Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06420 and MMP_RS06425 are separated by 33 nucleotides MMP_RS06425 and MMP_RS06430 are separated by 92 nucleotides MMP_RS06430 and MMP_RS06435 are separated by 90 nucleotides MMP_RS06435 and MMP_RS06440 are separated by 22 nucleotides
MMP_RS06420: MMP_RS06420 - formylmethanofuran dehydrogenase subunit A, at 1,231,217 to 1,232,920
_RS06420
MMP_RS06425: MMP_RS06425 - formylmethanofuran dehydrogenase subunit C, at 1,232,954 to 1,233,772
_RS06425
MMP_RS06430: MMP_RS06430 - 6-carboxytetrahydropterin synthase QueD, at 1,233,865 to 1,234,368
_RS06430
MMP_RS06435: MMP_RS06435 - CBS domain-containing protein, at 1,234,459 to 1,235,019
_RS06435
MMP_RS06440: MMP_RS06440 - CBS domain-containing protein, at 1,235,042 to 1,235,881
_RS06440
Position (kb)
1233
1234
1235 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1233.352 kb on + strand at 1233.708 kb on + strand at 1233.820 kb on - strand at 1233.826 kb on - strand at 1233.827 kb on + strand at 1233.827 kb on + strand at 1233.827 kb on + strand at 1233.828 kb on - strand at 1233.828 kb on - strand at 1233.829 kb on + strand at 1233.832 kb on - strand at 1233.832 kb on - strand at 1233.832 kb on - strand at 1233.833 kb on + strand at 1233.833 kb on + strand at 1233.834 kb on - strand at 1233.835 kb on + strand at 1233.837 kb on - strand at 1233.837 kb on - strand at 1233.847 kb on + strand at 1233.865 kb on + strand at 1233.865 kb on + strand at 1233.947 kb on - strand, within MMP_RS06430 at 1234.046 kb on - strand, within MMP_RS06430 at 1234.135 kb on - strand, within MMP_RS06430 at 1234.139 kb on - strand, within MMP_RS06430 at 1234.140 kb on + strand, within MMP_RS06430 at 1234.236 kb on + strand, within MMP_RS06430 at 1234.244 kb on + strand, within MMP_RS06430 at 1234.256 kb on + strand, within MMP_RS06430 at 1234.320 kb on + strand at 1234.367 kb on + strand at 1234.405 kb on - strand at 1234.405 kb on - strand at 1234.413 kb on + strand at 1234.740 kb on - strand, within MMP_RS06435 at 1234.741 kb on + strand, within MMP_RS06435 at 1234.763 kb on - strand, within MMP_RS06435 at 1234.796 kb on - strand, within MMP_RS06435 at 1234.809 kb on - strand, within MMP_RS06435 at 1234.814 kb on - strand, within MMP_RS06435 at 1234.825 kb on + strand, within MMP_RS06435 at 1234.879 kb on + strand, within MMP_RS06435 at 1235.086 kb on + strand at 1235.092 kb on - strand at 1235.149 kb on + strand, within MMP_RS06440 at 1235.322 kb on - strand, within MMP_RS06440 at 1235.326 kb on + strand, within MMP_RS06440
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,233,352 + -1.1 1,233,708 + -2.4 1,233,820 - +1.6 1,233,826 - +3.2 1,233,827 + +1.3 1,233,827 + +1.1 1,233,827 + +1.0 1,233,828 - +0.3 1,233,828 - +1.8 1,233,829 + +2.2 1,233,832 - -0.2 1,233,832 - +2.0 1,233,832 - -0.5 1,233,833 + -1.0 1,233,833 + +0.8 1,233,834 - +1.2 1,233,835 + -0.4 1,233,837 - +0.1 1,233,837 - -1.2 1,233,847 + +3.8 1,233,865 + -0.8 1,233,865 + +0.4 1,233,947 - MMP_RS06430 0.16 -1.1 1,234,046 - MMP_RS06430 0.36 -1.7 1,234,135 - MMP_RS06430 0.54 -0.2 1,234,139 - MMP_RS06430 0.54 -1.6 1,234,140 + MMP_RS06430 0.55 -0.2 1,234,236 + MMP_RS06430 0.74 -0.3 1,234,244 + MMP_RS06430 0.75 -1.2 1,234,256 + MMP_RS06430 0.78 -1.1 1,234,320 + -0.1 1,234,367 + -0.2 1,234,405 - -1.8 1,234,405 - +0.9 1,234,413 + +0.2 1,234,740 - MMP_RS06435 0.50 -0.1 1,234,741 + MMP_RS06435 0.50 +0.5 1,234,763 - MMP_RS06435 0.54 -0.9 1,234,796 - MMP_RS06435 0.60 -0.8 1,234,809 - MMP_RS06435 0.62 -0.2 1,234,814 - MMP_RS06435 0.63 -2.2 1,234,825 + MMP_RS06435 0.65 -0.5 1,234,879 + MMP_RS06435 0.75 +3.6 1,235,086 + -1.9 1,235,092 - +4.2 1,235,149 + MMP_RS06440 0.13 -3.3 1,235,322 - MMP_RS06440 0.33 -0.7 1,235,326 + MMP_RS06440 0.34 -0.0
Or see this region's nucleotide sequence