Experiment: McCas_formate_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08690 and MMP_RS08695 are separated by 17 nucleotides MMP_RS08695 and MMP_RS08700 are separated by 10 nucleotides MMP_RS08700 and MMP_RS08705 are separated by 12 nucleotides MMP_RS08705 and MMP_RS08710 are separated by 1 nucleotides
MMP_RS08690: MMP_RS08690 - RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5, at 1,627,999 to 1,629,000
_RS08690
MMP_RS08695: MMP_RS08695 - ferredoxin family protein, at 1,629,018 to 1,629,224
_RS08695
MMP_RS08700: MMP_RS08700 - hypothetical protein, at 1,629,235 to 1,629,918
_RS08700
MMP_RS08705: MMP_RS08705 - sulfopyruvate decarboxylase subunit beta, at 1,629,931 to 1,630,488
_RS08705
MMP_RS08710: MMP_RS08710 - HisA/HisF family protein, at 1,630,490 to 1,631,158
_RS08710
Position (kb) 1629
1630 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1628.279 kb on + strand, within MMP_RS08690 at 1628.456 kb on - strand, within MMP_RS08690 at 1628.456 kb on - strand, within MMP_RS08690 at 1628.457 kb on + strand, within MMP_RS08690 at 1628.486 kb on + strand, within MMP_RS08690 at 1628.489 kb on - strand, within MMP_RS08690 at 1628.618 kb on + strand, within MMP_RS08690 at 1628.619 kb on - strand, within MMP_RS08690 at 1628.620 kb on + strand, within MMP_RS08690 at 1628.622 kb on + strand, within MMP_RS08690 at 1628.712 kb on + strand, within MMP_RS08690 at 1628.872 kb on + strand, within MMP_RS08690 at 1628.876 kb on - strand, within MMP_RS08690 at 1628.918 kb on - strand at 1628.961 kb on - strand at 1628.988 kb on + strand at 1629.125 kb on + strand at 1629.442 kb on - strand, within MMP_RS08700 at 1629.490 kb on - strand, within MMP_RS08700 at 1629.491 kb on + strand, within MMP_RS08700 at 1629.495 kb on + strand, within MMP_RS08700 at 1629.532 kb on + strand, within MMP_RS08700 at 1629.559 kb on - strand, within MMP_RS08700 at 1629.561 kb on - strand, within MMP_RS08700 at 1629.691 kb on - strand, within MMP_RS08700 at 1629.691 kb on - strand, within MMP_RS08700 at 1629.692 kb on + strand, within MMP_RS08700 at 1629.701 kb on + strand, within MMP_RS08700 at 1629.864 kb on + strand at 1629.917 kb on + strand at 1629.965 kb on + strand at 1629.979 kb on - strand at 1630.030 kb on - strand, within MMP_RS08705 at 1630.031 kb on + strand, within MMP_RS08705 at 1630.094 kb on + strand, within MMP_RS08705 at 1630.143 kb on - strand, within MMP_RS08705 at 1630.144 kb on + strand, within MMP_RS08705 at 1630.283 kb on + strand, within MMP_RS08705 at 1630.291 kb on - strand, within MMP_RS08705 at 1630.419 kb on - strand, within MMP_RS08705 at 1630.420 kb on + strand, within MMP_RS08705 at 1630.488 kb on - strand at 1630.492 kb on + strand at 1630.521 kb on + strand at 1630.609 kb on - strand at 1630.610 kb on + strand at 1630.626 kb on - strand at 1630.626 kb on - strand at 1630.627 kb on + strand at 1630.627 kb on + strand at 1630.627 kb on + strand at 1630.652 kb on - strand at 1630.655 kb on + strand at 1630.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM remove 1,628,279 + MMP_RS08690 0.28 +0.9 1,628,456 - MMP_RS08690 0.46 +0.4 1,628,456 - MMP_RS08690 0.46 -0.0 1,628,457 + MMP_RS08690 0.46 +0.5 1,628,486 + MMP_RS08690 0.49 +1.1 1,628,489 - MMP_RS08690 0.49 +0.4 1,628,618 + MMP_RS08690 0.62 -0.9 1,628,619 - MMP_RS08690 0.62 +0.1 1,628,620 + MMP_RS08690 0.62 -0.5 1,628,622 + MMP_RS08690 0.62 +0.1 1,628,712 + MMP_RS08690 0.71 +0.4 1,628,872 + MMP_RS08690 0.87 +0.2 1,628,876 - MMP_RS08690 0.88 -0.0 1,628,918 - -0.6 1,628,961 - -0.0 1,628,988 + -0.7 1,629,125 + +3.9 1,629,442 - MMP_RS08700 0.30 +0.7 1,629,490 - MMP_RS08700 0.37 -0.7 1,629,491 + MMP_RS08700 0.37 -0.3 1,629,495 + MMP_RS08700 0.38 -0.5 1,629,532 + MMP_RS08700 0.43 -0.4 1,629,559 - MMP_RS08700 0.47 -0.4 1,629,561 - MMP_RS08700 0.48 +0.3 1,629,691 - MMP_RS08700 0.67 -0.1 1,629,691 - MMP_RS08700 0.67 -0.4 1,629,692 + MMP_RS08700 0.67 +0.0 1,629,701 + MMP_RS08700 0.68 -0.2 1,629,864 + -0.0 1,629,917 + -0.4 1,629,965 + -1.2 1,629,979 - +0.3 1,630,030 - MMP_RS08705 0.18 +1.1 1,630,031 + MMP_RS08705 0.18 -0.4 1,630,094 + MMP_RS08705 0.29 +0.6 1,630,143 - MMP_RS08705 0.38 +0.2 1,630,144 + MMP_RS08705 0.38 +0.3 1,630,283 + MMP_RS08705 0.63 -1.0 1,630,291 - MMP_RS08705 0.65 -0.5 1,630,419 - MMP_RS08705 0.87 +0.8 1,630,420 + MMP_RS08705 0.88 -1.6 1,630,488 - -0.1 1,630,492 + -0.3 1,630,521 + -0.1 1,630,609 - -0.5 1,630,610 + -0.9 1,630,626 - -0.7 1,630,626 - -0.9 1,630,627 + -0.1 1,630,627 + -1.6 1,630,627 + -0.2 1,630,652 - -1.2 1,630,655 + -0.7 1,630,661 - +0.1
Or see this region's nucleotide sequence