Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05710 and MMP_RS05715 are separated by 12 nucleotides MMP_RS05715 and MMP_RS05720 are separated by 0 nucleotides MMP_RS05720 and MMP_RS05725 are separated by 13 nucleotides MMP_RS05725 and MMP_RS05730 are separated by 11 nucleotides
MMP_RS05710: MMP_RS05710 - ADP-forming succinate--CoA ligase subunit beta, at 1,096,371 to 1,097,459
_RS05710
MMP_RS05715: MMP_RS05715 - hypothetical protein, at 1,097,472 to 1,097,783
_RS05715
MMP_RS05720: MMP_RS05720 - signal recognition particle subunit SRP19/SEC65 family protein, at 1,097,784 to 1,098,053
_RS05720
MMP_RS05725: MMP_RS05725 - magnesium/cobalt transporter CorA, at 1,098,067 to 1,099,017
_RS05725
MMP_RS05730: MMP_RS05730 - DUF373 family protein, at 1,099,029 to 1,100,138
_RS05730
Position (kb)
1097
1098
1099 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1096.801 kb on + strand at 1096.995 kb on - strand at 1097.330 kb on - strand at 1097.453 kb on - strand at 1097.529 kb on + strand, within MMP_RS05715 at 1097.541 kb on - strand, within MMP_RS05715 at 1097.542 kb on + strand, within MMP_RS05715 at 1097.544 kb on + strand, within MMP_RS05715 at 1097.562 kb on - strand, within MMP_RS05715 at 1097.562 kb on - strand, within MMP_RS05715 at 1097.563 kb on + strand, within MMP_RS05715 at 1097.563 kb on + strand, within MMP_RS05715 at 1097.584 kb on + strand, within MMP_RS05715 at 1097.603 kb on + strand, within MMP_RS05715 at 1097.653 kb on + strand, within MMP_RS05715 at 1097.799 kb on + strand at 1097.799 kb on + strand at 1097.802 kb on - strand at 1097.802 kb on - strand at 1097.802 kb on - strand at 1097.802 kb on - strand at 1097.855 kb on - strand, within MMP_RS05720 at 1097.910 kb on + strand, within MMP_RS05720 at 1097.912 kb on + strand, within MMP_RS05720 at 1098.024 kb on + strand, within MMP_RS05720 at 1098.106 kb on - strand at 1098.176 kb on - strand at 1098.195 kb on + strand at 1098.343 kb on - strand at 1098.441 kb on - strand at 1098.450 kb on - strand at 1098.490 kb on - strand at 1098.534 kb on - strand at 1098.589 kb on - strand at 1098.594 kb on - strand at 1098.616 kb on - strand at 1098.803 kb on - strand at 1098.806 kb on - strand at 1098.811 kb on + strand at 1098.939 kb on - strand at 1098.955 kb on + strand at 1098.958 kb on - strand at 1098.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,096,801 + -2.6 1,096,995 - +0.1 1,097,330 - -2.4 1,097,453 - -0.4 1,097,529 + MMP_RS05715 0.18 -1.2 1,097,541 - MMP_RS05715 0.22 -0.9 1,097,542 + MMP_RS05715 0.22 -2.2 1,097,544 + MMP_RS05715 0.23 +0.2 1,097,562 - MMP_RS05715 0.29 +0.9 1,097,562 - MMP_RS05715 0.29 +0.5 1,097,563 + MMP_RS05715 0.29 -0.3 1,097,563 + MMP_RS05715 0.29 +3.5 1,097,584 + MMP_RS05715 0.36 -1.0 1,097,603 + MMP_RS05715 0.42 +0.7 1,097,653 + MMP_RS05715 0.58 +0.3 1,097,799 + +0.1 1,097,799 + +1.1 1,097,802 - -0.4 1,097,802 - +0.7 1,097,802 - -0.0 1,097,802 - +0.2 1,097,855 - MMP_RS05720 0.26 +1.0 1,097,910 + MMP_RS05720 0.47 +2.0 1,097,912 + MMP_RS05720 0.47 +0.8 1,098,024 + MMP_RS05720 0.89 +0.6 1,098,106 - -2.1 1,098,176 - -2.1 1,098,195 + -0.1 1,098,343 - -3.1 1,098,441 - -1.9 1,098,450 - -0.7 1,098,490 - -2.3 1,098,534 - -0.9 1,098,589 - +0.2 1,098,594 - -2.4 1,098,616 - -3.1 1,098,803 - -2.1 1,098,806 - -2.1 1,098,811 + -2.4 1,098,939 - -1.3 1,098,955 + -2.1 1,098,958 - -1.3 1,098,959 + +0.1
Or see this region's nucleotide sequence