Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00760

Experiment: McCas_formate_complete Anhydrotetracycline 0.05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00755 and MMP_RS00760 are separated by 49 nucleotidesMMP_RS00760 and MMP_RS00765 are separated by 72 nucleotides MMP_RS00755: MMP_RS00755 - tyrosine decarboxylase MfnA, at 137,305 to 138,459 _RS00755 MMP_RS00760: MMP_RS00760 - branched-chain-amino-acid transaminase, at 138,509 to 139,372 _RS00760 MMP_RS00765: MMP_RS00765 - IMP dehydrogenase, at 139,445 to 140,947 _RS00765 Position (kb) 138 139 140Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 137.522 kb on - strandat 137.551 kb on + strandat 137.829 kb on - strandat 137.933 kb on - strandat 137.934 kb on + strandat 137.943 kb on - strandat 138.458 kb on + strandat 138.464 kb on - strandat 138.564 kb on - strandat 138.660 kb on - strand, within MMP_RS00760at 138.753 kb on - strand, within MMP_RS00760at 138.753 kb on - strand, within MMP_RS00760at 138.754 kb on + strand, within MMP_RS00760at 138.764 kb on - strand, within MMP_RS00760at 138.765 kb on + strand, within MMP_RS00760at 138.768 kb on - strand, within MMP_RS00760at 138.769 kb on + strand, within MMP_RS00760at 138.769 kb on + strand, within MMP_RS00760at 138.895 kb on + strand, within MMP_RS00760at 139.062 kb on - strand, within MMP_RS00760at 139.072 kb on - strand, within MMP_RS00760at 139.081 kb on - strand, within MMP_RS00760at 139.082 kb on + strand, within MMP_RS00760at 139.371 kb on + strandat 139.433 kb on - strandat 139.434 kb on + strandat 139.446 kb on - strandat 139.625 kb on - strandat 140.291 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Anhydrotetracycline 0.05 mM
remove
137,522 - -1.4
137,551 + -2.7
137,829 - -1.8
137,933 - -2.0
137,934 + -2.3
137,943 - -3.0
138,458 + -0.5
138,464 - -0.3
138,564 - +1.4
138,660 - MMP_RS00760 0.17 +1.8
138,753 - MMP_RS00760 0.28 +0.7
138,753 - MMP_RS00760 0.28 +0.7
138,754 + MMP_RS00760 0.28 +0.0
138,764 - MMP_RS00760 0.30 +0.2
138,765 + MMP_RS00760 0.30 +0.5
138,768 - MMP_RS00760 0.30 +1.0
138,769 + MMP_RS00760 0.30 +0.5
138,769 + MMP_RS00760 0.30 +0.7
138,895 + MMP_RS00760 0.45 -0.7
139,062 - MMP_RS00760 0.64 +0.5
139,072 - MMP_RS00760 0.65 +0.3
139,081 - MMP_RS00760 0.66 +0.4
139,082 + MMP_RS00760 0.66 +0.7
139,371 + +0.2
139,433 - +0.8
139,434 + +0.7
139,446 - -0.5
139,625 - -3.1
140,291 + +0.3

Or see this region's nucleotide sequence