Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07825 and MMP_RS07830 are separated by 17 nucleotides MMP_RS07830 and MMP_RS07835 are separated by 107 nucleotides MMP_RS07835 and MMP_RS07840 are separated by 51 nucleotides MMP_RS07840 and MMP_RS07845 are separated by 42 nucleotides
MMP_RS07825: MMP_RS07825 - preprotein translocase subunit SecD, at 1,481,881 to 1,483,047
_RS07825
MMP_RS07830: MMP_RS07830 - protein translocase subunit SecF, at 1,483,065 to 1,483,910
_RS07830
MMP_RS07835: MMP_RS07835 - TldD/PmbA family protein, at 1,484,018 to 1,485,280
_RS07835
MMP_RS07840: MMP_RS07840 - ribonuclease III, at 1,485,332 to 1,486,021
_RS07840
MMP_RS07845: MMP_RS07845 - LL-diaminopimelate aminotransferase, at 1,486,064 to 1,487,314
_RS07845
Position (kb)
1484
1485
1486 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1483.093 kb on - strand at 1483.792 kb on + strand at 1483.963 kb on + strand at 1483.966 kb on - strand at 1483.982 kb on + strand at 1483.994 kb on - strand at 1484.241 kb on - strand, within MMP_RS07835 at 1484.876 kb on + strand, within MMP_RS07835 at 1484.998 kb on - strand, within MMP_RS07835 at 1485.042 kb on + strand, within MMP_RS07835 at 1485.047 kb on - strand, within MMP_RS07835 at 1485.123 kb on + strand, within MMP_RS07835 at 1485.313 kb on - strand at 1485.370 kb on + strand at 1485.385 kb on + strand at 1485.395 kb on + strand at 1485.566 kb on - strand, within MMP_RS07840 at 1485.761 kb on + strand, within MMP_RS07840 at 1486.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,483,093 - -1.2 1,483,792 + -1.2 1,483,963 + -2.6 1,483,966 - +1.2 1,483,982 + +1.7 1,483,994 - +1.0 1,484,241 - MMP_RS07835 0.18 +2.0 1,484,876 + MMP_RS07835 0.68 +1.8 1,484,998 - MMP_RS07835 0.78 +0.0 1,485,042 + MMP_RS07835 0.81 +0.9 1,485,047 - MMP_RS07835 0.81 +0.1 1,485,123 + MMP_RS07835 0.87 +1.7 1,485,313 - +1.7 1,485,370 + +1.3 1,485,385 + +1.6 1,485,395 + -0.1 1,485,566 - MMP_RS07840 0.34 +0.3 1,485,761 + MMP_RS07840 0.62 +0.3 1,486,083 + -1.2
Or see this region's nucleotide sequence