Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13690

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
3,058,498	+		LRK54_RS13680	0.41	-2.1
3,058,498	+		LRK54_RS13680	0.41	-0.9
3,058,498	+		LRK54_RS13680	0.41	+0.7
3,058,498	+		LRK54_RS13680	0.41	-2.5
3,058,499	-		LRK54_RS13680	0.41	-0.6
3,058,499	-		LRK54_RS13680	0.41	-0.5
3,058,499	-		LRK54_RS13680	0.41	-0.7
3,058,499	-		LRK54_RS13680	0.41	-0.9
3,058,499	-		LRK54_RS13680	0.41	+0.7
3,058,499	-		LRK54_RS13680	0.41	+0.0
3,058,499	-		LRK54_RS13680	0.41	-1.2
3,058,499	-		LRK54_RS13680	0.41	+0.8
3,058,499	-		LRK54_RS13680	0.41	-0.1
3,058,499	-		LRK54_RS13680	0.41	+0.3
3,058,499	-		LRK54_RS13680	0.41	-1.5
3,058,499	-		LRK54_RS13680	0.41	+1.0
3,058,499	-		LRK54_RS13680	0.41	-0.4
3,058,499	-		LRK54_RS13680	0.41	-0.4
3,058,499	-		LRK54_RS13680	0.41	+0.7
3,058,721	-				+1.2
3,058,805	+				+0.1
3,058,805	+				-2.3
3,058,805	+				-1.1
3,058,805	+				+0.0
3,058,805	+				-1.5
3,058,805	+				+3.0
3,058,805	+				+3.0
3,058,805	+				-2.0
3,058,805	+				-1.4
3,058,805	+				+0.2
3,059,179	-				-1.1
3,059,203	-				+0.8
3,059,203	-				-0.7
3,059,252	-				+0.2
3,059,350	+				+0.9
3,059,350	+				-1.7
3,059,350	+				-0.9
3,059,653	-				-1.8
3,059,653	-				-1.3
3,059,797	+		LRK54_RS13695	0.10	-0.2
3,059,797	+		LRK54_RS13695	0.10	+0.9
3,059,797	+		LRK54_RS13695	0.10	-1.9
3,059,797	+		LRK54_RS13695	0.10	-1.2
3,059,797	+		LRK54_RS13695	0.10	+0.7
3,059,797	+		LRK54_RS13695	0.10	-0.7
3,059,797	+		LRK54_RS13695	0.10	-2.9
3,059,798	-		LRK54_RS13695	0.11	-1.3
3,059,798	-		LRK54_RS13695	0.11	-0.4
3,059,798	-		LRK54_RS13695	0.11	+0.4
3,060,118	+		LRK54_RS13695	0.68	-1.3
3,060,199	+		LRK54_RS13695	0.82	-1.2
3,060,199	+		LRK54_RS13695	0.82	-0.6
3,060,199	+		LRK54_RS13695	0.82	+1.7
3,060,200	-		LRK54_RS13695	0.82	-2.1
3,060,200	-		LRK54_RS13695	0.82	-2.0
3,060,200	-		LRK54_RS13695	0.82	+0.4
3,060,200	-		LRK54_RS13695	0.82	-0.9
3,060,200	-		LRK54_RS13695	0.82	+1.4
3,060,244	+				-0.6
3,060,244	+				+0.2
3,060,244	+				+1.4
3,060,244	+				-0.9
3,060,244	+				-3.0
3,060,245	-				-0.7
3,060,245	-				+0.4
3,060,245	-				+0.1
3,060,245	-				-0.8
3,060,377	+				-1.7
3,060,377	+				+1.0
3,060,407	+				+1.9
3,060,407	+				+1.0
3,060,407	+				+2.0
3,060,407	+				-0.1
3,060,407	+				+0.6
3,060,408	-				-2.1
3,060,408	-				+1.0
3,060,408	-				+2.0
3,060,408	-				+1.0
3,060,408	-				+0.3
3,060,408	-				-2.5
3,060,408	-				+0.6
3,060,408	-				-0.8
3,060,408	-				-0.1
3,060,408	-				-0.4
3,060,408	-				+0.0
3,060,408	-				-0.9
3,060,408	-				-1.5
3,060,408	-				-0.7
3,060,408	-				-3.9
3,060,408	-				-1.4
3,060,408	-				-0.2
3,060,453	-				+0.7
3,060,453	-				-0.1
3,060,500	+		LRK54_RS13700	0.12	+0.4
3,060,668	+		LRK54_RS13700	0.29	-1.1
3,060,668	+		LRK54_RS13700	0.29	+0.3
3,060,668	+		LRK54_RS13700	0.29	-1.2
3,060,669	-		LRK54_RS13700	0.29	-1.1
3,060,669	-		LRK54_RS13700	0.29	+3.0
3,060,683	+		LRK54_RS13700	0.30	+1.0
3,060,683	+		LRK54_RS13700	0.30	+0.8
3,060,683	+		LRK54_RS13700	0.30	-0.0
3,060,683	+		LRK54_RS13700	0.30	+2.0
3,060,683	+		LRK54_RS13700	0.30	+0.2
3,060,684	-		LRK54_RS13700	0.30	-1.4
3,060,684	-		LRK54_RS13700	0.30	+0.7
3,060,684	-		LRK54_RS13700	0.30	+0.9
3,060,684	-		LRK54_RS13700	0.30	+0.3
3,060,684	-		LRK54_RS13700	0.30	+1.4