Experiment: McCas_formate_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02465 and MMP_RS02470 are separated by 365 nucleotides MMP_RS02470 and MMP_RS02475 are separated by 154 nucleotides MMP_RS02475 and MMP_RS02480 are separated by 98 nucleotides MMP_RS02480 and MMP_RS02485 are separated by 2 nucleotides MMP_RS02485 and MMP_RS02490 overlap by 14 nucleotides
MMP_RS02465: MMP_RS02465 - hypothetical protein, at 462,521 to 463,246
_RS02465
MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974
_RS02470
MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380
_RS02475
MMP_RS02480: MMP_RS02480 - hypothetical protein, at 464,479 to 464,997
_RS02480
MMP_RS02485: MMP_RS02485 - DUF2080 family transposase-associated protein, at 465,000 to 465,224
_RS02485
MMP_RS02490: MMP_RS02490 - hypothetical protein, at 465,211 to 465,405
_RS02490
Position (kb) 464
465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 463.140 kb on - strand, within MMP_RS02465 at 463.145 kb on - strand, within MMP_RS02465 at 463.275 kb on - strand at 463.276 kb on + strand at 463.276 kb on + strand at 463.277 kb on - strand at 463.375 kb on + strand at 463.380 kb on - strand at 463.387 kb on - strand at 463.388 kb on + strand at 463.404 kb on - strand at 463.404 kb on - strand at 463.457 kb on - strand at 463.457 kb on - strand at 463.457 kb on - strand at 463.476 kb on - strand at 463.481 kb on - strand at 463.499 kb on - strand at 463.509 kb on - strand at 463.510 kb on + strand at 463.517 kb on - strand at 463.517 kb on - strand at 463.527 kb on - strand at 463.531 kb on - strand at 463.532 kb on + strand at 463.532 kb on + strand at 463.547 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.637 kb on + strand at 463.676 kb on + strand, within MMP_RS02470 at 463.819 kb on - strand, within MMP_RS02470 at 464.000 kb on + strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.010 kb on + strand at 464.011 kb on - strand at 464.012 kb on + strand at 464.032 kb on - strand at 464.103 kb on + strand at 464.103 kb on + strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.106 kb on + strand at 464.106 kb on + strand at 464.198 kb on - strand, within MMP_RS02475 at 464.199 kb on + strand, within MMP_RS02475 at 464.236 kb on - strand, within MMP_RS02475 at 464.364 kb on + strand at 464.455 kb on - strand at 464.676 kb on + strand, within MMP_RS02480 at 464.825 kb on - strand, within MMP_RS02480 at 465.306 kb on - strand, within MMP_RS02490 at 465.306 kb on - strand, within MMP_RS02490 at 465.307 kb on + strand, within MMP_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM remove 463,140 - MMP_RS02465 0.85 -0.2 463,145 - MMP_RS02465 0.86 -0.1 463,275 - +0.1 463,276 + +0.9 463,276 + +0.1 463,277 - +0.2 463,375 + +0.6 463,380 - -0.0 463,387 - -0.4 463,388 + +1.0 463,404 - +5.5 463,404 - +1.1 463,457 - +0.0 463,457 - +0.1 463,457 - -3.4 463,476 - -1.6 463,481 - -0.5 463,499 - +0.8 463,509 - -0.2 463,510 + -0.5 463,517 - +0.1 463,517 - -0.4 463,527 - -0.6 463,531 - +0.1 463,532 + +0.4 463,532 + +1.2 463,547 - -1.1 463,551 - +0.2 463,551 - +0.9 463,551 - +0.4 463,637 + +0.4 463,676 + MMP_RS02470 0.18 -0.1 463,819 - MMP_RS02470 0.57 +0.3 464,000 + -0.8 464,009 - -0.2 464,009 - -1.0 464,009 - +0.8 464,010 + +1.1 464,011 - +0.9 464,012 + +0.2 464,032 - -0.7 464,103 + +0.1 464,103 + -2.0 464,105 - +1.4 464,105 - -0.9 464,105 - +0.7 464,106 + +0.4 464,106 + +0.8 464,198 - MMP_RS02475 0.27 -0.3 464,199 + MMP_RS02475 0.28 +0.2 464,236 - MMP_RS02475 0.42 -0.6 464,364 + +0.4 464,455 - -0.1 464,676 + MMP_RS02480 0.38 +0.9 464,825 - MMP_RS02480 0.67 -0.0 465,306 - MMP_RS02490 0.49 -0.3 465,306 - MMP_RS02490 0.49 -0.8 465,307 + MMP_RS02490 0.49 -0.9
Or see this region's nucleotide sequence