Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13290

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,982,286	+		LRK54_RS13285	0.28	-1.1
2,982,286	+		LRK54_RS13285	0.28	+0.4
2,982,286	+		LRK54_RS13285	0.28	+3.1
2,982,286	+		LRK54_RS13285	0.28	+1.7
2,982,286	+		LRK54_RS13285	0.28	-1.4
2,982,286	+		LRK54_RS13285	0.28	+1.1
2,982,286	+		LRK54_RS13285	0.28	-0.8
2,982,287	-		LRK54_RS13285	0.28	+1.5
2,982,287	-		LRK54_RS13285	0.28	+2.5
2,982,370	+		LRK54_RS13285	0.37	+0.3
2,982,370	+		LRK54_RS13285	0.37	-0.7
2,982,370	+		LRK54_RS13285	0.37	-0.3
2,982,371	-		LRK54_RS13285	0.37	-3.2
2,982,371	-		LRK54_RS13285	0.37	-0.3
2,982,371	-		LRK54_RS13285	0.37	+0.7
2,982,371	-		LRK54_RS13285	0.37	+0.8
2,982,371	-		LRK54_RS13285	0.37	-0.1
2,982,371	-		LRK54_RS13285	0.37	-0.8
2,982,371	-		LRK54_RS13285	0.37	-0.4
2,982,371	-		LRK54_RS13285	0.37	+2.0
2,982,371	-		LRK54_RS13285	0.37	-1.3
2,982,371	-		LRK54_RS13285	0.37	+1.1
2,982,371	-		LRK54_RS13285	0.37	-3.3
2,982,371	-		LRK54_RS13285	0.37	+0.6
2,982,408	+		LRK54_RS13285	0.41	-0.3
2,982,523	+		LRK54_RS13285	0.54	-2.4
2,982,523	+		LRK54_RS13285	0.54	-3.3
2,982,523	+		LRK54_RS13285	0.54	-0.8
2,982,523	+		LRK54_RS13285	0.54	-2.1
2,982,523	+		LRK54_RS13285	0.54	-0.3
2,982,523	+		LRK54_RS13285	0.54	-0.8
2,982,523	+		LRK54_RS13285	0.54	-0.3
2,982,523	+		LRK54_RS13285	0.54	-0.2
2,982,523	+		LRK54_RS13285	0.54	-0.7
2,982,523	+		LRK54_RS13285	0.54	+0.7
2,982,523	+		LRK54_RS13285	0.54	-2.3
2,982,523	+		LRK54_RS13285	0.54	+2.1
2,982,523	+		LRK54_RS13285	0.54	-1.0
2,982,524	-		LRK54_RS13285	0.54	+3.1
2,982,524	-		LRK54_RS13285	0.54	-1.9
2,982,524	-		LRK54_RS13285	0.54	-0.5
2,982,524	-		LRK54_RS13285	0.54	+0.3
2,982,524	-		LRK54_RS13285	0.54	+0.3
2,982,524	-		LRK54_RS13285	0.54	+4.1
2,982,524	-		LRK54_RS13285	0.54	-1.1
2,982,524	-		LRK54_RS13285	0.54	-3.1
2,982,524	-		LRK54_RS13285	0.54	+0.2
2,982,524	-		LRK54_RS13285	0.54	-3.0
2,982,524	-		LRK54_RS13285	0.54	-0.3
2,982,524	-		LRK54_RS13285	0.54	-0.3
2,982,524	-		LRK54_RS13285	0.54	-0.6
2,982,524	-		LRK54_RS13285	0.54	-0.9
2,982,627	+		LRK54_RS13285	0.65	-0.1
2,982,627	+		LRK54_RS13285	0.65	+1.7
2,982,868	+				-1.5
2,982,936	+				-1.5
2,982,936	+				-0.5
2,982,936	+				-1.3
2,982,937	-				-1.4
2,982,937	-				+0.7
2,982,937	-				+0.3
2,982,937	-				+0.7
2,982,937	-				-0.5
2,982,937	-				+0.1
2,982,937	-				-0.5
2,982,956	+				-1.6
2,982,957	-				-1.3
2,982,957	-				-1.3
2,982,961	+				-0.8
2,982,961	+				-0.1
2,983,021	+				-0.7
2,983,021	+				-1.8
2,983,022	-				+0.7
2,983,022	-				-2.2
2,983,159	+				-1.1
2,983,159	+				-0.5
2,983,159	+				-0.8
2,983,159	+				-3.4
2,983,160	-				-3.0
2,983,204	+				-0.7
2,983,231	+				+0.8
2,983,231	+				+2.5
2,983,231	+				-1.0
2,983,231	+				+0.3
2,983,231	+				-0.3
2,983,231	+				+0.8
2,983,231	+				-0.9
2,983,231	+				-1.8
2,983,231	+				-0.1
2,983,231	+				+0.5
2,983,231	+				-0.3
2,983,231	+				-1.6
2,983,232	-				-0.1
2,983,232	-				-0.5
2,983,232	-				+3.1
2,983,232	-				-1.6
2,983,232	-				-0.3
2,983,232	-				-1.5
2,983,232	-				-0.5
2,983,232	-				+0.9
2,983,232	-				-1.6
2,983,232	-				-2.8
2,983,233	+				-1.0
2,983,233	+				+0.3
2,983,233	+				-0.5
2,983,233	+				+1.0
2,983,233	+				+0.1
2,983,233	+				-1.1
2,983,234	-				-1.7
2,983,234	-				-1.3
2,983,326	+		LRK54_RS13290	0.12	-0.1
2,983,326	+		LRK54_RS13290	0.12	+2.1
2,983,349	+		LRK54_RS13290	0.15	+1.3
2,983,349	+		LRK54_RS13290	0.15	-0.2
2,983,349	+		LRK54_RS13290	0.15	-2.6
2,983,349	+		LRK54_RS13290	0.15	-0.3
2,983,349	+		LRK54_RS13290	0.15	-1.2
2,983,349	+		LRK54_RS13290	0.15	-0.3
2,983,349	+		LRK54_RS13290	0.15	+0.8
2,983,349	+		LRK54_RS13290	0.15	+1.5
2,983,350	-		LRK54_RS13290	0.15	-2.0
2,983,350	-		LRK54_RS13290	0.15	+1.1
2,983,350	-		LRK54_RS13290	0.15	+3.1
2,983,350	-		LRK54_RS13290	0.15	+0.1
2,983,350	-		LRK54_RS13290	0.15	+0.1
2,983,350	-		LRK54_RS13290	0.15	-0.1
2,983,350	-		LRK54_RS13290	0.15	-0.4
2,983,350	-		LRK54_RS13290	0.15	+0.1
2,983,370	-		LRK54_RS13290	0.17	+1.5
2,983,394	+		LRK54_RS13290	0.20	+0.7
2,983,394	+		LRK54_RS13290	0.20	+0.5
2,983,394	+		LRK54_RS13290	0.20	-0.3
2,983,394	+		LRK54_RS13290	0.20	-1.9
2,983,394	+		LRK54_RS13290	0.20	+2.8
2,983,395	-		LRK54_RS13290	0.20	-1.4
2,983,395	-		LRK54_RS13290	0.20	-0.9
2,983,395	-		LRK54_RS13290	0.20	-0.7
2,983,395	-		LRK54_RS13290	0.20	+0.7
2,983,395	-		LRK54_RS13290	0.20	+4.1
2,983,395	-		LRK54_RS13290	0.20	-2.7
2,983,395	-		LRK54_RS13290	0.20	+2.4
2,983,415	+		LRK54_RS13290	0.23	-1.4
2,983,415	+		LRK54_RS13290	0.23	+1.7
2,983,415	+		LRK54_RS13290	0.23	+0.1
2,983,415	+		LRK54_RS13290	0.23	-1.0
2,983,416	-		LRK54_RS13290	0.23	-0.4
2,983,416	-		LRK54_RS13290	0.23	-1.8
2,983,416	-		LRK54_RS13290	0.23	+1.7
2,983,416	-		LRK54_RS13290	0.23	+0.7
2,983,416	-		LRK54_RS13290	0.23	-0.1
2,983,416	-		LRK54_RS13290	0.23	-1.0
2,983,416	-		LRK54_RS13290	0.23	+3.1
2,983,416	-		LRK54_RS13290	0.23	-3.0
2,983,430	+		LRK54_RS13290	0.25	+1.0
2,983,430	+		LRK54_RS13290	0.25	-0.1
2,983,430	+		LRK54_RS13290	0.25	+1.0
2,983,430	+		LRK54_RS13290	0.25	-1.6
2,983,430	+		LRK54_RS13290	0.25	-0.2
2,983,431	-		LRK54_RS13290	0.25	+2.1
2,983,431	-		LRK54_RS13290	0.25	-1.7
2,983,431	-		LRK54_RS13290	0.25	-1.4
2,983,431	-		LRK54_RS13290	0.25	+1.0
2,983,588	+		LRK54_RS13290	0.44	-1.6
2,983,588	+		LRK54_RS13290	0.44	+0.2
2,983,588	+		LRK54_RS13290	0.44	+2.1
2,983,588	+		LRK54_RS13290	0.44	-0.8
2,983,588	+		LRK54_RS13290	0.44	+0.9
2,983,588	+		LRK54_RS13290	0.44	+0.5
2,983,589	-		LRK54_RS13290	0.44	+0.5
2,983,589	-		LRK54_RS13290	0.44	-1.1
2,983,659	-		LRK54_RS13290	0.53	-0.1
2,983,659	-		LRK54_RS13290	0.53	+1.1
2,983,659	-		LRK54_RS13290	0.53	+0.6
2,983,659	-		LRK54_RS13290	0.53	+0.2
2,983,659	-		LRK54_RS13290	0.53	-1.0
2,983,680	-		LRK54_RS13290	0.56	+0.3
2,983,695	-		LRK54_RS13290	0.57	-1.3
2,983,695	-		LRK54_RS13290	0.57	+0.7
2,983,695	-		LRK54_RS13290	0.57	+2.1
2,983,711	+		LRK54_RS13290	0.59	-1.1
2,983,711	+		LRK54_RS13290	0.59	-1.7
2,983,712	-		LRK54_RS13290	0.60	+0.6
2,983,712	-		LRK54_RS13290	0.60	-0.5
2,983,712	-		LRK54_RS13290	0.60	+0.1
2,983,764	+		LRK54_RS13290	0.66	-0.8
2,983,764	+		LRK54_RS13290	0.66	-1.9
2,983,765	-		LRK54_RS13290	0.66	-0.3
2,983,765	-		LRK54_RS13290	0.66	-0.9
2,983,765	-		LRK54_RS13290	0.66	+0.9
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,771	+		LRK54_RS13290	0.67	-0.7
2,983,771	+		LRK54_RS13290	0.67	-0.7
2,983,771	+		LRK54_RS13290	0.67	-2.0
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,771	+		LRK54_RS13290	0.67	+1.0
2,983,771	+		LRK54_RS13290	0.67	-2.1
2,983,771	+		LRK54_RS13290	0.67	+0.1
2,983,771	+		LRK54_RS13290	0.67	-1.1
2,983,771	+		LRK54_RS13290	0.67	+0.1
2,983,771	+		LRK54_RS13290	0.67	-0.9
2,983,771	+		LRK54_RS13290	0.67	-0.8
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,771	+		LRK54_RS13290	0.67	-0.6
2,983,771	+		LRK54_RS13290	0.67	-1.8
2,983,771	+		LRK54_RS13290	0.67	+0.7
2,983,771	+		LRK54_RS13290	0.67	-0.6
2,983,771	+		LRK54_RS13290	0.67	-0.8
2,983,771	+		LRK54_RS13290	0.67	-1.7
2,983,771	+		LRK54_RS13290	0.67	-0.7
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,772	-		LRK54_RS13290	0.67	+1.5
2,983,772	-		LRK54_RS13290	0.67	-0.6
2,983,772	-		LRK54_RS13290	0.67	+3.1
2,983,772	-		LRK54_RS13290	0.67	-2.6
2,983,772	-		LRK54_RS13290	0.67	-1.8
2,983,772	-		LRK54_RS13290	0.67	+0.8
2,983,772	-		LRK54_RS13290	0.67	-2.4
2,983,772	-		LRK54_RS13290	0.67	+1.3
2,983,772	-		LRK54_RS13290	0.67	-2.5
2,983,772	-		LRK54_RS13290	0.67	-1.2
2,983,772	-		LRK54_RS13290	0.67	-0.5
2,983,772	-		LRK54_RS13290	0.67	-1.2
2,983,772	-		LRK54_RS13290	0.67	+0.7
2,983,929	-		LRK54_RS13290	0.86	-0.2
2,983,929	-		LRK54_RS13290	0.86	-0.2
2,984,142	+				-0.3
2,984,143	-				+0.3
2,984,144	+				-0.3
2,984,144	+				-1.5
2,984,144	+				+0.9
2,984,144	+				-1.9
2,984,145	-				+0.1
2,984,145	-				+1.0
2,984,145	-				-3.4
2,984,145	-				+1.8
2,984,145	-				+0.2
2,984,145	-				-1.9
2,984,145	-				-0.9
2,984,167	+				-2.1
2,984,172	-				-0.8
2,984,197	+				-0.5
2,984,197	+				-3.0
2,984,197	+				-0.3
2,984,197	+				+0.7
2,984,197	+				+1.1
2,984,197	+				-1.2
2,984,197	+				-0.5
2,984,198	-				-2.9
2,984,198	-				+1.1
2,984,198	-				+2.1
2,984,198	-				+1.1
2,984,198	-				-0.7
2,984,198	-				+2.4
2,984,198	-				+0.7
2,984,198	-				+2.1
2,984,246	+				+0.1
2,984,246	+				-0.7
2,984,246	+				-2.6
2,984,246	+				-0.9
2,984,246	+				-1.2
2,984,246	+				-0.5
2,984,246	+				-1.1
2,984,246	+				-0.3
2,984,246	+				+1.3
2,984,246	+				-0.0
2,984,246	+				+3.1
2,984,246	+				+1.5
2,984,246	+				+1.5
2,984,246	+				+1.1
2,984,246	+				+0.9
2,984,246	+				+4.1
2,984,246	+				+0.9
2,984,246	+				+0.1
2,984,246	+				-0.6
2,984,246	+				+0.7
2,984,246	+				-2.3
2,984,246	+				-0.3
2,984,246	+				-0.1
2,984,246	+				-1.3
2,984,246	+				+0.7
2,984,246	+				-0.3
2,984,246	+				-0.4
2,984,246	+				-1.7
2,984,246	+				-0.8
2,984,246	+				-2.4
2,984,247	-				-3.0
2,984,247	-				-2.0
2,984,247	-				-0.7
2,984,247	-				-0.1
2,984,247	-				+1.1
2,984,247	-				-2.0
2,984,247	-				-1.3
2,984,247	-				+2.2
2,984,247	-				-0.7
2,984,247	-				+0.1
2,984,247	-				+1.3
2,984,247	-				+0.9
2,984,247	-				-0.8
2,984,247	-				-1.4
2,984,247	-				+2.1
2,984,247	-				+0.1
2,984,247	-				-0.8
2,984,247	-				+0.7
2,984,247	-				-0.4
2,984,247	-				-1.1
2,984,247	-				+0.3
2,984,247	-				+1.1
2,984,247	-				+0.9
2,984,247	-				-1.1
2,984,323	+				-0.7
2,984,336	-				-1.3
2,984,339	+				-1.0
2,984,339	+				-1.0
2,984,340	-				-0.6
2,984,340	-				+0.3
2,984,420	+				-0.6
2,984,421	-				-0.5
2,984,437	+				-0.0
2,984,445	-				+1.2
2,984,445	-				-0.5
2,984,476	+				-0.3
2,984,476	+				-1.4
2,984,476	+				-0.3
2,984,476	+				-0.7
2,984,477	-				-0.3
2,984,477	-				-0.7
2,984,596	+				-1.3
2,984,653	+				-1.0
2,984,653	+				-1.7
2,984,653	+				+0.1
2,984,653	+				-0.3
2,984,653	+				+1.5
2,984,653	+				+0.5
2,984,653	+				+1.4
2,984,653	+				-0.1
2,984,653	+				+1.1
2,984,654	-				-1.9
2,984,654	-				+0.5
2,984,654	-				-0.5
2,984,654	-				-1.4
2,984,709	+				-0.0
2,984,709	+				-1.7
2,984,709	+				-0.2
2,984,709	+				-0.9
2,984,709	+				-1.2
2,984,710	-				-0.3
2,984,710	-				-4.0
2,984,710	-				-0.9
2,984,710	-				-0.3
2,984,710	-				-0.5
2,984,710	-				-0.1
2,984,837	-		LRK54_RS13295	0.16	+0.1
2,984,870	+		LRK54_RS13295	0.19	-1.8
2,984,870	+		LRK54_RS13295	0.19	+1.1
2,984,870	+		LRK54_RS13295	0.19	-0.6
2,984,870	+		LRK54_RS13295	0.19	-0.5
2,984,870	+		LRK54_RS13295	0.19	+0.1
2,984,870	+		LRK54_RS13295	0.19	-1.7
2,984,870	+		LRK54_RS13295	0.19	+0.7
2,984,871	-		LRK54_RS13295	0.19	+1.4
2,984,871	-		LRK54_RS13295	0.19	-0.5
2,984,871	-		LRK54_RS13295	0.19	-1.4
2,984,871	-		LRK54_RS13295	0.19	+0.5
2,984,871	-		LRK54_RS13295	0.19	-0.7
2,984,871	-		LRK54_RS13295	0.19	-3.2
2,984,871	-		LRK54_RS13295	0.19	-1.4
2,984,941	+		LRK54_RS13295	0.26	-1.2
2,984,941	+		LRK54_RS13295	0.26	-0.9
2,984,941	+		LRK54_RS13295	0.26	-0.2
2,984,941	+		LRK54_RS13295	0.26	-0.4
2,984,941	+		LRK54_RS13295	0.26	+0.4
2,984,941	+		LRK54_RS13295	0.26	+0.5
2,984,941	+		LRK54_RS13295	0.26	-0.8
2,984,941	+		LRK54_RS13295	0.26	-1.8
2,984,941	+		LRK54_RS13295	0.26	-0.8
2,984,941	+		LRK54_RS13295	0.26	-0.6
2,984,941	+		LRK54_RS13295	0.26	+0.5
2,984,941	+		LRK54_RS13295	0.26	-3.0
2,984,941	+		LRK54_RS13295	0.26	-3.0
2,984,941	+		LRK54_RS13295	0.26	-0.3
2,984,941	+		LRK54_RS13295	0.26	-2.5
2,984,941	+		LRK54_RS13295	0.26	-0.1
2,984,941	+		LRK54_RS13295	0.26	+0.7
2,984,942	-		LRK54_RS13295	0.26	-0.8
2,984,942	-		LRK54_RS13295	0.26	-0.1
2,984,942	-		LRK54_RS13295	0.26	+1.0
2,984,942	-		LRK54_RS13295	0.26	-1.2
2,984,942	-		LRK54_RS13295	0.26	-2.6
2,984,942	-		LRK54_RS13295	0.26	-0.9
2,984,942	-		LRK54_RS13295	0.26	-0.6
2,984,942	-		LRK54_RS13295	0.26	+1.0
2,984,942	-		LRK54_RS13295	0.26	+0.7
2,984,942	-		LRK54_RS13295	0.26	-0.6
2,984,942	-		LRK54_RS13295	0.26	-0.4
2,984,942	-		LRK54_RS13295	0.26	+0.3
2,984,942	-		LRK54_RS13295	0.26	-0.9
2,984,942	-		LRK54_RS13295	0.26	-0.6
2,984,942	-		LRK54_RS13295	0.26	-0.9
2,984,942	-		LRK54_RS13295	0.26	-0.5
2,985,025	+		LRK54_RS13295	0.34	+1.5
2,985,025	+		LRK54_RS13295	0.34	+0.4
2,985,025	+		LRK54_RS13295	0.34	-1.2
2,985,025	+		LRK54_RS13295	0.34	-2.2
2,985,026	-		LRK54_RS13295	0.34	-3.7
2,985,026	-		LRK54_RS13295	0.34	-0.5
2,985,026	-		LRK54_RS13295	0.34	-1.0
2,985,026	-		LRK54_RS13295	0.34	+0.6
2,985,026	-		LRK54_RS13295	0.34	-1.9