Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02705 and LRK54_RS02710 are separated by 93 nucleotides LRK54_RS02710 and LRK54_RS02715 are separated by 91 nucleotides LRK54_RS02715 and LRK54_RS02720 are separated by 21 nucleotides
LRK54_RS02705: LRK54_RS02705 - nitronate monooxygenase, at 579,161 to 580,228
_RS02705
LRK54_RS02710: LRK54_RS02710 - pentapeptide MXKDX repeat protein, at 580,322 to 580,594
_RS02710
LRK54_RS02715: LRK54_RS02715 - DUF1345 domain-containing protein, at 580,686 to 581,378
_RS02715
LRK54_RS02720: LRK54_RS02720 - N-acetyltransferase, at 581,400 to 581,675
_RS02720
Position (kb) 580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 579.342 kb on + strand, within LRK54_RS02705 at 579.343 kb on - strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.096 kb on - strand, within LRK54_RS02705 at 580.096 kb on - strand, within LRK54_RS02705 at 580.096 kb on - strand, within LRK54_RS02705 at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.222 kb on + strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.223 kb on - strand at 580.262 kb on - strand at 580.563 kb on - strand, within LRK54_RS02710 at 580.563 kb on - strand, within LRK54_RS02710 at 580.673 kb on + strand at 580.673 kb on + strand at 580.673 kb on + strand at 580.674 kb on - strand at 580.674 kb on - strand at 580.674 kb on - strand at 580.674 kb on - strand at 580.709 kb on + strand at 580.709 kb on + strand at 580.709 kb on + strand at 580.709 kb on + strand at 580.710 kb on - strand at 580.710 kb on - strand at 580.710 kb on - strand at 580.710 kb on - strand at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.786 kb on + strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.787 kb on - strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.846 kb on + strand, within LRK54_RS02715 at 580.847 kb on - strand, within LRK54_RS02715 at 580.847 kb on - strand, within LRK54_RS02715 at 580.861 kb on + strand, within LRK54_RS02715 at 580.861 kb on + strand, within LRK54_RS02715 at 580.861 kb on + strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.862 kb on - strand, within LRK54_RS02715 at 580.877 kb on + strand, within LRK54_RS02715 at 580.878 kb on - strand, within LRK54_RS02715 at 580.920 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.921 kb on + strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.922 kb on - strand, within LRK54_RS02715 at 580.925 kb on - strand, within LRK54_RS02715 at 580.925 kb on - strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.936 kb on + strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 580.937 kb on - strand, within LRK54_RS02715 at 581.420 kb on - strand at 581.420 kb on - strand at 581.420 kb on - strand at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.452 kb on + strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720 at 581.453 kb on - strand, within LRK54_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 579,342 + LRK54_RS02705 0.17 +0.4 579,343 - LRK54_RS02705 0.17 +1.1 579,835 + LRK54_RS02705 0.63 -1.2 579,835 + LRK54_RS02705 0.63 +0.6 579,835 + LRK54_RS02705 0.63 -0.8 579,835 + LRK54_RS02705 0.63 -0.9 579,835 + LRK54_RS02705 0.63 +1.8 579,835 + LRK54_RS02705 0.63 -0.4 579,836 - LRK54_RS02705 0.63 -1.9 579,836 - LRK54_RS02705 0.63 -0.9 579,836 - LRK54_RS02705 0.63 -2.4 579,836 - LRK54_RS02705 0.63 -1.5 579,836 - LRK54_RS02705 0.63 +0.0 579,836 - LRK54_RS02705 0.63 -2.3 580,032 + LRK54_RS02705 0.82 -1.9 580,032 + LRK54_RS02705 0.82 -0.9 580,032 + LRK54_RS02705 0.82 -1.2 580,032 + LRK54_RS02705 0.82 +0.8 580,032 + LRK54_RS02705 0.82 -2.4 580,032 + LRK54_RS02705 0.82 -1.4 580,033 - LRK54_RS02705 0.82 +1.1 580,033 - LRK54_RS02705 0.82 -0.4 580,033 - LRK54_RS02705 0.82 +2.1 580,033 - LRK54_RS02705 0.82 -1.1 580,033 - LRK54_RS02705 0.82 +1.6 580,096 - LRK54_RS02705 0.88 +1.6 580,096 - LRK54_RS02705 0.88 +0.6 580,096 - LRK54_RS02705 0.88 -0.2 580,222 + -0.4 580,222 + +0.7 580,222 + -1.1 580,222 + -0.6 580,222 + -0.7 580,222 + +0.2 580,222 + -1.2 580,222 + +0.8 580,222 + +0.0 580,222 + +1.0 580,222 + +1.0 580,222 + +2.1 580,222 + -0.6 580,222 + +0.8 580,222 + +1.7 580,222 + +0.6 580,222 + -2.2 580,222 + -1.5 580,222 + +0.3 580,222 + +0.1 580,222 + +0.1 580,222 + +0.1 580,222 + +0.7 580,222 + -1.9 580,222 + -0.8 580,222 + -0.0 580,222 + -0.8 580,222 + -2.2 580,222 + -0.3 580,222 + +0.8 580,222 + -1.4 580,222 + -0.7 580,222 + -2.7 580,222 + -1.1 580,222 + +0.3 580,222 + -0.1 580,222 + -0.3 580,223 - +0.3 580,223 - +1.1 580,223 - -2.0 580,223 - -1.4 580,223 - +1.6 580,223 - -0.4 580,223 - -1.9 580,223 - -1.6 580,223 - -0.7 580,223 - -1.7 580,223 - -0.2 580,223 - +1.6 580,223 - -0.9 580,223 - -1.2 580,223 - +3.1 580,223 - +2.1 580,223 - -0.7 580,223 - +3.1 580,223 - +2.1 580,223 - -2.1 580,223 - -0.6 580,223 - -1.2 580,223 - -0.3 580,223 - -2.4 580,223 - +0.8 580,223 - -1.2 580,223 - +3.1 580,223 - +0.8 580,223 - -1.9 580,223 - -1.0 580,223 - +0.6 580,223 - +0.3 580,223 - -0.3 580,223 - -0.9 580,262 - -1.6 580,563 - LRK54_RS02710 0.88 -0.4 580,563 - LRK54_RS02710 0.88 -2.3 580,673 + -0.6 580,673 + -1.9 580,673 + -2.4 580,674 - -1.0 580,674 - -2.1 580,674 - +0.9 580,674 - -1.2 580,709 + +0.8 580,709 + +0.1 580,709 + +1.3 580,709 + +1.3 580,710 - -1.8 580,710 - +0.4 580,710 - -0.9 580,710 - -1.2 580,786 + LRK54_RS02715 0.14 -1.7 580,786 + LRK54_RS02715 0.14 -3.4 580,786 + LRK54_RS02715 0.14 +0.8 580,786 + LRK54_RS02715 0.14 -0.7 580,786 + LRK54_RS02715 0.14 -0.4 580,786 + LRK54_RS02715 0.14 -0.9 580,786 + LRK54_RS02715 0.14 +1.1 580,786 + LRK54_RS02715 0.14 -0.7 580,786 + LRK54_RS02715 0.14 +1.2 580,786 + LRK54_RS02715 0.14 +2.1 580,786 + LRK54_RS02715 0.14 -2.3 580,786 + LRK54_RS02715 0.14 -0.6 580,786 + LRK54_RS02715 0.14 +0.3 580,786 + LRK54_RS02715 0.14 +1.1 580,786 + LRK54_RS02715 0.14 -2.0 580,786 + LRK54_RS02715 0.14 +1.1 580,786 + LRK54_RS02715 0.14 -0.4 580,786 + LRK54_RS02715 0.14 -2.6 580,786 + LRK54_RS02715 0.14 -2.6 580,786 + LRK54_RS02715 0.14 -1.2 580,786 + LRK54_RS02715 0.14 +2.1 580,787 - LRK54_RS02715 0.15 +0.1 580,787 - LRK54_RS02715 0.15 +1.6 580,787 - LRK54_RS02715 0.15 -0.0 580,787 - LRK54_RS02715 0.15 +1.3 580,787 - LRK54_RS02715 0.15 +1.1 580,787 - LRK54_RS02715 0.15 +3.1 580,787 - LRK54_RS02715 0.15 +0.1 580,787 - LRK54_RS02715 0.15 -0.8 580,787 - LRK54_RS02715 0.15 -0.8 580,787 - LRK54_RS02715 0.15 -1.8 580,787 - LRK54_RS02715 0.15 -1.8 580,787 - LRK54_RS02715 0.15 -0.3 580,787 - LRK54_RS02715 0.15 -1.6 580,787 - LRK54_RS02715 0.15 +0.5 580,787 - LRK54_RS02715 0.15 -1.2 580,787 - LRK54_RS02715 0.15 -2.3 580,787 - LRK54_RS02715 0.15 +1.8 580,846 + LRK54_RS02715 0.23 -1.5 580,846 + LRK54_RS02715 0.23 +0.1 580,846 + LRK54_RS02715 0.23 -1.2 580,846 + LRK54_RS02715 0.23 -0.4 580,846 + LRK54_RS02715 0.23 -0.8 580,846 + LRK54_RS02715 0.23 -1.9 580,846 + LRK54_RS02715 0.23 -0.4 580,847 - LRK54_RS02715 0.23 +0.8 580,847 - LRK54_RS02715 0.23 -1.6 580,861 + LRK54_RS02715 0.25 -0.6 580,861 + LRK54_RS02715 0.25 +0.3 580,861 + LRK54_RS02715 0.25 -0.4 580,862 - LRK54_RS02715 0.25 +1.9 580,862 - LRK54_RS02715 0.25 -0.8 580,862 - LRK54_RS02715 0.25 -0.7 580,862 - LRK54_RS02715 0.25 -0.2 580,877 + LRK54_RS02715 0.28 +0.8 580,878 - LRK54_RS02715 0.28 -0.9 580,920 + LRK54_RS02715 0.34 -1.5 580,921 + LRK54_RS02715 0.34 -0.8 580,921 + LRK54_RS02715 0.34 -0.9 580,921 + LRK54_RS02715 0.34 -0.4 580,921 + LRK54_RS02715 0.34 -0.0 580,921 + LRK54_RS02715 0.34 +1.1 580,921 + LRK54_RS02715 0.34 -0.8 580,921 + LRK54_RS02715 0.34 -1.0 580,921 + LRK54_RS02715 0.34 -1.1 580,921 + LRK54_RS02715 0.34 -1.7 580,921 + LRK54_RS02715 0.34 -1.6 580,921 + LRK54_RS02715 0.34 -0.8 580,921 + LRK54_RS02715 0.34 -0.9 580,922 - LRK54_RS02715 0.34 +0.3 580,922 - LRK54_RS02715 0.34 -1.4 580,922 - LRK54_RS02715 0.34 -3.7 580,922 - LRK54_RS02715 0.34 -2.2 580,922 - LRK54_RS02715 0.34 -1.1 580,922 - LRK54_RS02715 0.34 -0.2 580,922 - LRK54_RS02715 0.34 +2.1 580,922 - LRK54_RS02715 0.34 -0.7 580,922 - LRK54_RS02715 0.34 -0.3 580,922 - LRK54_RS02715 0.34 -0.9 580,922 - LRK54_RS02715 0.34 +0.3 580,922 - LRK54_RS02715 0.34 +0.3 580,922 - LRK54_RS02715 0.34 +2.1 580,922 - LRK54_RS02715 0.34 -1.9 580,922 - LRK54_RS02715 0.34 -0.9 580,925 - LRK54_RS02715 0.34 -2.5 580,925 - LRK54_RS02715 0.34 +1.1 580,936 + LRK54_RS02715 0.36 -1.0 580,936 + LRK54_RS02715 0.36 +0.6 580,936 + LRK54_RS02715 0.36 +0.8 580,936 + LRK54_RS02715 0.36 -0.9 580,937 - LRK54_RS02715 0.36 -2.1 580,937 - LRK54_RS02715 0.36 -0.3 580,937 - LRK54_RS02715 0.36 +1.2 580,937 - LRK54_RS02715 0.36 +0.3 580,937 - LRK54_RS02715 0.36 -0.2 580,937 - LRK54_RS02715 0.36 +1.8 581,420 - -0.8 581,420 - -0.2 581,420 - -1.2 581,452 + LRK54_RS02720 0.19 +1.8 581,452 + LRK54_RS02720 0.19 -0.9 581,452 + LRK54_RS02720 0.19 -0.7 581,452 + LRK54_RS02720 0.19 -2.5 581,452 + LRK54_RS02720 0.19 -0.8 581,452 + LRK54_RS02720 0.19 +1.3 581,452 + LRK54_RS02720 0.19 -0.3 581,452 + LRK54_RS02720 0.19 +0.1 581,452 + LRK54_RS02720 0.19 -1.6 581,452 + LRK54_RS02720 0.19 +0.1 581,452 + LRK54_RS02720 0.19 +1.1 581,452 + LRK54_RS02720 0.19 -2.2 581,452 + LRK54_RS02720 0.19 -0.4 581,452 + LRK54_RS02720 0.19 -2.3 581,453 - LRK54_RS02720 0.19 -1.7 581,453 - LRK54_RS02720 0.19 +1.2 581,453 - LRK54_RS02720 0.19 +0.4 581,453 - LRK54_RS02720 0.19 -1.3 581,453 - LRK54_RS02720 0.19 -1.6 581,453 - LRK54_RS02720 0.19 -1.4 581,453 - LRK54_RS02720 0.19 -2.4 581,453 - LRK54_RS02720 0.19 -0.2 581,453 - LRK54_RS02720 0.19 -0.4 581,453 - LRK54_RS02720 0.19 -1.0 581,453 - LRK54_RS02720 0.19 +0.5 581,453 - LRK54_RS02720 0.19 -0.9 581,453 - LRK54_RS02720 0.19 +1.4 581,453 - LRK54_RS02720 0.19 +0.3 581,453 - LRK54_RS02720 0.19 +1.0 581,453 - LRK54_RS02720 0.19 -0.7
Or see this region's nucleotide sequence