Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06480 and MMP_RS06485 are separated by 114 nucleotides MMP_RS06485 and MMP_RS06490 overlap by 26 nucleotides MMP_RS06490 and MMP_RS06495 are separated by 17 nucleotides MMP_RS06495 and MMP_RS06500 are separated by 15 nucleotides
MMP_RS06480: MMP_RS06480 - ABC transporter substrate-binding protein, at 1,243,648 to 1,244,796
_RS06480
MMP_RS06485: MMP_RS06485 - zinc ribbon domain-containing protein, at 1,244,911 to 1,245,483
_RS06485
MMP_RS06490: MMP_RS06490 - hypothetical protein, at 1,245,458 to 1,245,985
_RS06490
MMP_RS06495: MMP_RS06495 - YkgJ family cysteine cluster protein, at 1,246,003 to 1,246,815
_RS06495
MMP_RS06500: MMP_RS06500 - ATP-binding protein, at 1,246,831 to 1,248,324
_RS06500
Position (kb)
1245
1246 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1244.758 kb on - strand at 1244.759 kb on + strand at 1244.828 kb on - strand at 1244.828 kb on - strand at 1244.835 kb on + strand at 1244.843 kb on - strand at 1245.286 kb on - strand, within MMP_RS06485 at 1245.437 kb on + strand at 1245.440 kb on + strand at 1245.484 kb on - strand at 1245.536 kb on - strand, within MMP_RS06490 at 1245.571 kb on + strand, within MMP_RS06490 at 1245.819 kb on + strand, within MMP_RS06490 at 1245.822 kb on + strand, within MMP_RS06490 at 1245.822 kb on + strand, within MMP_RS06490 at 1245.824 kb on + strand, within MMP_RS06490 at 1245.920 kb on - strand, within MMP_RS06490 at 1245.985 kb on - strand at 1245.985 kb on - strand at 1246.057 kb on + strand at 1246.087 kb on + strand, within MMP_RS06495 at 1246.087 kb on + strand, within MMP_RS06495 at 1246.138 kb on + strand, within MMP_RS06495 at 1246.761 kb on + strand at 1246.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,244,758 - +2.9 1,244,759 + +3.2 1,244,828 - +1.7 1,244,828 - +3.1 1,244,835 + +1.8 1,244,843 - +1.4 1,245,286 - MMP_RS06485 0.65 -2.3 1,245,437 + -1.5 1,245,440 + -0.7 1,245,484 - +1.3 1,245,536 - MMP_RS06490 0.15 +0.5 1,245,571 + MMP_RS06490 0.21 +0.2 1,245,819 + MMP_RS06490 0.68 -3.5 1,245,822 + MMP_RS06490 0.69 -1.1 1,245,822 + MMP_RS06490 0.69 -1.5 1,245,824 + MMP_RS06490 0.69 -1.2 1,245,920 - MMP_RS06490 0.88 -2.7 1,245,985 - -0.1 1,245,985 - +1.6 1,246,057 + -1.6 1,246,087 + MMP_RS06495 0.10 -0.4 1,246,087 + MMP_RS06495 0.10 +0.2 1,246,138 + MMP_RS06495 0.17 -2.6 1,246,761 + +1.8 1,246,782 + +0.1
Or see this region's nucleotide sequence