Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS13700 and LRK54_RS13705 are separated by 40 nucleotides LRK54_RS13705 and LRK54_RS13710 are separated by 14 nucleotides LRK54_RS13710 and LRK54_RS13715 are separated by 117 nucleotides
LRK54_RS13700: LRK54_RS13700 - magnesium and cobalt transport protein CorA, at 3,060,376 to 3,061,392
_RS13700
LRK54_RS13705: LRK54_RS13705 - DUF4105 domain-containing protein, at 3,061,433 to 3,062,650
_RS13705
LRK54_RS13710: LRK54_RS13710 - CBS domain-containing protein, at 3,062,665 to 3,063,504
_RS13710
LRK54_RS13715: LRK54_RS13715 - rRNA maturation RNase YbeY, at 3,063,622 to 3,064,083
_RS13715
Position (kb)
3061
3062
3063 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3060.453 kb on - strand at 3060.453 kb on - strand at 3060.500 kb on + strand, within LRK54_RS13700 at 3060.668 kb on + strand, within LRK54_RS13700 at 3060.668 kb on + strand, within LRK54_RS13700 at 3060.668 kb on + strand, within LRK54_RS13700 at 3060.669 kb on - strand, within LRK54_RS13700 at 3060.669 kb on - strand, within LRK54_RS13700 at 3060.683 kb on + strand, within LRK54_RS13700 at 3060.683 kb on + strand, within LRK54_RS13700 at 3060.683 kb on + strand, within LRK54_RS13700 at 3060.683 kb on + strand, within LRK54_RS13700 at 3060.683 kb on + strand, within LRK54_RS13700 at 3060.684 kb on - strand, within LRK54_RS13700 at 3060.684 kb on - strand, within LRK54_RS13700 at 3060.684 kb on - strand, within LRK54_RS13700 at 3060.684 kb on - strand, within LRK54_RS13700 at 3060.684 kb on - strand, within LRK54_RS13700 at 3060.704 kb on - strand, within LRK54_RS13700 at 3060.797 kb on + strand, within LRK54_RS13700 at 3060.797 kb on + strand, within LRK54_RS13700 at 3060.797 kb on + strand, within LRK54_RS13700 at 3060.797 kb on + strand, within LRK54_RS13700 at 3060.797 kb on + strand, within LRK54_RS13700 at 3060.798 kb on - strand, within LRK54_RS13700 at 3060.798 kb on - strand, within LRK54_RS13700 at 3060.798 kb on - strand, within LRK54_RS13700 at 3060.798 kb on - strand, within LRK54_RS13700 at 3060.798 kb on - strand, within LRK54_RS13700 at 3060.923 kb on + strand, within LRK54_RS13700 at 3060.923 kb on + strand, within LRK54_RS13700 at 3060.923 kb on + strand, within LRK54_RS13700 at 3060.923 kb on + strand, within LRK54_RS13700 at 3060.923 kb on + strand, within LRK54_RS13700 at 3060.923 kb on + strand, within LRK54_RS13700 at 3060.924 kb on - strand, within LRK54_RS13700 at 3060.924 kb on - strand, within LRK54_RS13700 at 3060.924 kb on - strand, within LRK54_RS13700 at 3060.924 kb on - strand, within LRK54_RS13700 at 3060.924 kb on - strand, within LRK54_RS13700 at 3060.932 kb on + strand, within LRK54_RS13700 at 3060.932 kb on + strand, within LRK54_RS13700 at 3060.933 kb on - strand, within LRK54_RS13700 at 3060.933 kb on - strand, within LRK54_RS13700 at 3060.992 kb on + strand, within LRK54_RS13700 at 3060.993 kb on - strand, within LRK54_RS13700 at 3060.993 kb on - strand, within LRK54_RS13700 at 3060.993 kb on - strand, within LRK54_RS13700 at 3060.993 kb on - strand, within LRK54_RS13700 at 3060.993 kb on - strand, within LRK54_RS13700 at 3061.028 kb on + strand, within LRK54_RS13700 at 3061.121 kb on + strand, within LRK54_RS13700 at 3061.122 kb on - strand, within LRK54_RS13700 at 3061.122 kb on - strand, within LRK54_RS13700 at 3061.229 kb on + strand, within LRK54_RS13700 at 3061.230 kb on - strand, within LRK54_RS13700 at 3061.230 kb on - strand, within LRK54_RS13700 at 3061.230 kb on - strand, within LRK54_RS13700 at 3061.230 kb on - strand, within LRK54_RS13700 at 3061.230 kb on - strand, within LRK54_RS13700 at 3061.230 kb on - strand, within LRK54_RS13700 at 3061.322 kb on + strand at 3062.666 kb on + strand at 3062.666 kb on + strand at 3062.667 kb on - strand at 3062.667 kb on - strand at 3062.729 kb on + strand at 3062.729 kb on + strand at 3062.729 kb on + strand at 3062.729 kb on + strand at 3062.729 kb on + strand at 3062.729 kb on + strand at 3062.729 kb on + strand at 3062.730 kb on - strand at 3062.730 kb on - strand at 3062.730 kb on - strand at 3062.807 kb on + strand, within LRK54_RS13710 at 3062.807 kb on + strand, within LRK54_RS13710 at 3062.808 kb on - strand, within LRK54_RS13710 at 3062.808 kb on - strand, within LRK54_RS13710 at 3062.808 kb on - strand, within LRK54_RS13710 at 3062.808 kb on - strand, within LRK54_RS13710 at 3062.808 kb on - strand, within LRK54_RS13710 at 3063.003 kb on - strand, within LRK54_RS13710 at 3063.140 kb on + strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.141 kb on - strand, within LRK54_RS13710 at 3063.296 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.298 kb on + strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.299 kb on - strand, within LRK54_RS13710 at 3063.484 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.506 kb on - strand at 3063.548 kb on + strand at 3063.548 kb on + strand at 3063.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 3,060,453 - +0.7 3,060,453 - -0.1 3,060,500 + LRK54_RS13700 0.12 +0.4 3,060,668 + LRK54_RS13700 0.29 -1.1 3,060,668 + LRK54_RS13700 0.29 +0.3 3,060,668 + LRK54_RS13700 0.29 -1.2 3,060,669 - LRK54_RS13700 0.29 -1.1 3,060,669 - LRK54_RS13700 0.29 +3.0 3,060,683 + LRK54_RS13700 0.30 +1.0 3,060,683 + LRK54_RS13700 0.30 +0.8 3,060,683 + LRK54_RS13700 0.30 -0.0 3,060,683 + LRK54_RS13700 0.30 +2.0 3,060,683 + LRK54_RS13700 0.30 +0.2 3,060,684 - LRK54_RS13700 0.30 -1.4 3,060,684 - LRK54_RS13700 0.30 +0.7 3,060,684 - LRK54_RS13700 0.30 +0.9 3,060,684 - LRK54_RS13700 0.30 +0.3 3,060,684 - LRK54_RS13700 0.30 +1.4 3,060,704 - LRK54_RS13700 0.32 -0.9 3,060,797 + LRK54_RS13700 0.41 -1.1 3,060,797 + LRK54_RS13700 0.41 +2.0 3,060,797 + LRK54_RS13700 0.41 +2.4 3,060,797 + LRK54_RS13700 0.41 -0.1 3,060,797 + LRK54_RS13700 0.41 +0.5 3,060,798 - LRK54_RS13700 0.41 -1.6 3,060,798 - LRK54_RS13700 0.41 -0.2 3,060,798 - LRK54_RS13700 0.41 -0.3 3,060,798 - LRK54_RS13700 0.41 -0.1 3,060,798 - LRK54_RS13700 0.41 -0.4 3,060,923 + LRK54_RS13700 0.54 +0.1 3,060,923 + LRK54_RS13700 0.54 -0.1 3,060,923 + LRK54_RS13700 0.54 +0.9 3,060,923 + LRK54_RS13700 0.54 -2.7 3,060,923 + LRK54_RS13700 0.54 -0.2 3,060,923 + LRK54_RS13700 0.54 +1.6 3,060,924 - LRK54_RS13700 0.54 -1.7 3,060,924 - LRK54_RS13700 0.54 -0.0 3,060,924 - LRK54_RS13700 0.54 -1.0 3,060,924 - LRK54_RS13700 0.54 -0.1 3,060,924 - LRK54_RS13700 0.54 -0.8 3,060,932 + LRK54_RS13700 0.55 +0.8 3,060,932 + LRK54_RS13700 0.55 -0.1 3,060,933 - LRK54_RS13700 0.55 -0.6 3,060,933 - LRK54_RS13700 0.55 +1.0 3,060,992 + LRK54_RS13700 0.61 +0.1 3,060,993 - LRK54_RS13700 0.61 +0.7 3,060,993 - LRK54_RS13700 0.61 -2.0 3,060,993 - LRK54_RS13700 0.61 -0.3 3,060,993 - LRK54_RS13700 0.61 -1.4 3,060,993 - LRK54_RS13700 0.61 -3.0 3,061,028 + LRK54_RS13700 0.64 -2.0 3,061,121 + LRK54_RS13700 0.73 -0.3 3,061,122 - LRK54_RS13700 0.73 -0.3 3,061,122 - LRK54_RS13700 0.73 -1.6 3,061,229 + LRK54_RS13700 0.84 -0.1 3,061,230 - LRK54_RS13700 0.84 +0.1 3,061,230 - LRK54_RS13700 0.84 +0.2 3,061,230 - LRK54_RS13700 0.84 +2.2 3,061,230 - LRK54_RS13700 0.84 -0.5 3,061,230 - LRK54_RS13700 0.84 +2.0 3,061,230 - LRK54_RS13700 0.84 -3.4 3,061,322 + +2.0 3,062,666 + +0.2 3,062,666 + +0.4 3,062,667 - -2.1 3,062,667 - -0.7 3,062,729 + +3.8 3,062,729 + +4.1 3,062,729 + +4.1 3,062,729 + +4.5 3,062,729 + +3.6 3,062,729 + +2.3 3,062,729 + +2.2 3,062,730 - +2.0 3,062,730 - +3.4 3,062,730 - +4.2 3,062,807 + LRK54_RS13710 0.17 +3.9 3,062,807 + LRK54_RS13710 0.17 +3.4 3,062,808 - LRK54_RS13710 0.17 +3.4 3,062,808 - LRK54_RS13710 0.17 +3.7 3,062,808 - LRK54_RS13710 0.17 +2.4 3,062,808 - LRK54_RS13710 0.17 +4.3 3,062,808 - LRK54_RS13710 0.17 +2.1 3,063,003 - LRK54_RS13710 0.40 +2.5 3,063,140 + LRK54_RS13710 0.57 +1.4 3,063,141 - LRK54_RS13710 0.57 +2.3 3,063,141 - LRK54_RS13710 0.57 +3.8 3,063,141 - LRK54_RS13710 0.57 +4.8 3,063,141 - LRK54_RS13710 0.57 +3.9 3,063,141 - LRK54_RS13710 0.57 +3.9 3,063,141 - LRK54_RS13710 0.57 +3.4 3,063,141 - LRK54_RS13710 0.57 +4.7 3,063,141 - LRK54_RS13710 0.57 +1.0 3,063,296 + LRK54_RS13710 0.75 +1.9 3,063,298 + LRK54_RS13710 0.75 +4.0 3,063,298 + LRK54_RS13710 0.75 +4.0 3,063,298 + LRK54_RS13710 0.75 +4.4 3,063,298 + LRK54_RS13710 0.75 +2.6 3,063,298 + LRK54_RS13710 0.75 +0.7 3,063,298 + LRK54_RS13710 0.75 +3.2 3,063,298 + LRK54_RS13710 0.75 +3.6 3,063,298 + LRK54_RS13710 0.75 +4.0 3,063,298 + LRK54_RS13710 0.75 +4.4 3,063,298 + LRK54_RS13710 0.75 +2.4 3,063,298 + LRK54_RS13710 0.75 +3.7 3,063,298 + LRK54_RS13710 0.75 +2.8 3,063,298 + LRK54_RS13710 0.75 +1.4 3,063,299 - LRK54_RS13710 0.75 +1.4 3,063,299 - LRK54_RS13710 0.75 +2.0 3,063,299 - LRK54_RS13710 0.75 -0.6 3,063,299 - LRK54_RS13710 0.75 +4.5 3,063,299 - LRK54_RS13710 0.75 -0.4 3,063,299 - LRK54_RS13710 0.75 +4.2 3,063,299 - LRK54_RS13710 0.75 +0.4 3,063,299 - LRK54_RS13710 0.75 +3.5 3,063,299 - LRK54_RS13710 0.75 +1.6 3,063,299 - LRK54_RS13710 0.75 +2.4 3,063,299 - LRK54_RS13710 0.75 +3.0 3,063,299 - LRK54_RS13710 0.75 +1.6 3,063,299 - LRK54_RS13710 0.75 +2.6 3,063,484 - +3.0 3,063,506 - +1.2 3,063,506 - +0.7 3,063,506 - +4.0 3,063,506 - +2.0 3,063,506 - +2.8 3,063,506 - +2.5 3,063,506 - +0.4 3,063,506 - +2.6 3,063,506 - -1.4 3,063,548 + +3.0 3,063,548 + +0.7 3,063,630 - +1.0
Or see this region's nucleotide sequence