Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06905 and MMP_RS06910 are separated by 18 nucleotides MMP_RS06910 and MMP_RS06915 are separated by 102 nucleotides MMP_RS06915 and MMP_RS06920 are separated by 13 nucleotides
MMP_RS06905: MMP_RS06905 - hypothetical protein, at 1,318,845 to 1,319,039
_RS06905
MMP_RS06910: MMP_RS06910 - RlmF-related methyltransferase, at 1,319,058 to 1,319,852
_RS06910
MMP_RS06915: MMP_RS06915 - metallophosphoesterase, at 1,319,955 to 1,321,073
_RS06915
MMP_RS06920: MMP_RS06920 - AAA family ATPase, at 1,321,087 to 1,324,068
_RS06920
Position (kb)
1319
1320
1321
1322 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1318.973 kb on - strand, within MMP_RS06905 at 1318.974 kb on + strand, within MMP_RS06905 at 1319.033 kb on + strand at 1319.037 kb on - strand at 1319.351 kb on + strand, within MMP_RS06910 at 1319.451 kb on + strand, within MMP_RS06910 at 1319.451 kb on + strand, within MMP_RS06910 at 1319.468 kb on - strand, within MMP_RS06910 at 1319.471 kb on - strand, within MMP_RS06910 at 1319.711 kb on - strand, within MMP_RS06910 at 1319.717 kb on + strand, within MMP_RS06910 at 1319.736 kb on + strand, within MMP_RS06910 at 1319.770 kb on - strand, within MMP_RS06910 at 1319.771 kb on + strand, within MMP_RS06910 at 1319.886 kb on - strand at 1319.886 kb on - strand at 1319.891 kb on - strand at 1319.892 kb on + strand at 1319.895 kb on + strand at 1319.895 kb on + strand at 1319.934 kb on + strand at 1320.050 kb on - strand at 1320.296 kb on - strand, within MMP_RS06915 at 1320.296 kb on - strand, within MMP_RS06915 at 1320.342 kb on - strand, within MMP_RS06915 at 1320.342 kb on - strand, within MMP_RS06915 at 1320.646 kb on + strand, within MMP_RS06915 at 1320.678 kb on + strand, within MMP_RS06915 at 1320.808 kb on - strand, within MMP_RS06915 at 1321.005 kb on + strand at 1321.053 kb on - strand at 1321.068 kb on - strand at 1321.328 kb on + strand at 1321.374 kb on + strand at 1321.591 kb on + strand, within MMP_RS06920 at 1321.837 kb on + strand, within MMP_RS06920 at 1321.895 kb on - strand, within MMP_RS06920 at 1321.920 kb on + strand, within MMP_RS06920 at 1321.952 kb on - strand, within MMP_RS06920 at 1321.953 kb on + strand, within MMP_RS06920 at 1322.012 kb on + strand, within MMP_RS06920 at 1322.026 kb on + strand, within MMP_RS06920 at 1322.055 kb on + strand, within MMP_RS06920
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,318,973 - MMP_RS06905 0.66 +0.5 1,318,974 + MMP_RS06905 0.66 +0.5 1,319,033 + +1.0 1,319,037 - -0.5 1,319,351 + MMP_RS06910 0.37 +1.7 1,319,451 + MMP_RS06910 0.49 +0.4 1,319,451 + MMP_RS06910 0.49 +1.7 1,319,468 - MMP_RS06910 0.52 +0.1 1,319,471 - MMP_RS06910 0.52 +0.6 1,319,711 - MMP_RS06910 0.82 +1.1 1,319,717 + MMP_RS06910 0.83 -0.0 1,319,736 + MMP_RS06910 0.85 +1.7 1,319,770 - MMP_RS06910 0.90 +1.6 1,319,771 + MMP_RS06910 0.90 +0.4 1,319,886 - -0.2 1,319,886 - +2.7 1,319,891 - +1.2 1,319,892 + -0.1 1,319,895 + +0.7 1,319,895 + -0.2 1,319,934 + +1.9 1,320,050 - +1.8 1,320,296 - MMP_RS06915 0.30 -1.4 1,320,296 - MMP_RS06915 0.30 -0.4 1,320,342 - MMP_RS06915 0.35 -1.7 1,320,342 - MMP_RS06915 0.35 -0.5 1,320,646 + MMP_RS06915 0.62 -2.6 1,320,678 + MMP_RS06915 0.65 -0.7 1,320,808 - MMP_RS06915 0.76 -0.7 1,321,005 + -0.9 1,321,053 - -1.2 1,321,068 - -0.9 1,321,328 + -1.0 1,321,374 + -0.4 1,321,591 + MMP_RS06920 0.17 -0.7 1,321,837 + MMP_RS06920 0.25 -1.8 1,321,895 - MMP_RS06920 0.27 -1.2 1,321,920 + MMP_RS06920 0.28 -1.3 1,321,952 - MMP_RS06920 0.29 +2.3 1,321,953 + MMP_RS06920 0.29 +0.5 1,322,012 + MMP_RS06920 0.31 +0.2 1,322,026 + MMP_RS06920 0.31 +1.5 1,322,055 + MMP_RS06920 0.32 +0.1
Or see this region's nucleotide sequence