Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06565 and MMP_RS06570 are separated by 22 nucleotides MMP_RS06570 and MMP_RS06575 are separated by 4 nucleotides MMP_RS06575 and MMP_RS06580 are separated by 100 nucleotides MMP_RS06580 and MMP_RS06585 are separated by 71 nucleotides
MMP_RS06565: MMP_RS06565 - fumarate reductase subunit A, at 1,261,146 to 1,262,765
_RS06565
MMP_RS06570: MMP_RS06570 - DUF190 domain-containing protein, at 1,262,788 to 1,263,117
_RS06570
MMP_RS06575: MMP_RS06575 - fluoride efflux transporter CrcB, at 1,263,122 to 1,263,490
_RS06575
MMP_RS06580: MMP_RS06580 - tRNA-Arg, at 1,263,591 to 1,263,665
_RS06580
MMP_RS06585: MMP_RS06585 - DMT family protein, at 1,263,737 to 1,264,075
_RS06585
Position (kb)
1262
1263
1264 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1262.157 kb on + strand at 1262.752 kb on + strand at 1262.830 kb on - strand, within MMP_RS06570 at 1262.872 kb on - strand, within MMP_RS06570 at 1262.874 kb on - strand, within MMP_RS06570 at 1262.894 kb on - strand, within MMP_RS06570 at 1263.022 kb on - strand, within MMP_RS06570 at 1263.035 kb on + strand, within MMP_RS06570 at 1263.216 kb on - strand, within MMP_RS06575 at 1263.339 kb on - strand, within MMP_RS06575 at 1263.380 kb on - strand, within MMP_RS06575 at 1263.382 kb on - strand, within MMP_RS06575 at 1263.382 kb on - strand, within MMP_RS06575 at 1263.503 kb on - strand at 1263.542 kb on + strand at 1263.543 kb on - strand at 1263.545 kb on - strand at 1263.554 kb on + strand at 1263.739 kb on + strand at 1263.997 kb on + strand, within MMP_RS06585 at 1264.065 kb on - strand at 1264.103 kb on + strand at 1264.105 kb on + strand at 1264.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,262,157 + -1.3 1,262,752 + -1.0 1,262,830 - MMP_RS06570 0.13 +1.4 1,262,872 - MMP_RS06570 0.25 +0.4 1,262,874 - MMP_RS06570 0.26 +1.3 1,262,894 - MMP_RS06570 0.32 +1.8 1,263,022 - MMP_RS06570 0.71 +0.1 1,263,035 + MMP_RS06570 0.75 +6.8 1,263,216 - MMP_RS06575 0.25 +1.6 1,263,339 - MMP_RS06575 0.59 +0.8 1,263,380 - MMP_RS06575 0.70 +2.8 1,263,382 - MMP_RS06575 0.70 -3.3 1,263,382 - MMP_RS06575 0.70 +0.3 1,263,503 - +2.3 1,263,542 + -1.2 1,263,543 - -3.4 1,263,545 - +0.8 1,263,554 + -3.2 1,263,739 + +0.7 1,263,997 + MMP_RS06585 0.77 +0.2 1,264,065 - +0.4 1,264,103 + -0.6 1,264,105 + +0.1 1,264,106 - -0.1
Or see this region's nucleotide sequence