Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03960 and MMP_RS03965 are separated by 168 nucleotides MMP_RS03965 and MMP_RS08885 are separated by 114 nucleotides MMP_RS08885 and MMP_RS03975 are separated by 111 nucleotides MMP_RS03975 and MMP_RS03980 are separated by 31 nucleotides MMP_RS03980 and MMP_RS03985 are separated by 118 nucleotides
MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480
_RS03960
MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023
_RS03965
MMP_RS08885: MMP_RS08885 - tetratricopeptide repeat protein, at 753,138 to 753,662
_RS08885
MMP_RS03975: MMP_RS03975 - hypothetical protein, at 753,774 to 754,082
_RS03975
MMP_RS03980: MMP_RS03980 - hypothetical protein, at 754,114 to 754,386
_RS03980
MMP_RS03985: MMP_RS03985 - hypothetical protein, at 754,505 to 755,509
_RS03985
Position (kb) 753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 752.169 kb on + strand at 752.171 kb on - strand at 752.172 kb on + strand at 752.178 kb on + strand at 752.236 kb on - strand at 752.376 kb on - strand, within MMP_RS03960 at 752.526 kb on + strand at 752.528 kb on - strand at 752.531 kb on - strand at 752.534 kb on - strand at 752.535 kb on + strand at 752.776 kb on - strand, within MMP_RS03965 at 752.987 kb on - strand at 752.987 kb on - strand at 752.998 kb on + strand at 753.012 kb on - strand at 753.176 kb on - strand at 753.177 kb on + strand at 753.250 kb on + strand, within MMP_RS08885 at 753.269 kb on - strand, within MMP_RS08885 at 753.275 kb on - strand, within MMP_RS08885 at 753.275 kb on - strand, within MMP_RS08885 at 753.283 kb on + strand, within MMP_RS08885 at 753.285 kb on - strand, within MMP_RS08885 at 753.349 kb on + strand, within MMP_RS08885 at 753.349 kb on + strand, within MMP_RS08885 at 753.434 kb on - strand, within MMP_RS08885 at 753.447 kb on - strand, within MMP_RS08885 at 753.450 kb on - strand, within MMP_RS08885 at 753.454 kb on - strand, within MMP_RS08885 at 753.455 kb on + strand, within MMP_RS08885 at 753.478 kb on - strand, within MMP_RS08885 at 753.546 kb on + strand, within MMP_RS08885 at 753.546 kb on + strand, within MMP_RS08885 at 753.549 kb on - strand, within MMP_RS08885 at 753.549 kb on - strand, within MMP_RS08885 at 753.549 kb on - strand, within MMP_RS08885 at 753.550 kb on + strand, within MMP_RS08885 at 753.550 kb on + strand, within MMP_RS08885 at 753.553 kb on + strand, within MMP_RS08885 at 753.569 kb on - strand, within MMP_RS08885 at 753.570 kb on + strand, within MMP_RS08885 at 753.600 kb on - strand, within MMP_RS08885 at 753.608 kb on + strand, within MMP_RS08885 at 753.624 kb on - strand at 753.658 kb on - strand at 753.661 kb on + strand at 753.682 kb on + strand at 753.709 kb on - strand at 753.740 kb on + strand at 753.747 kb on + strand at 753.785 kb on - strand at 753.809 kb on - strand, within MMP_RS03975 at 753.810 kb on + strand, within MMP_RS03975 at 753.867 kb on + strand, within MMP_RS03975 at 753.869 kb on - strand, within MMP_RS03975 at 753.870 kb on + strand, within MMP_RS03975 at 753.950 kb on + strand, within MMP_RS03975 at 753.957 kb on + strand, within MMP_RS03975 at 753.967 kb on + strand, within MMP_RS03975 at 753.997 kb on - strand, within MMP_RS03975 at 753.997 kb on - strand, within MMP_RS03975 at 753.998 kb on + strand, within MMP_RS03975 at 754.000 kb on + strand, within MMP_RS03975 at 754.015 kb on - strand, within MMP_RS03975 at 754.021 kb on - strand, within MMP_RS03975 at 754.021 kb on - strand, within MMP_RS03975 at 754.022 kb on + strand, within MMP_RS03975 at 754.022 kb on + strand, within MMP_RS03975 at 754.023 kb on - strand, within MMP_RS03975 at 754.023 kb on - strand, within MMP_RS03975 at 754.023 kb on - strand, within MMP_RS03975 at 754.023 kb on - strand, within MMP_RS03975 at 754.023 kb on - strand, within MMP_RS03975 at 754.024 kb on + strand, within MMP_RS03975 at 754.025 kb on - strand, within MMP_RS03975 at 754.026 kb on + strand, within MMP_RS03975 at 754.026 kb on + strand, within MMP_RS03975 at 754.026 kb on + strand, within MMP_RS03975 at 754.070 kb on + strand at 754.073 kb on + strand at 754.177 kb on - strand, within MMP_RS03980 at 754.228 kb on + strand, within MMP_RS03980 at 754.241 kb on + strand, within MMP_RS03980 at 754.264 kb on + strand, within MMP_RS03980 at 754.266 kb on + strand, within MMP_RS03980 at 754.284 kb on - strand, within MMP_RS03980 at 754.299 kb on - strand, within MMP_RS03980 at 754.305 kb on + strand, within MMP_RS03980 at 754.305 kb on + strand, within MMP_RS03980 at 754.323 kb on - strand, within MMP_RS03980 at 754.323 kb on - strand, within MMP_RS03980 at 754.347 kb on + strand, within MMP_RS03980 at 754.408 kb on - strand at 754.502 kb on - strand at 754.541 kb on + strand at 754.594 kb on - strand at 754.597 kb on - strand at 754.601 kb on - strand at 754.635 kb on + strand, within MMP_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 752,169 + +0.8 752,171 - +1.0 752,172 + +0.1 752,178 + +0.1 752,236 - -1.8 752,376 - MMP_RS03960 0.55 -3.6 752,526 + -3.3 752,528 - +3.4 752,531 - -1.2 752,534 - +3.9 752,535 + +0.3 752,776 - MMP_RS03965 0.34 -0.2 752,987 - +0.3 752,987 - +1.5 752,998 + +0.5 753,012 - -1.9 753,176 - +0.4 753,177 + +0.5 753,250 + MMP_RS08885 0.21 +0.4 753,269 - MMP_RS08885 0.25 +0.4 753,275 - MMP_RS08885 0.26 +0.5 753,275 - MMP_RS08885 0.26 +1.9 753,283 + MMP_RS08885 0.28 +0.8 753,285 - MMP_RS08885 0.28 +0.2 753,349 + MMP_RS08885 0.40 +0.5 753,349 + MMP_RS08885 0.40 +1.3 753,434 - MMP_RS08885 0.56 +0.1 753,447 - MMP_RS08885 0.59 +2.5 753,450 - MMP_RS08885 0.59 -0.6 753,454 - MMP_RS08885 0.60 -1.7 753,455 + MMP_RS08885 0.60 +0.7 753,478 - MMP_RS08885 0.65 +0.1 753,546 + MMP_RS08885 0.78 +0.4 753,546 + MMP_RS08885 0.78 +1.1 753,549 - MMP_RS08885 0.78 +1.7 753,549 - MMP_RS08885 0.78 -2.2 753,549 - MMP_RS08885 0.78 -1.1 753,550 + MMP_RS08885 0.78 -0.7 753,550 + MMP_RS08885 0.78 -1.3 753,553 + MMP_RS08885 0.79 +1.8 753,569 - MMP_RS08885 0.82 -0.3 753,570 + MMP_RS08885 0.82 -1.2 753,600 - MMP_RS08885 0.88 -1.4 753,608 + MMP_RS08885 0.90 +0.5 753,624 - +0.1 753,658 - +1.2 753,661 + +0.2 753,682 + -2.4 753,709 - -0.4 753,740 + -1.1 753,747 + +0.0 753,785 - -0.5 753,809 - MMP_RS03975 0.11 -0.8 753,810 + MMP_RS03975 0.12 +0.3 753,867 + MMP_RS03975 0.30 +1.3 753,869 - MMP_RS03975 0.31 +1.8 753,870 + MMP_RS03975 0.31 +1.3 753,950 + MMP_RS03975 0.57 +1.0 753,957 + MMP_RS03975 0.59 -0.3 753,967 + MMP_RS03975 0.62 +0.8 753,997 - MMP_RS03975 0.72 +1.3 753,997 - MMP_RS03975 0.72 +1.2 753,998 + MMP_RS03975 0.72 -1.8 754,000 + MMP_RS03975 0.73 -3.6 754,015 - MMP_RS03975 0.78 +0.9 754,021 - MMP_RS03975 0.80 -1.5 754,021 - MMP_RS03975 0.80 -0.1 754,022 + MMP_RS03975 0.80 -2.1 754,022 + MMP_RS03975 0.80 -0.1 754,023 - MMP_RS03975 0.81 -2.0 754,023 - MMP_RS03975 0.81 +0.0 754,023 - MMP_RS03975 0.81 -1.3 754,023 - MMP_RS03975 0.81 +2.7 754,023 - MMP_RS03975 0.81 +0.7 754,024 + MMP_RS03975 0.81 +1.7 754,025 - MMP_RS03975 0.81 +1.2 754,026 + MMP_RS03975 0.82 -0.1 754,026 + MMP_RS03975 0.82 +0.7 754,026 + MMP_RS03975 0.82 -2.0 754,070 + -0.5 754,073 + -0.5 754,177 - MMP_RS03980 0.23 -0.8 754,228 + MMP_RS03980 0.42 +1.2 754,241 + MMP_RS03980 0.47 +1.5 754,264 + MMP_RS03980 0.55 +0.6 754,266 + MMP_RS03980 0.56 +0.6 754,284 - MMP_RS03980 0.62 +3.2 754,299 - MMP_RS03980 0.68 +0.2 754,305 + MMP_RS03980 0.70 +1.0 754,305 + MMP_RS03980 0.70 +1.8 754,323 - MMP_RS03980 0.77 -0.8 754,323 - MMP_RS03980 0.77 -0.5 754,347 + MMP_RS03980 0.85 +0.8 754,408 - -2.6 754,502 - -1.5 754,541 + +1.7 754,594 - +2.1 754,597 - -2.5 754,601 - -1.1 754,635 + MMP_RS03985 0.13 +0.9
Or see this region's nucleotide sequence