand at 706.011 kb on - strand at 706.013 kb on - strand at 706.016 kb on + strand at 706.068 kb on - strand at 706.113 kb on - strand at 706.114 kb on + strand at 706.119 kb on - strand at 706.120 kb on + strand at 706.120 kb on + strand at 706.138 kb on + strand at 706.138 kb on + strand at 706.171 kb on - strand at 706.172 kb on + strand at 706.173 kb on - strand at 706.531 kb on + strand, within MMP_RS03735 at 706.728 kb on - strand, within MMP_RS03735 at 706.788 kb on + strand, within MMP_RS03735 at 706.821 kb on + strand, within MMP_RS03735 at 706.944 kb on - strand, within MMP_RS03735 at 706.945 kb on + strand, within MMP_RS03735 at 706.947 kb on - strand, within MMP_RS03735 at 706.963 kb on - strand, within MMP_RS03735 at 706.963 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.966 kb on + strand, within MMP_RS03735 at 707.079 kb on + strand, within MMP_RS03735 at 707.302 kb on + strand, within MMP_RS03735 at 707.392 kb on + strand, within MMP_RS03735 at 707.969 kb on - strand at 707.969 kb on - strand at 707.970 kb on + strand at 707.970 kb on + strand at 707.981 kb on - strand at 708.133 kb on + strand, within MMP_RS03740 at 708.226 kb on + strand, within MMP_RS03740 at 708.263 kb on + strand, within MMP_RS03740 at 708.292 kb on - strand, within MMP_RS03740 at 708.413 kb on + strand, within MMP_RS03740 at 708.553 kb on + strand at 708.582 kb on - strand at 708.624 kb on - strand at 708.646 kb on + strand at 708.656 kb on + strand at 708.750 kb on - strand, within MMP_RS03745 at 708.792 kb on + strand, within MMP_RS03745 at 708.864 kb on + strand, within MMP_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Anhydrotetracycline 0.05 mM remove 705,272 + MMP_RS03730 0.27 +0.0 705,306 + MMP_RS03730 0.31 -0.3 705,315 + MMP_RS03730 0.32 -0.7 705,407 - MMP_RS03730 0.45 -0.0 705,419 - MMP_RS03730 0.46 -0.1 705,420 + MMP_RS03730 0.46 +1.0 705,560 - MMP_RS03730 0.65 +0.6 705,565 - MMP_RS03730 0.66 +0.2 705,626 - MMP_RS03730 0.74 +0.5 705,642 + MMP_RS03730 0.76 +0.5 705,642 + MMP_RS03730 0.76 +0.3 705,682 - MMP_RS03730 0.81 +0.8 705,689 + MMP_RS03730 0.82 +0.4 705,732 - MMP_RS03730 0.88 +0.4 705,739 - MMP_RS03730 0.89 +1.1 705,745 + MMP_RS03730 0.90 -0.2 705,745 + MMP_RS03730 0.90 +0.2 705,745 + MMP_RS03730 0.90 -0.4 705,745 + MMP_RS03730 0.90 -0.2 705,745 + MMP_RS03730 0.90 +0.3 705,745 + MMP_RS03730 0.90 -0.4 705,763 - -0.6 705,763 - -0.3 705,767 - -0.1 705,767 - +0.4 705,767 - -0.8 705,767 - +0.2 705,767 - +0.4 705,768 + -0.1 705,768 + -1.1 705,798 - -0.2 705,876 - +0.0 705,876 - -0.2 705,876 - +0.1 705,877 + +0.4 705,881 + +1.4 705,881 + +0.6 705,886 - +0.2 705,907 + -0.7 705,910 + +0.2 705,911 - +1.1 705,911 - +0.5 705,911 - -0.2 705,912 + +0.4 705,912 + +1.0 705,912 + -1.1 705,913 - -0.3 706,009 - +0.4 706,011 - -0.1 706,013 - -0.0 706,016 + +0.7 706,068 - -1.0 706,113 - +0.6 706,114 + -1.8 706,119 - +0.1 706,120 + +0.7 706,120 + -0.2 706,138 + +0.9 706,138 + -0.1 706,171 - +0.2 706,172 + +0.5 706,173 - -0.2 706,531 + MMP_RS03735 0.16 +0.7 706,728 - MMP_RS03735 0.27 +1.0 706,788 + MMP_RS03735 0.31 +0.7 706,821 + MMP_RS03735 0.33 -0.4 706,944 - MMP_RS03735 0.40 +1.1 706,945 + MMP_RS03735 0.40 +0.2 706,947 - MMP_RS03735 0.40 +0.1 706,963 - MMP_RS03735 0.41 -0.8 706,963 - MMP_RS03735 0.41 -0.1 706,965 - MMP_RS03735 0.41 -0.1 706,965 - MMP_RS03735 0.41 +0.3 706,965 - MMP_RS03735 0.41 -0.8 706,965 - MMP_RS03735 0.41 +0.7 706,965 - MMP_RS03735 0.41 +1.3 706,965 - MMP_RS03735 0.41 +1.1 706,965 - MMP_RS03735 0.41 +0.2 706,966 + MMP_RS03735 0.41 +0.2 707,079 + MMP_RS03735 0.48 +1.6 707,302 + MMP_RS03735 0.60 +0.9 707,392 + MMP_RS03735 0.66 -0.0 707,969 - +0.3 707,969 - +0.0 707,970 + +0.3 707,970 + +0.2 707,981 - -0.2 708,133 + MMP_RS03740 0.26 +1.1 708,226 + MMP_RS03740 0.42 -0.6 708,263 + MMP_RS03740 0.49 -0.1 708,292 - MMP_RS03740 0.54 +0.7 708,413 + MMP_RS03740 0.75 -0.9 708,553 + +0.1 708,582 - +0.4 708,624 - -0.8 708,646 + -1.2 708,656 + +1.0 708,750 - MMP_RS03745 0.14 +0.0 708,792 + MMP_RS03745 0.17 -1.0 708,864 + MMP_RS03745 0.23 -0.6
Or see this region's nucleotide sequence