Experiment: McCas_formate_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03660 and MMP_RS03665 are separated by 23 nucleotides MMP_RS03665 and MMP_RS03670 are separated by 194 nucleotides MMP_RS03670 and MMP_RS03675 are separated by 36 nucleotides MMP_RS03675 and MMP_RS03680 are separated by 4 nucleotides
MMP_RS03660: MMP_RS03660 - MATE family efflux transporter, at 689,869 to 691,212
_RS03660
MMP_RS03665: MMP_RS03665 - PadR family transcriptional regulator, at 691,236 to 691,787
_RS03665
MMP_RS03670: MMP_RS03670 - DUF1890 domain-containing protein, at 691,982 to 692,425
_RS03670
MMP_RS03675: MMP_RS03675 - RimK family alpha-L-glutamate ligase, at 692,462 to 693,340
_RS03675
MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367
_RS03680
Position (kb) 691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 691.007 kb on + strand, within MMP_RS03660 at 691.106 kb on + strand at 691.108 kb on + strand at 691.238 kb on + strand at 691.633 kb on + strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.640 kb on + strand, within MMP_RS03665 at 691.640 kb on + strand, within MMP_RS03665 at 691.642 kb on - strand, within MMP_RS03665 at 691.642 kb on - strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.717 kb on - strand, within MMP_RS03665 at 691.717 kb on - strand, within MMP_RS03665 at 691.718 kb on + strand, within MMP_RS03665 at 691.718 kb on + strand, within MMP_RS03665 at 691.718 kb on + strand, within MMP_RS03665 at 691.758 kb on - strand at 691.759 kb on + strand at 691.789 kb on + strand at 691.801 kb on - strand at 691.839 kb on - strand at 691.843 kb on - strand at 691.843 kb on - strand at 691.844 kb on + strand at 691.845 kb on - strand at 691.871 kb on - strand at 691.875 kb on - strand at 691.876 kb on + strand at 691.898 kb on + strand at 691.905 kb on + strand at 691.933 kb on + strand at 691.956 kb on + strand at 691.956 kb on + strand at 691.956 kb on + strand at 691.956 kb on + strand at 691.967 kb on + strand at 692.053 kb on - strand, within MMP_RS03670 at 692.080 kb on + strand, within MMP_RS03670 at 692.141 kb on - strand, within MMP_RS03670 at 692.243 kb on - strand, within MMP_RS03670 at 692.251 kb on + strand, within MMP_RS03670 at 692.256 kb on + strand, within MMP_RS03670 at 692.423 kb on - strand at 692.442 kb on + strand at 692.442 kb on + strand at 692.461 kb on - strand at 692.462 kb on + strand at 692.548 kb on - strand at 692.551 kb on - strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.553 kb on - strand, within MMP_RS03675 at 692.609 kb on + strand, within MMP_RS03675 at 692.617 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.628 kb on - strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.709 kb on + strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.908 kb on + strand, within MMP_RS03675 at 692.983 kb on - strand, within MMP_RS03675 at 693.198 kb on - strand, within MMP_RS03675 at 693.199 kb on + strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.286 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM remove 691,007 + MMP_RS03660 0.85 -0.1 691,106 + +1.6 691,108 + +0.6 691,238 + -0.7 691,633 + MMP_RS03665 0.72 -0.6 691,639 - MMP_RS03665 0.73 +0.7 691,639 - MMP_RS03665 0.73 +0.4 691,639 - MMP_RS03665 0.73 -0.2 691,639 - MMP_RS03665 0.73 -0.2 691,639 - MMP_RS03665 0.73 -0.1 691,640 + MMP_RS03665 0.73 -0.2 691,640 + MMP_RS03665 0.73 +0.7 691,642 - MMP_RS03665 0.74 -0.5 691,642 - MMP_RS03665 0.74 -0.1 691,643 + MMP_RS03665 0.74 +0.5 691,643 + MMP_RS03665 0.74 +0.8 691,643 + MMP_RS03665 0.74 -0.6 691,643 + MMP_RS03665 0.74 -0.3 691,643 + MMP_RS03665 0.74 +0.5 691,717 - MMP_RS03665 0.87 +0.1 691,717 - MMP_RS03665 0.87 +1.2 691,718 + MMP_RS03665 0.87 -0.3 691,718 + MMP_RS03665 0.87 +0.1 691,718 + MMP_RS03665 0.87 -0.2 691,758 - +0.9 691,759 + +0.6 691,789 + -1.0 691,801 - +0.8 691,839 - +0.7 691,843 - -0.6 691,843 - -0.5 691,844 + +0.2 691,845 - -0.5 691,871 - -0.3 691,875 - +0.8 691,876 + +0.8 691,898 + -0.2 691,905 + -1.4 691,933 + +0.3 691,956 + +0.4 691,956 + -1.9 691,956 + +0.3 691,956 + -0.2 691,967 + +4.3 692,053 - MMP_RS03670 0.16 -1.1 692,080 + MMP_RS03670 0.22 -0.0 692,141 - MMP_RS03670 0.36 +0.2 692,243 - MMP_RS03670 0.59 +0.2 692,251 + MMP_RS03670 0.61 -0.1 692,256 + MMP_RS03670 0.62 -0.0 692,423 - -3.1 692,442 + +0.6 692,442 + -0.0 692,461 - +0.6 692,462 + +4.5 692,548 - +5.4 692,551 - MMP_RS03675 0.10 -0.5 692,552 + MMP_RS03675 0.10 +0.4 692,552 + MMP_RS03675 0.10 -0.5 692,553 - MMP_RS03675 0.10 +0.5 692,609 + MMP_RS03675 0.17 -0.6 692,617 - MMP_RS03675 0.18 -0.6 692,619 - MMP_RS03675 0.18 +0.2 692,619 - MMP_RS03675 0.18 +0.4 692,620 + MMP_RS03675 0.18 +1.6 692,620 + MMP_RS03675 0.18 -0.7 692,628 - MMP_RS03675 0.19 +0.8 692,692 + MMP_RS03675 0.26 -0.7 692,692 + MMP_RS03675 0.26 -0.5 692,697 + MMP_RS03675 0.27 +0.8 692,697 + MMP_RS03675 0.27 -1.0 692,709 + MMP_RS03675 0.28 -1.9 692,721 - MMP_RS03675 0.29 -0.0 692,721 - MMP_RS03675 0.29 -0.2 692,721 - MMP_RS03675 0.29 +1.4 692,721 - MMP_RS03675 0.29 +0.8 692,830 - MMP_RS03675 0.42 +0.5 692,830 - MMP_RS03675 0.42 +0.6 692,908 + MMP_RS03675 0.51 +0.2 692,983 - MMP_RS03675 0.59 +0.0 693,198 - MMP_RS03675 0.84 +0.1 693,199 + MMP_RS03675 0.84 -0.1 693,240 - MMP_RS03675 0.89 +0.1 693,240 - MMP_RS03675 0.89 -0.7 693,286 + -0.1 693,359 + -0.3 693,359 + +0.7 693,359 + -0.3 693,359 + +0.0 693,361 + +0.0
Or see this region's nucleotide sequence