Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13320

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,988,747	+		LRK54_RS13310	0.43	+1.8
2,988,747	+		LRK54_RS13310	0.43	+0.3
2,988,747	+		LRK54_RS13310	0.43	-0.8
2,988,747	+		LRK54_RS13310	0.43	-1.7
2,988,747	+		LRK54_RS13310	0.43	+0.5
2,988,747	+		LRK54_RS13310	0.43	-1.4
2,988,747	+		LRK54_RS13310	0.43	+1.2
2,988,747	+		LRK54_RS13310	0.43	+1.7
2,988,747	+		LRK54_RS13310	0.43	-1.7
2,988,747	+		LRK54_RS13310	0.43	-1.7
2,988,747	+		LRK54_RS13310	0.43	-1.0
2,988,747	+		LRK54_RS13310	0.43	+1.3
2,988,748	-		LRK54_RS13310	0.44	+2.1
2,988,748	-		LRK54_RS13310	0.44	-1.2
2,988,748	-		LRK54_RS13310	0.44	-0.2
2,988,748	-		LRK54_RS13310	0.44	-1.4
2,988,748	-		LRK54_RS13310	0.44	-1.1
2,988,748	-		LRK54_RS13310	0.44	-2.5
2,988,748	-		LRK54_RS13310	0.44	-1.6
2,988,748	-		LRK54_RS13310	0.44	-0.7
2,988,748	-		LRK54_RS13310	0.44	+1.1
2,988,748	-		LRK54_RS13310	0.44	-1.8
2,988,748	-		LRK54_RS13310	0.44	-0.5
2,988,748	-		LRK54_RS13310	0.44	-0.5
2,988,820	+		LRK54_RS13310	0.53	+0.6
2,988,820	+		LRK54_RS13310	0.53	+0.9
2,988,820	+		LRK54_RS13310	0.53	-1.3
2,988,820	+		LRK54_RS13310	0.53	+0.3
2,988,820	+		LRK54_RS13310	0.53	-0.1
2,988,820	+		LRK54_RS13310	0.53	+0.2
2,988,820	+		LRK54_RS13310	0.53	-0.4
2,988,820	+		LRK54_RS13310	0.53	-3.8
2,988,820	+		LRK54_RS13310	0.53	-2.1
2,988,820	+		LRK54_RS13310	0.53	+0.3
2,988,821	-		LRK54_RS13310	0.53	-1.5
2,988,821	-		LRK54_RS13310	0.53	+0.5
2,988,821	-		LRK54_RS13310	0.53	-1.3
2,988,821	-		LRK54_RS13310	0.53	+0.8
2,988,821	-		LRK54_RS13310	0.53	+1.7
2,988,821	-		LRK54_RS13310	0.53	-1.2
2,988,821	-		LRK54_RS13310	0.53	-0.4
2,988,821	-		LRK54_RS13310	0.53	-1.1
2,988,821	-		LRK54_RS13310	0.53	-2.2
2,988,821	-		LRK54_RS13310	0.53	-0.9
2,988,821	-		LRK54_RS13310	0.53	-2.1
2,988,821	-		LRK54_RS13310	0.53	-0.1
2,988,821	-		LRK54_RS13310	0.53	-2.1
2,988,831	+		LRK54_RS13310	0.55	+1.3
2,988,832	-		LRK54_RS13310	0.55	-0.8
2,988,832	-		LRK54_RS13310	0.55	+0.5
2,988,832	-		LRK54_RS13310	0.55	-0.6
2,988,832	-		LRK54_RS13310	0.55	-1.0
2,988,832	-		LRK54_RS13310	0.55	-0.1
2,988,832	-		LRK54_RS13310	0.55	-1.0
2,988,933	+		LRK54_RS13310	0.69	-0.0
2,988,933	+		LRK54_RS13310	0.69	+0.8
2,988,933	+		LRK54_RS13310	0.69	+0.8
2,988,933	+		LRK54_RS13310	0.69	-0.3
2,988,933	+		LRK54_RS13310	0.69	-0.6
2,988,933	+		LRK54_RS13310	0.69	+1.5
2,988,933	+		LRK54_RS13310	0.69	+1.1
2,988,933	+		LRK54_RS13310	0.69	+2.3
2,988,933	+		LRK54_RS13310	0.69	-0.2
2,988,933	+		LRK54_RS13310	0.69	+0.6
2,988,933	+		LRK54_RS13310	0.69	+0.5
2,988,933	+		LRK54_RS13310	0.69	-1.0
2,988,933	+		LRK54_RS13310	0.69	+2.1
2,988,933	+		LRK54_RS13310	0.69	+1.1
2,988,933	+		LRK54_RS13310	0.69	-1.8
2,988,933	+		LRK54_RS13310	0.69	-1.0
2,988,933	+		LRK54_RS13310	0.69	-0.5
2,988,933	+		LRK54_RS13310	0.69	-0.6
2,988,933	+		LRK54_RS13310	0.69	+0.8
2,988,933	+		LRK54_RS13310	0.69	-0.6
2,988,933	+		LRK54_RS13310	0.69	-0.2
2,988,933	+		LRK54_RS13310	0.69	-2.6
2,988,933	+		LRK54_RS13310	0.69	-0.8
2,988,933	+		LRK54_RS13310	0.69	-1.0
2,988,933	+		LRK54_RS13310	0.69	+2.5
2,988,933	+		LRK54_RS13310	0.69	+0.0
2,988,933	+		LRK54_RS13310	0.69	-0.5
2,988,933	+		LRK54_RS13310	0.69	+0.2
2,988,933	+		LRK54_RS13310	0.69	+0.8
2,988,933	+		LRK54_RS13310	0.69	-2.7
2,988,934	-		LRK54_RS13310	0.69	+1.1
2,988,934	-		LRK54_RS13310	0.69	+0.3
2,988,934	-		LRK54_RS13310	0.69	+1.2
2,988,934	-		LRK54_RS13310	0.69	-2.6
2,988,934	-		LRK54_RS13310	0.69	-1.7
2,988,934	-		LRK54_RS13310	0.69	-0.7
2,988,934	-		LRK54_RS13310	0.69	-0.4
2,988,934	-		LRK54_RS13310	0.69	+3.1
2,988,934	-		LRK54_RS13310	0.69	-0.9
2,988,934	-		LRK54_RS13310	0.69	-0.6
2,988,934	-		LRK54_RS13310	0.69	-1.8
2,988,934	-		LRK54_RS13310	0.69	-0.2
2,988,934	-		LRK54_RS13310	0.69	+0.2
2,988,934	-		LRK54_RS13310	0.69	-0.8
2,988,934	-		LRK54_RS13310	0.69	-1.1
2,988,934	-		LRK54_RS13310	0.69	-1.8
2,988,934	-		LRK54_RS13310	0.69	+1.9
2,988,934	-		LRK54_RS13310	0.69	-0.6
2,988,934	-		LRK54_RS13310	0.69	+2.1
2,988,934	-		LRK54_RS13310	0.69	+1.1
2,988,934	-		LRK54_RS13310	0.69	+0.5
2,988,934	-		LRK54_RS13310	0.69	+0.5
2,988,934	-		LRK54_RS13310	0.69	+0.4
2,988,934	-		LRK54_RS13310	0.69	-0.9
2,988,934	-		LRK54_RS13310	0.69	-1.7
2,988,934	-		LRK54_RS13310	0.69	+0.2
2,988,934	-		LRK54_RS13310	0.69	-0.2
2,988,934	-		LRK54_RS13310	0.69	+0.6
2,988,934	-		LRK54_RS13310	0.69	-1.7
2,988,936	+		LRK54_RS13310	0.69	+0.4
2,988,936	+		LRK54_RS13310	0.69	-0.9
2,988,937	-		LRK54_RS13310	0.69	-1.0
2,988,957	+		LRK54_RS13310	0.72	-0.6
2,988,957	+		LRK54_RS13310	0.72	+0.1
2,988,957	+		LRK54_RS13310	0.72	-0.4
2,988,957	+				+1.5
2,988,957	+		LRK54_RS13310	0.72	-0.7
2,988,957	+		LRK54_RS13310	0.72	+1.1
2,988,957	+		LRK54_RS13310	0.72	+2.1
2,988,957	+		LRK54_RS13310	0.72	-0.1
2,988,957	+		LRK54_RS13310	0.72	+0.7
2,988,957	+		LRK54_RS13310	0.72	-0.8
2,988,957	+		LRK54_RS13310	0.72	+0.7
2,988,957	+		LRK54_RS13310	0.72	+0.3
2,988,957	+		LRK54_RS13310	0.72	-0.6
2,988,957	+		LRK54_RS13310	0.72	-0.8
2,988,957	+		LRK54_RS13310	0.72	-0.9
2,988,957	+		LRK54_RS13310	0.72	+0.9
2,988,957	+		LRK54_RS13310	0.72	+1.6
2,988,957	+		LRK54_RS13310	0.72	+0.8
2,988,957	+		LRK54_RS13310	0.72	+1.5
2,988,957	+		LRK54_RS13310	0.72	+0.2
2,988,957	+		LRK54_RS13310	0.72	+0.5
2,988,957	+		LRK54_RS13310	0.72	+1.1
2,988,957	+		LRK54_RS13310	0.72	-1.6
2,988,957	+		LRK54_RS13310	0.72	+0.3
2,988,957	+		LRK54_RS13310	0.72	+0.4
2,988,957	+		LRK54_RS13310	0.72	+0.8
2,988,957	+		LRK54_RS13310	0.72	-0.5
2,988,957	+		LRK54_RS13310	0.72	-0.9
2,988,958	-		LRK54_RS13310	0.72	-1.5
2,988,958	-		LRK54_RS13310	0.72	-0.6
2,988,958	-		LRK54_RS13310	0.72	+2.1
2,988,958	-		LRK54_RS13310	0.72	-1.3
2,988,958	-		LRK54_RS13310	0.72	-0.6
2,988,958	-		LRK54_RS13310	0.72	-0.4
2,988,958	-		LRK54_RS13310	0.72	-1.1
2,988,958	-		LRK54_RS13310	0.72	-0.2
2,988,958	-		LRK54_RS13310	0.72	-2.6
2,988,958	-		LRK54_RS13310	0.72	+0.6
2,988,958	-		LRK54_RS13310	0.72	+2.1
2,988,958	-		LRK54_RS13310	0.72	+0.2
2,988,958	-		LRK54_RS13310	0.72	-1.3
2,988,958	-		LRK54_RS13310	0.72	+1.1
2,988,958	-		LRK54_RS13310	0.72	+1.2
2,988,958	-		LRK54_RS13310	0.72	-1.4
2,988,958	-		LRK54_RS13310	0.72	-1.2
2,988,958	-		LRK54_RS13310	0.72	-1.7
2,988,958	-		LRK54_RS13310	0.72	+0.0
2,988,958	-		LRK54_RS13310	0.72	-1.1
2,988,958	-		LRK54_RS13310	0.72	-0.0
2,988,958	-		LRK54_RS13310	0.72	-2.1
2,988,958	-		LRK54_RS13310	0.72	-1.7
2,988,958	-		LRK54_RS13310	0.72	+0.8
2,988,958	-		LRK54_RS13310	0.72	+2.7
2,988,958	-		LRK54_RS13310	0.72	-0.4
2,988,958	-		LRK54_RS13310	0.72	+1.9
2,988,958	-		LRK54_RS13310	0.72	+0.8
2,988,958	-		LRK54_RS13310	0.72	+0.5
2,989,138	+				-1.5
2,989,138	+				+0.1
2,989,138	+				-1.9
2,989,138	+				-0.6
2,989,139	-				-0.7
2,989,139	-				-0.1
2,989,139	-				-2.1
2,989,139	-				-0.4
2,989,169	+				-0.2
2,989,169	+				-0.4
2,989,169	+				-1.6
2,989,169	+				+2.1
2,989,169	+				-0.1
2,989,169	+				-2.0
2,989,169	+				+2.6
2,989,169	+				-0.6
2,989,169	+				-1.3
2,989,170	-				+0.4
2,989,170	-				-1.1
2,989,170	-				-1.5
2,989,170	-				-0.8
2,989,170	-				+0.8
2,989,170	-				-1.0
2,989,170	-				-1.3
2,989,170	-				+1.1
2,989,170	-				-1.8
2,989,170	-				+0.5
2,989,170	-				+0.4
2,989,170	-				-1.5
2,989,170	-				-0.3
2,989,170	-				-0.7
2,989,170	-				+1.5
2,989,220	+				+0.5
2,989,220	+				-3.2
2,989,220	+				-1.5
2,989,220	+				-0.8
2,989,220	+				-0.0
2,989,220	+				-1.2
2,989,220	+				-1.2
2,989,220	+				+0.8
2,989,220	+				+0.2
2,989,220	+				+0.6
2,989,220	+				-0.6
2,989,220	+				-0.1
2,989,220	+				-1.5
2,989,220	+				-0.2
2,989,220	+				-1.0
2,989,220	+				-0.4
2,989,221	-				+0.9
2,989,221	-				+1.1
2,989,221	-				-0.8
2,989,221	-				+0.5
2,989,221	-				-1.2
2,989,221	-				-0.2
2,989,221	-				-1.7
2,989,221	-				+2.1
2,989,221	-				-1.1
2,989,221	-				+0.2
2,989,221	-				-0.3
2,989,221	-				-0.3
2,989,221	-				+0.1
2,989,221	-				-2.3
2,989,221	-				-3.5
2,989,221	-				+0.5
2,989,221	-				+2.7
2,989,243	+				-0.2
2,989,243	+				+0.1
2,989,243	+				+3.1
2,989,243	+				+0.2
2,989,243	+				+0.1
2,989,243	+				+0.1
2,989,243	+				+0.4
2,989,243	+				-1.8
2,989,243	+				-0.1
2,989,243	+				+0.8
2,989,243	+				-1.4
2,989,244	-				-0.6
2,989,244	-				+0.5
2,989,244	-				-0.4
2,989,244	-				-0.6
2,989,244	-				+0.3
2,989,244	-				-1.8
2,989,244	-				+1.1
2,989,244	-				+0.1
2,989,244	-				-0.0
2,989,275	+				+1.5
2,989,275	+				+0.5
2,989,275	+				-1.5
2,989,275	+				+0.9
2,989,275	+				-0.9
2,989,276	-				+1.1
2,989,276	-				-0.2
2,989,276	-				+1.3
2,989,276	-				+0.6
2,989,291	+				+1.3
2,989,291	+				+0.2
2,989,291	+				+0.2
2,989,291	+				+0.6
2,989,291	+				-1.2
2,989,291	+				+0.1
2,989,291	+				-0.7
2,989,291	+				+1.5
2,989,291	+				-2.0
2,989,292	-				-1.2
2,989,292	-				+0.1
2,989,292	-				-0.6
2,989,292	-				+0.8
2,989,292	-				-0.0
2,989,292	-				+0.9
2,989,292	-				+0.0
2,989,292	-				-1.7
2,989,358	+				-0.5
2,989,358	+				+0.9
2,989,358	+				+0.3
2,989,358	+				-0.4
2,989,358	+				-0.3
2,989,358	+				-1.1
2,989,359	-				-0.5
2,989,359	-				-1.9
2,989,484	+				-1.7
2,989,484	+				+0.1
2,989,769	+				-1.0
2,989,831	+		LRK54_RS13320	0.30	-1.4
2,989,831	+				+2.1
2,989,831	+		LRK54_RS13320	0.30	-1.6
2,989,831	+		LRK54_RS13320	0.30	+0.5
2,989,831	+		LRK54_RS13320	0.30	-0.3
2,989,831	+		LRK54_RS13320	0.30	-1.1
2,989,831	+		LRK54_RS13320	0.30	-2.1
2,989,831	+		LRK54_RS13320	0.30	+1.5
2,989,831	+		LRK54_RS13320	0.30	-3.3
2,989,831	+		LRK54_RS13320	0.30	-1.7
2,989,831	+		LRK54_RS13320	0.30	-1.0
2,989,831	+		LRK54_RS13320	0.30	+1.1
2,989,831	+		LRK54_RS13320	0.30	-0.1
2,989,831	+		LRK54_RS13320	0.30	-0.4
2,989,831	+		LRK54_RS13320	0.30	+0.7
2,989,832	-		LRK54_RS13320	0.31	+2.1
2,989,832	-		LRK54_RS13320	0.31	+0.6
2,989,832	-		LRK54_RS13320	0.31	-0.1
2,989,832	-		LRK54_RS13320	0.31	+0.4
2,989,832	-		LRK54_RS13320	0.31	-1.4
2,989,832	-		LRK54_RS13320	0.31	-1.0
2,989,832	-		LRK54_RS13320	0.31	-2.3
2,989,832	-		LRK54_RS13320	0.31	-0.1
2,989,832	-		LRK54_RS13320	0.31	+1.2
2,989,832	-		LRK54_RS13320	0.31	-1.7
2,989,832	-		LRK54_RS13320	0.31	+1.2
2,989,832	-		LRK54_RS13320	0.31	-1.5
2,989,832	-		LRK54_RS13320	0.31	+0.7
2,989,868	-		LRK54_RS13320	0.44	-0.4
2,989,868	-		LRK54_RS13320	0.44	+2.1
2,989,933	+		LRK54_RS13320	0.67	+1.5
2,989,933	+		LRK54_RS13320	0.67	-2.5
2,989,933	+		LRK54_RS13320	0.67	-3.1
2,989,933	+		LRK54_RS13320	0.67	+0.8
2,989,933	+		LRK54_RS13320	0.67	-0.6
2,989,933	+		LRK54_RS13320	0.67	-1.3
2,989,934	-		LRK54_RS13320	0.67	-0.3
2,989,934	-		LRK54_RS13320	0.67	-0.7
2,989,934	-		LRK54_RS13320	0.67	-0.4
2,989,934	-		LRK54_RS13320	0.67	-1.1
2,989,934	-		LRK54_RS13320	0.67	+1.7
2,990,015	+				+0.2
2,990,015	+				-1.0
2,990,015	+				-0.4
2,990,015	+				-0.1
2,990,015	+				-0.4
2,990,015	+				-1.2
2,990,016	-				-0.2
2,990,016	-				+0.5
2,990,016	-				-0.9
2,990,016	-				+1.4
2,990,016	-				-1.3
2,990,016	-				+1.1
2,990,176	+				+0.1
2,990,238	+		LRK54_RS13325	0.15	+1.1
2,990,238	+		LRK54_RS13325	0.15	-2.4
2,990,238	+		LRK54_RS13325	0.15	-0.4
2,990,238	+		LRK54_RS13325	0.15	-1.1
2,990,238	+		LRK54_RS13325	0.15	-0.6
2,990,238	+		LRK54_RS13325	0.15	-2.1
2,990,238	+		LRK54_RS13325	0.15	-1.1
2,990,238	+		LRK54_RS13325	0.15	+0.7
2,990,238	+		LRK54_RS13325	0.15	+0.5
2,990,238	+		LRK54_RS13325	0.15	+1.1
2,990,238	+		LRK54_RS13325	0.15	-0.0
2,990,238	+		LRK54_RS13325	0.15	-0.1
2,990,238	+		LRK54_RS13325	0.15	-0.3
2,990,238	+		LRK54_RS13325	0.15	-0.9
2,990,238	+		LRK54_RS13325	0.15	-0.8
2,990,238	+		LRK54_RS13325	0.15	-0.6
2,990,238	+		LRK54_RS13325	0.15	+1.7
2,990,239	-		LRK54_RS13325	0.15	-0.3
2,990,239	-		LRK54_RS13325	0.15	+0.3
2,990,239	-		LRK54_RS13325	0.15	-1.4
2,990,239	-		LRK54_RS13325	0.15	-1.1
2,990,239	-		LRK54_RS13325	0.15	-1.0
2,990,239	-		LRK54_RS13325	0.15	+0.4
2,990,239	-		LRK54_RS13325	0.15	-2.0
2,990,239	-		LRK54_RS13325	0.15	-0.1
2,990,239	-		LRK54_RS13325	0.15	-0.0
2,990,239	-		LRK54_RS13325	0.15	-1.5
2,990,239	-		LRK54_RS13325	0.15	-2.5
2,990,239	-		LRK54_RS13325	0.15	-0.8
2,990,239	-		LRK54_RS13325	0.15	-1.6
2,990,239	-		LRK54_RS13325	0.15	-0.9
2,990,239	-		LRK54_RS13325	0.15	-0.8
2,990,239	-		LRK54_RS13325	0.15	-1.4
2,990,589	+		LRK54_RS13325	0.48	+2.6
2,990,589	+		LRK54_RS13325	0.48	+1.5
2,990,589	+		LRK54_RS13325	0.48	-1.2
2,990,589	+		LRK54_RS13325	0.48	-0.3
2,990,589	+		LRK54_RS13325	0.48	-0.7
2,990,589	+		LRK54_RS13325	0.48	+0.6
2,990,590	-		LRK54_RS13325	0.48	-1.5
2,990,590	-		LRK54_RS13325	0.48	+0.7
2,990,590	-		LRK54_RS13325	0.48	-2.3
2,990,590	-		LRK54_RS13325	0.48	-2.4
2,990,590	-		LRK54_RS13325	0.48	-0.6
2,990,590	-		LRK54_RS13325	0.48	-3.0
2,990,590	-		LRK54_RS13325	0.48	+1.6
2,990,590	-		LRK54_RS13325	0.48	-0.4
2,990,590	-		LRK54_RS13325	0.48	+1.5
2,990,880	+		LRK54_RS13325	0.76	-1.5
2,990,880	+		LRK54_RS13325	0.76	-1.6
2,990,880	+		LRK54_RS13325	0.76	+0.5
2,990,880	+		LRK54_RS13325	0.76	-0.6
2,990,881	-		LRK54_RS13325	0.76	-1.1
2,990,881	-		LRK54_RS13325	0.76	-0.6
2,990,881	-		LRK54_RS13325	0.76	-1.3
2,990,881	-		LRK54_RS13325	0.76	-1.3
2,990,883	+		LRK54_RS13325	0.76	-1.7
2,990,883	+		LRK54_RS13325	0.76	-1.8
2,990,883	+		LRK54_RS13325	0.76	-0.9
2,990,883	+		LRK54_RS13325	0.76	-1.6
2,990,883	+		LRK54_RS13325	0.76	-2.4
2,990,883	+		LRK54_RS13325	0.76	+0.0
2,990,884	-		LRK54_RS13325	0.76	-0.4
2,990,976	+		LRK54_RS13325	0.85	+0.1
2,990,976	+		LRK54_RS13325	0.85	+1.1
2,990,976	+		LRK54_RS13325	0.85	-1.6
2,990,977	-		LRK54_RS13325	0.85	-2.0
2,990,977	-		LRK54_RS13325	0.85	-0.6