Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02775

Experiment: McCas_formate_complete Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02765 and MMP_RS02770 are separated by 194 nucleotidesMMP_RS02770 and MMP_RS02775 are separated by 40 nucleotidesMMP_RS02775 and MMP_RS02780 are separated by 515 nucleotides MMP_RS02765: MMP_RS02765 - ABC transporter ATP-binding protein, at 529,146 to 529,850 _RS02765 MMP_RS02770: MMP_RS02770 - hypothetical protein, at 530,045 to 530,620 _RS02770 MMP_RS02775: MMP_RS02775 - hypothetical protein, at 530,661 to 531,122 _RS02775 MMP_RS02780: MMP_RS02780 - hypothetical protein, at 531,638 to 532,351 _RS02780 Position (kb) 530 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 529.694 kb on - strand, within MMP_RS02765at 529.850 kb on - strandat 529.946 kb on + strandat 529.972 kb on + strandat 530.014 kb on - strandat 530.014 kb on - strandat 530.042 kb on - strandat 530.102 kb on + strandat 530.104 kb on - strand, within MMP_RS02770at 530.104 kb on - strand, within MMP_RS02770at 530.104 kb on - strand, within MMP_RS02770at 530.104 kb on - strand, within MMP_RS02770at 530.434 kb on + strand, within MMP_RS02770at 530.459 kb on - strand, within MMP_RS02770at 530.543 kb on + strand, within MMP_RS02770at 530.597 kb on - strandat 530.632 kb on - strandat 530.634 kb on - strandat 530.662 kb on - strandat 530.786 kb on + strand, within MMP_RS02775at 530.807 kb on - strand, within MMP_RS02775at 530.808 kb on + strand, within MMP_RS02775at 530.852 kb on - strand, within MMP_RS02775at 530.853 kb on + strand, within MMP_RS02775at 530.861 kb on - strand, within MMP_RS02775at 530.873 kb on - strand, within MMP_RS02775at 530.876 kb on - strand, within MMP_RS02775at 530.877 kb on + strand, within MMP_RS02775at 530.880 kb on + strand, within MMP_RS02775at 530.895 kb on + strand, within MMP_RS02775at 530.898 kb on - strand, within MMP_RS02775at 531.000 kb on - strand, within MMP_RS02775at 531.001 kb on + strand, within MMP_RS02775at 531.003 kb on - strand, within MMP_RS02775at 531.003 kb on - strand, within MMP_RS02775at 531.004 kb on + strand, within MMP_RS02775at 531.008 kb on - strand, within MMP_RS02775at 531.008 kb on - strand, within MMP_RS02775at 531.011 kb on - strand, within MMP_RS02775at 531.015 kb on - strand, within MMP_RS02775at 531.135 kb on - strandat 531.165 kb on + strandat 531.222 kb on - strandat 531.242 kb on - strandat 531.254 kb on - strandat 531.270 kb on - strandat 531.271 kb on + strandat 531.271 kb on + strandat 531.280 kb on - strandat 531.286 kb on + strandat 531.301 kb on - strandat 531.348 kb on - strandat 531.445 kb on - strandat 531.463 kb on + strandat 531.465 kb on + strandat 531.525 kb on + strandat 531.525 kb on + strandat 531.525 kb on + strandat 531.526 kb on - strandat 531.527 kb on + strandat 531.529 kb on + strandat 531.529 kb on + strandat 531.531 kb on - strandat 531.531 kb on - strandat 531.531 kb on - strandat 531.532 kb on + strandat 531.584 kb on - strandat 531.591 kb on + strandat 531.604 kb on - strandat 531.605 kb on + strandat 531.605 kb on + strandat 531.605 kb on + strandat 531.605 kb on + strandat 531.613 kb on - strandat 531.623 kb on + strandat 531.733 kb on - strand, within MMP_RS02780at 531.736 kb on + strand, within MMP_RS02780at 531.912 kb on - strand, within MMP_RS02780at 531.978 kb on - strand, within MMP_RS02780at 531.979 kb on + strand, within MMP_RS02780at 531.979 kb on + strand, within MMP_RS02780at 531.981 kb on - strand, within MMP_RS02780at 531.981 kb on - strand, within MMP_RS02780at 531.982 kb on + strand, within MMP_RS02780at 531.982 kb on + strand, within MMP_RS02780at 531.983 kb on - strand, within MMP_RS02780at 531.983 kb on - strand, within MMP_RS02780at 531.983 kb on - strand, within MMP_RS02780at 531.983 kb on - strand, within MMP_RS02780at 531.984 kb on + strand, within MMP_RS02780at 531.984 kb on + strand, within MMP_RS02780at 531.987 kb on - strand, within MMP_RS02780at 531.988 kb on + strand, within MMP_RS02780at 531.993 kb on - strand, within MMP_RS02780at 532.009 kb on - strand, within MMP_RS02780at 532.049 kb on + strand, within MMP_RS02780at 532.086 kb on + strand, within MMP_RS02780

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM
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529,694 - MMP_RS02765 0.78 +0.2
529,850 - -1.4
529,946 + +0.2
529,972 + +0.6
530,014 - +0.2
530,014 - +0.2
530,042 - -0.2
530,102 + +0.4
530,104 - MMP_RS02770 0.10 +0.6
530,104 - MMP_RS02770 0.10 -0.1
530,104 - MMP_RS02770 0.10 -0.1
530,104 - MMP_RS02770 0.10 +3.5
530,434 + MMP_RS02770 0.68 +0.0
530,459 - MMP_RS02770 0.72 -0.6
530,543 + MMP_RS02770 0.86 -0.3
530,597 - -0.4
530,632 - +0.4
530,634 - -0.7
530,662 - +0.4
530,786 + MMP_RS02775 0.27 -0.2
530,807 - MMP_RS02775 0.32 +0.2
530,808 + MMP_RS02775 0.32 -0.1
530,852 - MMP_RS02775 0.41 +0.4
530,853 + MMP_RS02775 0.42 -0.8
530,861 - MMP_RS02775 0.43 -1.1
530,873 - MMP_RS02775 0.46 -0.0
530,876 - MMP_RS02775 0.47 +0.5
530,877 + MMP_RS02775 0.47 -0.1
530,880 + MMP_RS02775 0.47 -0.4
530,895 + MMP_RS02775 0.51 -0.2
530,898 - MMP_RS02775 0.51 -0.7
531,000 - MMP_RS02775 0.73 -0.2
531,001 + MMP_RS02775 0.74 -2.9
531,003 - MMP_RS02775 0.74 +1.0
531,003 - MMP_RS02775 0.74 +0.4
531,004 + MMP_RS02775 0.74 -0.8
531,008 - MMP_RS02775 0.75 -0.1
531,008 - MMP_RS02775 0.75 +0.1
531,011 - MMP_RS02775 0.76 -0.9
531,015 - MMP_RS02775 0.77 -0.5
531,135 - +0.6
531,165 + -0.1
531,222 - +1.5
531,242 - +0.3
531,254 - +0.2
531,270 - +0.4
531,271 + +0.3
531,271 + -0.4
531,280 - +0.2
531,286 + +0.2
531,301 - -0.4
531,348 - +0.6
531,445 - -0.1
531,463 + -0.1
531,465 + -0.7
531,525 + +0.1
531,525 + +0.0
531,525 + -0.8
531,526 - +0.6
531,527 + -0.3
531,529 + +1.1
531,529 + -0.3
531,531 - +0.1
531,531 - +0.3
531,531 - -1.8
531,532 + -0.4
531,584 - +0.7
531,591 + +0.6
531,604 - +0.2
531,605 + -0.6
531,605 + +1.3
531,605 + +0.1
531,605 + +2.1
531,613 - -0.9
531,623 + -0.4
531,733 - MMP_RS02780 0.13 +0.4
531,736 + MMP_RS02780 0.14 +0.6
531,912 - MMP_RS02780 0.38 +0.1
531,978 - MMP_RS02780 0.48 +0.1
531,979 + MMP_RS02780 0.48 +0.4
531,979 + MMP_RS02780 0.48 +1.4
531,981 - MMP_RS02780 0.48 +0.1
531,981 - MMP_RS02780 0.48 +1.0
531,982 + MMP_RS02780 0.48 +0.0
531,982 + MMP_RS02780 0.48 +0.9
531,983 - MMP_RS02780 0.48 -0.3
531,983 - MMP_RS02780 0.48 +0.8
531,983 - MMP_RS02780 0.48 +0.6
531,983 - MMP_RS02780 0.48 +0.4
531,984 + MMP_RS02780 0.48 +1.5
531,984 + MMP_RS02780 0.48 +0.7
531,987 - MMP_RS02780 0.49 -0.3
531,988 + MMP_RS02780 0.49 +1.7
531,993 - MMP_RS02780 0.50 +0.0
532,009 - MMP_RS02780 0.52 +1.7
532,049 + MMP_RS02780 0.58 +1.1
532,086 + MMP_RS02780 0.63 +0.2

Or see this region's nucleotide sequence