Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07850 and MMP_RS07855 overlap by 4 nucleotides MMP_RS07855 and MMP_RS07860 overlap by 4 nucleotides MMP_RS07860 and MMP_RS07865 are separated by 9 nucleotides
MMP_RS07850: MMP_RS07850 - prephenate dehydratase, at 1,487,425 to 1,488,231
_RS07850
MMP_RS07855: MMP_RS07855 - class I SAM-dependent methyltransferase, at 1,488,228 to 1,488,938
_RS07855
MMP_RS07860: MMP_RS07860 - hypothetical protein, at 1,488,935 to 1,489,225
_RS07860
MMP_RS07865: MMP_RS07865 - methanogenesis marker 2 protein, at 1,489,235 to 1,490,206
_RS07865
Position (kb)
1488
1489
1490 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1488.315 kb on - strand, within MMP_RS07855 at 1488.381 kb on - strand, within MMP_RS07855 at 1488.382 kb on + strand, within MMP_RS07855 at 1488.383 kb on - strand, within MMP_RS07855 at 1488.383 kb on - strand, within MMP_RS07855 at 1488.386 kb on + strand, within MMP_RS07855 at 1488.703 kb on - strand, within MMP_RS07855 at 1488.703 kb on - strand, within MMP_RS07855 at 1488.703 kb on - strand, within MMP_RS07855 at 1488.704 kb on + strand, within MMP_RS07855 at 1488.704 kb on + strand, within MMP_RS07855 at 1488.704 kb on + strand, within MMP_RS07855 at 1488.705 kb on - strand, within MMP_RS07855 at 1488.705 kb on - strand, within MMP_RS07855 at 1488.706 kb on + strand, within MMP_RS07855 at 1488.706 kb on + strand, within MMP_RS07855 at 1488.733 kb on - strand, within MMP_RS07855 at 1488.734 kb on + strand, within MMP_RS07855 at 1488.913 kb on + strand at 1488.953 kb on + strand at 1488.953 kb on + strand at 1489.071 kb on - strand, within MMP_RS07860 at 1489.198 kb on + strand at 1489.227 kb on - strand at 1489.228 kb on + strand at 1489.228 kb on + strand at 1489.228 kb on + strand at 1489.229 kb on - strand at 1489.299 kb on + strand at 1489.551 kb on + strand at 1489.646 kb on + strand at 1489.779 kb on + strand at 1490.084 kb on - strand at 1490.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,488,315 - MMP_RS07855 0.12 +1.6 1,488,381 - MMP_RS07855 0.22 -0.7 1,488,382 + MMP_RS07855 0.22 +0.6 1,488,383 - MMP_RS07855 0.22 -2.3 1,488,383 - MMP_RS07855 0.22 +1.2 1,488,386 + MMP_RS07855 0.22 -0.8 1,488,703 - MMP_RS07855 0.67 -0.3 1,488,703 - MMP_RS07855 0.67 +0.2 1,488,703 - MMP_RS07855 0.67 -0.8 1,488,704 + MMP_RS07855 0.67 +0.3 1,488,704 + MMP_RS07855 0.67 +0.5 1,488,704 + MMP_RS07855 0.67 -0.7 1,488,705 - MMP_RS07855 0.67 -0.4 1,488,705 - MMP_RS07855 0.67 -0.8 1,488,706 + MMP_RS07855 0.67 +2.3 1,488,706 + MMP_RS07855 0.67 +1.2 1,488,733 - MMP_RS07855 0.71 -0.6 1,488,734 + MMP_RS07855 0.71 +0.4 1,488,913 + +1.3 1,488,953 + +0.5 1,488,953 + +0.2 1,489,071 - MMP_RS07860 0.47 +3.4 1,489,198 + +2.1 1,489,227 - -3.0 1,489,228 + +1.7 1,489,228 + +0.2 1,489,228 + +0.0 1,489,229 - -1.6 1,489,299 + -2.5 1,489,551 + -2.8 1,489,646 + +1.4 1,489,779 + -1.3 1,490,084 - -1.8 1,490,126 + -2.2
Or see this region's nucleotide sequence