Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14965

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
3,308,425	+		LRK54_RS14960	0.26	-0.6
3,308,425	+		LRK54_RS14960	0.26	+1.1
3,308,425	+		LRK54_RS14960	0.26	+1.1
3,308,425	+		LRK54_RS14960	0.26	+0.3
3,308,425	+		LRK54_RS14960	0.26	-0.2
3,308,425	+		LRK54_RS14960	0.26	+0.1
3,308,425	+		LRK54_RS14960	0.26	+0.2
3,308,426	-		LRK54_RS14960	0.26	-1.6
3,308,426	-		LRK54_RS14960	0.26	-3.0
3,308,426	-		LRK54_RS14960	0.26	-1.6
3,308,426	-		LRK54_RS14960	0.26	-1.5
3,308,426	-		LRK54_RS14960	0.26	+0.1
3,308,507	+		LRK54_RS14960	0.34	-0.7
3,308,507	+		LRK54_RS14960	0.34	-2.1
3,308,507	+		LRK54_RS14960	0.34	+0.1
3,308,508	-		LRK54_RS14960	0.34	-0.2
3,308,508	-		LRK54_RS14960	0.34	+0.0
3,308,546	+		LRK54_RS14960	0.38	+0.0
3,308,546	+		LRK54_RS14960	0.38	+0.3
3,308,547	-		LRK54_RS14960	0.38	+0.1
3,308,575	+		LRK54_RS14960	0.40	+1.5
3,308,575	+		LRK54_RS14960	0.40	-1.9
3,308,575	+		LRK54_RS14960	0.40	-1.5
3,308,575	+		LRK54_RS14960	0.40	-1.2
3,308,576	-		LRK54_RS14960	0.40	+0.5
3,308,576	-		LRK54_RS14960	0.40	-2.5
3,308,576	-		LRK54_RS14960	0.40	-1.2
3,308,576	-		LRK54_RS14960	0.40	+0.1
3,308,576	-		LRK54_RS14960	0.40	-0.5
3,308,576	-		LRK54_RS14960	0.40	+0.5
3,308,576	-		LRK54_RS14960	0.40	-0.5
3,308,591	+		LRK54_RS14960	0.42	-1.7
3,308,591	+		LRK54_RS14960	0.42	+0.1
3,308,591	+		LRK54_RS14960	0.42	-1.3
3,308,591	+		LRK54_RS14960	0.42	-2.4
3,308,591	+		LRK54_RS14960	0.42	-1.2
3,308,591	+		LRK54_RS14960	0.42	-1.2
3,308,591	+		LRK54_RS14960	0.42	+4.1
3,308,591	+		LRK54_RS14960	0.42	+2.1
3,308,592	-		LRK54_RS14960	0.42	-1.0
3,308,635	+		LRK54_RS14960	0.46	-1.0
3,308,636	-		LRK54_RS14960	0.46	-0.7
3,308,648	+		LRK54_RS14960	0.47	-0.5
3,308,648	+		LRK54_RS14960	0.47	-1.5
3,308,649	-		LRK54_RS14960	0.47	-0.5
3,308,649	-		LRK54_RS14960	0.47	-1.1
3,308,649	-		LRK54_RS14960	0.47	+2.8
3,308,704	+		LRK54_RS14960	0.53	+1.7
3,308,704	+		LRK54_RS14960	0.53	+2.4
3,308,704	+		LRK54_RS14960	0.53	-1.5
3,308,704	+		LRK54_RS14960	0.53	-0.5
3,308,738	+		LRK54_RS14960	0.56	+0.9
3,308,738	+		LRK54_RS14960	0.56	-2.0
3,308,738	+		LRK54_RS14960	0.56	+0.3
3,308,744	+		LRK54_RS14960	0.57	+0.6
3,308,930	+		LRK54_RS14960	0.75	+0.5
3,308,940	+		LRK54_RS14960	0.76	-1.8
3,308,940	+		LRK54_RS14960	0.76	-1.5
3,308,980	+		LRK54_RS14960	0.79	-1.3
3,308,980	+		LRK54_RS14960	0.79	-1.6
3,308,981	-		LRK54_RS14960	0.79	-2.0
3,308,981	-		LRK54_RS14960	0.79	-0.7
3,308,984	+		LRK54_RS14960	0.80	-2.6
3,308,984	+		LRK54_RS14960	0.80	+0.6
3,308,984	+		LRK54_RS14960	0.80	-0.2
3,308,985	-		LRK54_RS14960	0.80	-0.5
3,308,985	-		LRK54_RS14960	0.80	-2.0
3,308,985	-		LRK54_RS14960	0.80	-1.3
3,308,985	-		LRK54_RS14960	0.80	+0.2
3,308,985	-		LRK54_RS14960	0.80	-1.1
3,309,047	+		LRK54_RS14960	0.86	+1.1
3,309,079	-		LRK54_RS14960	0.89	+0.4
3,309,107	+				+3.1
3,309,167	+				-0.3
3,309,216	+				-2.2
3,309,318	+				-0.1
3,309,324	+				+0.6
3,309,324	+				-1.2
3,309,325	-				-1.5
3,309,328	+				+0.5
3,309,329	-				-0.3
3,309,329	-				-1.0
3,309,388	+		LRK54_RS14965	0.11	+0.5
3,309,518	-		LRK54_RS14965	0.45	-0.6
3,309,534	+		LRK54_RS14965	0.49	-1.8
3,309,534	+		LRK54_RS14965	0.49	+0.3
3,309,534	+		LRK54_RS14965	0.49	-0.8
3,309,534	+		LRK54_RS14965	0.49	+1.0
3,309,535	-		LRK54_RS14965	0.49	-0.4
3,309,535	-		LRK54_RS14965	0.49	-1.9
3,309,535	-		LRK54_RS14965	0.49	-0.2
3,309,535	-		LRK54_RS14965	0.49	-0.5
3,309,536	+		LRK54_RS14965	0.49	-2.4
3,309,536	+		LRK54_RS14965	0.49	-0.9
3,309,537	-		LRK54_RS14965	0.50	+1.5
3,309,537	-		LRK54_RS14965	0.50	+1.1
3,309,537	-		LRK54_RS14965	0.50	-2.2
3,309,537	-		LRK54_RS14965	0.50	-1.4
3,309,616	+		LRK54_RS14965	0.70	+1.1
3,309,616	+		LRK54_RS14965	0.70	-0.4
3,309,616	+		LRK54_RS14965	0.70	-1.7
3,309,616	+		LRK54_RS14965	0.70	-1.1
3,309,617	-		LRK54_RS14965	0.70	+2.7
3,309,617	-		LRK54_RS14965	0.70	-2.3
3,309,617	-		LRK54_RS14965	0.70	+1.3
3,309,617	-		LRK54_RS14965	0.70	-1.9
3,309,634	+		LRK54_RS14965	0.75	-0.2
3,309,635	+		LRK54_RS14965	0.75	+0.9
3,309,635	+		LRK54_RS14965	0.75	-2.1
3,309,635	+		LRK54_RS14965	0.75	+1.1
3,309,635	+		LRK54_RS14965	0.75	-1.4
3,309,635	+		LRK54_RS14965	0.75	-2.4
3,309,635	+		LRK54_RS14965	0.75	+3.1
3,309,635	+		LRK54_RS14965	0.75	-1.4
3,309,635	+		LRK54_RS14965	0.75	-1.8
3,309,636	-		LRK54_RS14965	0.75	-2.6
3,309,636	-		LRK54_RS14965	0.75	+0.8
3,309,636	-		LRK54_RS14965	0.75	-0.7
3,309,636	-		LRK54_RS14965	0.75	+0.3
3,309,636	-		LRK54_RS14965	0.75	-1.6
3,309,648	-		LRK54_RS14965	0.78	+0.2
3,309,668	+		LRK54_RS14965	0.83	+1.7
3,309,669	-		LRK54_RS14965	0.84	+0.3
3,309,669	-		LRK54_RS14965	0.84	+0.7
3,309,669	-		LRK54_RS14965	0.84	+0.9
3,309,669	-		LRK54_RS14965	0.84	-0.2
3,309,669	-		LRK54_RS14965	0.84	-1.2
3,309,816	+				-0.9
3,309,816	+				-1.2
3,309,817	-				+0.8
3,309,817	-				+1.8
3,309,817	-				-1.1
3,309,817	-				-0.8
3,309,847	-				+0.5
3,309,847	-				-0.6
3,309,847	-				-0.4
3,309,877	+				-0.8
3,309,877	+				-0.4
3,309,877	+				+0.1
3,309,877	+				+0.3
3,309,877	+				-0.9
3,309,877	+				-0.6
3,309,877	+				-0.4
3,309,877	+				-1.9
3,309,878	-				+0.4
3,309,878	-				-0.1
3,309,878	-				-1.4
3,309,878	-				+0.0
3,309,902	+				+1.9
3,309,902	+				+1.1
3,309,902	+				+3.1
3,309,902	+				-0.3
3,309,903	-				-0.7
3,309,903	-				-1.7
3,309,903	-				+0.6
3,309,903	-				-2.1
3,309,903	-				-1.0
3,310,038	+		LRK54_RS14970	0.20	-0.2
3,310,038	+		LRK54_RS14970	0.20	-0.4
3,310,039	-		LRK54_RS14970	0.21	-0.2
3,310,039	-		LRK54_RS14970	0.21	-3.4
3,310,095	+		LRK54_RS14970	0.32	-0.6
3,310,323	+		LRK54_RS14970	0.80	+1.4
3,310,323	+		LRK54_RS14970	0.80	-0.3
3,310,323	+		LRK54_RS14970	0.80	+0.3
3,310,323	+		LRK54_RS14970	0.80	-1.1
3,310,323	+		LRK54_RS14970	0.80	-0.3
3,310,323	+		LRK54_RS14970	0.80	+3.1
3,310,323	+		LRK54_RS14970	0.80	+1.5
3,310,323	+		LRK54_RS14970	0.80	+1.5
3,310,323	+		LRK54_RS14970	0.80	-0.1
3,310,323	+		LRK54_RS14970	0.80	-1.3
3,310,324	-		LRK54_RS14970	0.80	+0.6
3,310,324	-		LRK54_RS14970	0.80	-0.7
3,310,324	-		LRK54_RS14970	0.80	-0.3
3,310,324	-		LRK54_RS14970	0.80	+1.8
3,310,324	-		LRK54_RS14970	0.80	-0.7
3,310,324	-		LRK54_RS14970	0.80	-1.5
3,310,324	-		LRK54_RS14970	0.80	-1.5
3,310,324	-		LRK54_RS14970	0.80	+0.8
3,310,324	-		LRK54_RS14970	0.80	-2.3
3,310,324	-		LRK54_RS14970	0.80	+0.1
3,310,324	-		LRK54_RS14970	0.80	+1.5
3,310,324	-		LRK54_RS14970	0.80	-0.0
3,310,398	+				-1.3
3,310,398	+				-1.0
3,310,398	+				+0.4
3,310,398	+				-0.4
3,310,398	+				+0.2
3,310,398	+				+0.3
3,310,399	-				+0.8
3,310,399	-				-1.2
3,310,399	-				-1.1
3,310,399	-				-0.1
3,310,399	-				-0.9
3,310,399	-				-0.5
3,310,399	-				+0.0
3,310,399	-				+1.4
3,310,399	-				+0.8
3,310,399	-				+0.5
3,310,399	-				+3.1
3,310,399	-				-2.7
3,310,408	+				+1.1
3,310,408	+				-0.1
3,310,408	+				+0.1
3,310,408	+				-0.6
3,310,409	-				-0.8
3,310,409	-				+0.4
3,310,409	-				+1.5
3,310,409	-				-0.5
3,310,409	-				-1.5
3,310,409	-				+2.1
3,310,409	-				-2.2
3,310,409	-				-0.7
3,310,480	+				+0.3
3,310,570	+				-0.1
3,310,571	-				-1.3
3,310,729	+				+1.7
3,310,729	+				-0.4
3,310,729	+				-1.8
3,310,729	+				+0.2
3,310,730	-				-1.7