Experiment: McCas_formate_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01190 and MMP_RS01195 are separated by 2 nucleotides MMP_RS01195 and MMP_RS01200 are separated by 120 nucleotides MMP_RS01200 and MMP_RS01205 are separated by 368 nucleotides
MMP_RS01190: MMP_RS01190 - cadmium-translocating P-type ATPase, at 222,645 to 224,720
_RS01190
MMP_RS01195: MMP_RS01195 - metalloregulator ArsR/SmtB family transcription factor, at 224,723 to 225,067
_RS01195
MMP_RS01200: MMP_RS01200 - hypothetical protein, at 225,188 to 225,925
_RS01200
MMP_RS01205: MMP_RS01205 - manganese-dependent inorganic pyrophosphatase, at 226,294 to 227,217
_RS01205
Position (kb) 225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 224.265 kb on - strand, within MMP_RS01190 at 224.349 kb on + strand, within MMP_RS01190 at 224.367 kb on - strand, within MMP_RS01190 at 224.370 kb on - strand, within MMP_RS01190 at 224.374 kb on - strand, within MMP_RS01190 at 224.485 kb on - strand, within MMP_RS01190 at 224.529 kb on - strand at 224.599 kb on + strand at 224.725 kb on + strand at 224.966 kb on + strand, within MMP_RS01195 at 225.125 kb on + strand at 225.187 kb on - strand at 225.187 kb on - strand at 225.188 kb on + strand at 225.412 kb on + strand, within MMP_RS01200 at 225.412 kb on + strand, within MMP_RS01200 at 225.572 kb on + strand, within MMP_RS01200 at 225.596 kb on + strand, within MMP_RS01200 at 225.693 kb on - strand, within MMP_RS01200 at 225.946 kb on - strand at 226.015 kb on + strand at 226.068 kb on - strand at 226.091 kb on - strand at 226.169 kb on - strand at 226.208 kb on - strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.219 kb on + strand at 226.219 kb on + strand at 226.224 kb on - strand at 226.225 kb on + strand at 226.228 kb on - strand at 226.229 kb on + strand at 226.291 kb on - strand at 226.301 kb on + strand at 226.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Chloride 250 mM remove 224,265 - MMP_RS01190 0.78 +1.8 224,349 + MMP_RS01190 0.82 +0.2 224,367 - MMP_RS01190 0.83 +0.8 224,370 - MMP_RS01190 0.83 +0.6 224,374 - MMP_RS01190 0.83 +0.6 224,485 - MMP_RS01190 0.89 +0.2 224,529 - -0.4 224,599 + -1.1 224,725 + +0.5 224,966 + MMP_RS01195 0.70 +0.0 225,125 + +0.5 225,187 - -0.3 225,187 - -0.0 225,188 + +0.5 225,412 + MMP_RS01200 0.30 +0.1 225,412 + MMP_RS01200 0.30 -0.6 225,572 + MMP_RS01200 0.52 -1.1 225,596 + MMP_RS01200 0.55 +0.4 225,693 - MMP_RS01200 0.68 +0.3 225,946 - +0.8 226,015 + -0.3 226,068 - +0.9 226,091 - -0.1 226,169 - +0.1 226,208 - +0.1 226,215 + +1.2 226,215 + +0.5 226,215 + -0.9 226,218 - +0.2 226,218 - +4.0 226,218 - -0.7 226,219 + -0.7 226,219 + +0.9 226,224 - +0.4 226,225 + -0.1 226,228 - +1.9 226,229 + +0.5 226,291 - -3.5 226,301 + -1.4 226,301 + +0.1
Or see this region's nucleotide sequence