Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13285

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,981,193	+		LRK54_RS13280	0.44	+1.3
2,981,193	+		LRK54_RS13280	0.44	+2.1
2,981,193	+		LRK54_RS13280	0.44	-0.9
2,981,193	+		LRK54_RS13280	0.44	+0.1
2,981,193	+		LRK54_RS13280	0.44	+0.2
2,981,193	+		LRK54_RS13280	0.44	-1.0
2,981,194	-		LRK54_RS13280	0.44	+0.8
2,981,194	-		LRK54_RS13280	0.44	-0.9
2,981,194	-		LRK54_RS13280	0.44	-0.4
2,981,194	-		LRK54_RS13280	0.44	+0.8
2,981,194	-		LRK54_RS13280	0.44	-0.3
2,981,194	-		LRK54_RS13280	0.44	-0.1
2,981,262	+		LRK54_RS13280	0.50	+1.1
2,981,263	-		LRK54_RS13280	0.50	-0.0
2,981,263	-		LRK54_RS13280	0.50	-0.7
2,981,263	-		LRK54_RS13280	0.50	-2.1
2,981,263	-		LRK54_RS13280	0.50	+2.1
2,981,263	-		LRK54_RS13280	0.50	+0.1
2,981,263	-		LRK54_RS13280	0.50	-0.2
2,981,554	-		LRK54_RS13280	0.73	-0.8
2,981,554	-		LRK54_RS13280	0.73	-0.7
2,981,670	+		LRK54_RS13280	0.82	+0.6
2,981,670	+		LRK54_RS13280	0.82	+1.1
2,981,670	+		LRK54_RS13280	0.82	-0.1
2,981,671	-		LRK54_RS13280	0.82	+1.1
2,981,671	-		LRK54_RS13280	0.82	+0.5
2,981,687	+		LRK54_RS13280	0.83	-1.7
2,981,687	+		LRK54_RS13280	0.83	+1.2
2,981,687	+		LRK54_RS13280	0.83	-0.7
2,981,687	+		LRK54_RS13280	0.83	-0.8
2,981,687	+		LRK54_RS13280	0.83	+1.1
2,981,687	+		LRK54_RS13280	0.83	-1.9
2,981,687	+		LRK54_RS13280	0.83	-1.6
2,981,687	+		LRK54_RS13280	0.83	-0.4
2,981,688	-		LRK54_RS13280	0.83	+2.1
2,981,688	-		LRK54_RS13280	0.83	+0.5
2,981,688	-		LRK54_RS13280	0.83	-1.1
2,981,688	-		LRK54_RS13280	0.83	+0.5
2,981,688	-		LRK54_RS13280	0.83	+2.1
2,981,688	-		LRK54_RS13280	0.83	+1.3
2,981,688	-		LRK54_RS13280	0.83	+0.1
2,981,688	-		LRK54_RS13280	0.83	-2.2
2,981,688	-		LRK54_RS13280	0.83	-1.4
2,981,834	+				-0.3
2,981,834	+				+0.7
2,981,834	+				+3.1
2,981,834	+				+0.9
2,981,834	+				+1.1
2,981,834	+				+0.4
2,981,834	+				+0.3
2,981,834	+				-1.2
2,981,835	-				-1.0
2,981,835	-				-0.9
2,981,835	-				-1.4
2,981,835	-				-0.6
2,981,835	-				-1.0
2,981,835	-				+3.1
2,981,835	-				-0.8
2,981,835	-				-0.7
2,981,835	-				-0.6
2,981,835	-				-0.5
2,981,835	-				-0.3
2,981,835	-				+0.1
2,981,835	-				-0.8
2,981,874	+				+0.3
2,981,875	-				+1.7
2,981,894	+				-0.0
2,981,895	-				+0.7
2,981,932	+				-1.7
2,981,932	+				+0.7
2,981,933	-				+0.7
2,981,933	-				-0.3
2,981,977	+				-1.8
2,982,025	+				-0.7
2,982,159	+		LRK54_RS13285	0.15	+1.0
2,982,159	+		LRK54_RS13285	0.15	-1.2
2,982,159	+		LRK54_RS13285	0.15	+0.0
2,982,159	+		LRK54_RS13285	0.15	-0.6
2,982,159	+		LRK54_RS13285	0.15	+0.5
2,982,159	+		LRK54_RS13285	0.15	-1.8
2,982,160	-		LRK54_RS13285	0.15	-1.1
2,982,160	-		LRK54_RS13285	0.15	-2.8
2,982,160	-		LRK54_RS13285	0.15	-0.4
2,982,160	-		LRK54_RS13285	0.15	-3.1
2,982,160	-		LRK54_RS13285	0.15	+0.3
2,982,160	-		LRK54_RS13285	0.15	+0.7
2,982,286	+		LRK54_RS13285	0.28	-1.1
2,982,286	+		LRK54_RS13285	0.28	+0.4
2,982,286	+		LRK54_RS13285	0.28	+3.1
2,982,286	+		LRK54_RS13285	0.28	+1.7
2,982,286	+		LRK54_RS13285	0.28	-1.4
2,982,286	+		LRK54_RS13285	0.28	+1.1
2,982,286	+		LRK54_RS13285	0.28	-0.8
2,982,287	-		LRK54_RS13285	0.28	+1.5
2,982,287	-		LRK54_RS13285	0.28	+2.5
2,982,370	+		LRK54_RS13285	0.37	+0.3
2,982,370	+		LRK54_RS13285	0.37	-0.7
2,982,370	+		LRK54_RS13285	0.37	-0.3
2,982,371	-		LRK54_RS13285	0.37	-3.2
2,982,371	-		LRK54_RS13285	0.37	-0.3
2,982,371	-		LRK54_RS13285	0.37	+0.7
2,982,371	-		LRK54_RS13285	0.37	+0.8
2,982,371	-		LRK54_RS13285	0.37	-0.1
2,982,371	-		LRK54_RS13285	0.37	-0.8
2,982,371	-		LRK54_RS13285	0.37	-0.4
2,982,371	-		LRK54_RS13285	0.37	+2.0
2,982,371	-		LRK54_RS13285	0.37	-1.3
2,982,371	-		LRK54_RS13285	0.37	+1.1
2,982,371	-		LRK54_RS13285	0.37	-3.3
2,982,371	-		LRK54_RS13285	0.37	+0.6
2,982,408	+		LRK54_RS13285	0.41	-0.3
2,982,523	+		LRK54_RS13285	0.54	-2.4
2,982,523	+		LRK54_RS13285	0.54	-3.3
2,982,523	+		LRK54_RS13285	0.54	-0.8
2,982,523	+		LRK54_RS13285	0.54	-2.1
2,982,523	+		LRK54_RS13285	0.54	-0.3
2,982,523	+		LRK54_RS13285	0.54	-0.8
2,982,523	+		LRK54_RS13285	0.54	-0.3
2,982,523	+		LRK54_RS13285	0.54	-0.2
2,982,523	+		LRK54_RS13285	0.54	-0.7
2,982,523	+		LRK54_RS13285	0.54	+0.7
2,982,523	+		LRK54_RS13285	0.54	-2.3
2,982,523	+		LRK54_RS13285	0.54	+2.1
2,982,523	+		LRK54_RS13285	0.54	-1.0
2,982,524	-		LRK54_RS13285	0.54	+3.1
2,982,524	-		LRK54_RS13285	0.54	-1.9
2,982,524	-		LRK54_RS13285	0.54	-0.5
2,982,524	-		LRK54_RS13285	0.54	+0.3
2,982,524	-		LRK54_RS13285	0.54	+0.3
2,982,524	-		LRK54_RS13285	0.54	+4.1
2,982,524	-		LRK54_RS13285	0.54	-1.1
2,982,524	-		LRK54_RS13285	0.54	-3.1
2,982,524	-		LRK54_RS13285	0.54	+0.2
2,982,524	-		LRK54_RS13285	0.54	-3.0
2,982,524	-		LRK54_RS13285	0.54	-0.3
2,982,524	-		LRK54_RS13285	0.54	-0.3
2,982,524	-		LRK54_RS13285	0.54	-0.6
2,982,524	-		LRK54_RS13285	0.54	-0.9
2,982,627	+		LRK54_RS13285	0.65	-0.1
2,982,627	+		LRK54_RS13285	0.65	+1.7
2,982,868	+				-1.5
2,982,936	+				-1.5
2,982,936	+				-0.5
2,982,936	+				-1.3
2,982,937	-				-1.4
2,982,937	-				+0.7
2,982,937	-				+0.3
2,982,937	-				+0.7
2,982,937	-				-0.5
2,982,937	-				+0.1
2,982,937	-				-0.5
2,982,956	+				-1.6
2,982,957	-				-1.3
2,982,957	-				-1.3
2,982,961	+				-0.8
2,982,961	+				-0.1
2,983,021	+				-0.7
2,983,021	+				-1.8
2,983,022	-				+0.7
2,983,022	-				-2.2
2,983,159	+				-1.1
2,983,159	+				-0.5
2,983,159	+				-0.8
2,983,159	+				-3.4
2,983,160	-				-3.0
2,983,204	+				-0.7
2,983,231	+				+0.8
2,983,231	+				+2.5
2,983,231	+				-1.0
2,983,231	+				+0.3
2,983,231	+				-0.3
2,983,231	+				+0.8
2,983,231	+				-0.9
2,983,231	+				-1.8
2,983,231	+				-0.1
2,983,231	+				+0.5
2,983,231	+				-0.3
2,983,231	+				-1.6
2,983,232	-				-0.1
2,983,232	-				-0.5
2,983,232	-				+3.1
2,983,232	-				-1.6
2,983,232	-				-0.3
2,983,232	-				-1.5
2,983,232	-				-0.5
2,983,232	-				+0.9
2,983,232	-				-1.6
2,983,232	-				-2.8
2,983,233	+				-1.0
2,983,233	+				+0.3
2,983,233	+				-0.5
2,983,233	+				+1.0
2,983,233	+				+0.1
2,983,233	+				-1.1
2,983,234	-				-1.7
2,983,234	-				-1.3
2,983,326	+		LRK54_RS13290	0.12	-0.1
2,983,326	+		LRK54_RS13290	0.12	+2.1
2,983,349	+		LRK54_RS13290	0.15	+1.3
2,983,349	+		LRK54_RS13290	0.15	-0.2
2,983,349	+		LRK54_RS13290	0.15	-2.6
2,983,349	+		LRK54_RS13290	0.15	-0.3
2,983,349	+		LRK54_RS13290	0.15	-1.2
2,983,349	+		LRK54_RS13290	0.15	-0.3
2,983,349	+		LRK54_RS13290	0.15	+0.8
2,983,349	+		LRK54_RS13290	0.15	+1.5
2,983,350	-		LRK54_RS13290	0.15	-2.0
2,983,350	-		LRK54_RS13290	0.15	+1.1
2,983,350	-		LRK54_RS13290	0.15	+3.1
2,983,350	-		LRK54_RS13290	0.15	+0.1
2,983,350	-		LRK54_RS13290	0.15	+0.1
2,983,350	-		LRK54_RS13290	0.15	-0.1
2,983,350	-		LRK54_RS13290	0.15	-0.4
2,983,350	-		LRK54_RS13290	0.15	+0.1
2,983,370	-		LRK54_RS13290	0.17	+1.5
2,983,394	+		LRK54_RS13290	0.20	+0.7
2,983,394	+		LRK54_RS13290	0.20	+0.5
2,983,394	+		LRK54_RS13290	0.20	-0.3
2,983,394	+		LRK54_RS13290	0.20	-1.9
2,983,394	+		LRK54_RS13290	0.20	+2.8
2,983,395	-		LRK54_RS13290	0.20	-1.4
2,983,395	-		LRK54_RS13290	0.20	-0.9
2,983,395	-		LRK54_RS13290	0.20	-0.7
2,983,395	-		LRK54_RS13290	0.20	+0.7
2,983,395	-		LRK54_RS13290	0.20	+4.1
2,983,395	-		LRK54_RS13290	0.20	-2.7
2,983,395	-		LRK54_RS13290	0.20	+2.4
2,983,415	+		LRK54_RS13290	0.23	-1.4
2,983,415	+		LRK54_RS13290	0.23	+1.7
2,983,415	+		LRK54_RS13290	0.23	+0.1
2,983,415	+		LRK54_RS13290	0.23	-1.0
2,983,416	-		LRK54_RS13290	0.23	-0.4
2,983,416	-		LRK54_RS13290	0.23	-1.8
2,983,416	-		LRK54_RS13290	0.23	+1.7
2,983,416	-		LRK54_RS13290	0.23	+0.7
2,983,416	-		LRK54_RS13290	0.23	-0.1
2,983,416	-		LRK54_RS13290	0.23	-1.0
2,983,416	-		LRK54_RS13290	0.23	+3.1
2,983,416	-		LRK54_RS13290	0.23	-3.0
2,983,430	+		LRK54_RS13290	0.25	+1.0
2,983,430	+		LRK54_RS13290	0.25	-0.1
2,983,430	+		LRK54_RS13290	0.25	+1.0
2,983,430	+		LRK54_RS13290	0.25	-1.6
2,983,430	+		LRK54_RS13290	0.25	-0.2
2,983,431	-		LRK54_RS13290	0.25	+2.1
2,983,431	-		LRK54_RS13290	0.25	-1.7
2,983,431	-		LRK54_RS13290	0.25	-1.4
2,983,431	-		LRK54_RS13290	0.25	+1.0
2,983,588	+		LRK54_RS13290	0.44	-1.6
2,983,588	+		LRK54_RS13290	0.44	+0.2
2,983,588	+		LRK54_RS13290	0.44	+2.1
2,983,588	+		LRK54_RS13290	0.44	-0.8
2,983,588	+		LRK54_RS13290	0.44	+0.9
2,983,588	+		LRK54_RS13290	0.44	+0.5
2,983,589	-		LRK54_RS13290	0.44	+0.5
2,983,589	-		LRK54_RS13290	0.44	-1.1
2,983,659	-		LRK54_RS13290	0.53	-0.1
2,983,659	-		LRK54_RS13290	0.53	+1.1
2,983,659	-		LRK54_RS13290	0.53	+0.6
2,983,659	-		LRK54_RS13290	0.53	+0.2
2,983,659	-		LRK54_RS13290	0.53	-1.0
2,983,680	-		LRK54_RS13290	0.56	+0.3
2,983,695	-		LRK54_RS13290	0.57	-1.3
2,983,695	-		LRK54_RS13290	0.57	+0.7
2,983,695	-		LRK54_RS13290	0.57	+2.1
2,983,711	+		LRK54_RS13290	0.59	-1.1
2,983,711	+		LRK54_RS13290	0.59	-1.7
2,983,712	-		LRK54_RS13290	0.60	+0.6
2,983,712	-		LRK54_RS13290	0.60	-0.5
2,983,712	-		LRK54_RS13290	0.60	+0.1
2,983,764	+		LRK54_RS13290	0.66	-0.8
2,983,764	+		LRK54_RS13290	0.66	-1.9
2,983,765	-		LRK54_RS13290	0.66	-0.3
2,983,765	-		LRK54_RS13290	0.66	-0.9
2,983,765	-		LRK54_RS13290	0.66	+0.9
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,771	+		LRK54_RS13290	0.67	-0.7
2,983,771	+		LRK54_RS13290	0.67	-0.7
2,983,771	+		LRK54_RS13290	0.67	-2.0
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,771	+		LRK54_RS13290	0.67	+1.0
2,983,771	+		LRK54_RS13290	0.67	-2.1
2,983,771	+		LRK54_RS13290	0.67	+0.1
2,983,771	+		LRK54_RS13290	0.67	-1.1
2,983,771	+		LRK54_RS13290	0.67	+0.1
2,983,771	+		LRK54_RS13290	0.67	-0.9
2,983,771	+		LRK54_RS13290	0.67	-0.8
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,771	+		LRK54_RS13290	0.67	-0.6
2,983,771	+		LRK54_RS13290	0.67	-1.8
2,983,771	+		LRK54_RS13290	0.67	+0.7
2,983,771	+		LRK54_RS13290	0.67	-0.6
2,983,771	+		LRK54_RS13290	0.67	-0.8
2,983,771	+		LRK54_RS13290	0.67	-1.7
2,983,771	+		LRK54_RS13290	0.67	-0.7
2,983,771	+		LRK54_RS13290	0.67	-0.4
2,983,772	-		LRK54_RS13290	0.67	+1.5
2,983,772	-		LRK54_RS13290	0.67	-0.6
2,983,772	-		LRK54_RS13290	0.67	+3.1
2,983,772	-		LRK54_RS13290	0.67	-2.6
2,983,772	-		LRK54_RS13290	0.67	-1.8
2,983,772	-		LRK54_RS13290	0.67	+0.8
2,983,772	-		LRK54_RS13290	0.67	-2.4
2,983,772	-		LRK54_RS13290	0.67	+1.3
2,983,772	-		LRK54_RS13290	0.67	-2.5
2,983,772	-		LRK54_RS13290	0.67	-1.2
2,983,772	-		LRK54_RS13290	0.67	-0.5
2,983,772	-		LRK54_RS13290	0.67	-1.2
2,983,772	-		LRK54_RS13290	0.67	+0.7
2,983,929	-		LRK54_RS13290	0.86	-0.2
2,983,929	-		LRK54_RS13290	0.86	-0.2