Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05690 and MMP_RS05695 are separated by 156 nucleotides MMP_RS05695 and MMP_RS05700 overlap by 4 nucleotides MMP_RS05700 and MMP_RS05705 are separated by 49 nucleotides MMP_RS05705 and MMP_RS05710 are separated by 57 nucleotides
MMP_RS05690: MMP_RS05690 - acetylornithine transaminase, at 1,093,257 to 1,094,444
_RS05690
MMP_RS05695: MMP_RS05695 - phospholipase D-like domain-containing protein, at 1,094,601 to 1,095,176
_RS05695
MMP_RS05700: MMP_RS05700 - TfuA-related McrA-glycine thioamidation protein, at 1,095,173 to 1,095,817
_RS05700
MMP_RS05705: MMP_RS05705 - aspartate carbamoyltransferase regulatory subunit, at 1,095,867 to 1,096,313
_RS05705
MMP_RS05710: MMP_RS05710 - ADP-forming succinate--CoA ligase subunit beta, at 1,096,371 to 1,097,459
_RS05710
Position (kb)
1095
1096 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1094.359 kb on + strand at 1094.384 kb on + strand at 1094.433 kb on - strand at 1094.507 kb on - strand at 1094.510 kb on - strand at 1094.510 kb on - strand at 1094.528 kb on - strand at 1094.531 kb on + strand at 1094.643 kb on + strand at 1094.673 kb on - strand, within MMP_RS05695 at 1094.678 kb on + strand, within MMP_RS05695 at 1094.779 kb on + strand, within MMP_RS05695 at 1094.828 kb on - strand, within MMP_RS05695 at 1094.842 kb on - strand, within MMP_RS05695 at 1094.844 kb on - strand, within MMP_RS05695 at 1094.844 kb on - strand, within MMP_RS05695 at 1094.870 kb on + strand, within MMP_RS05695 at 1095.017 kb on - strand, within MMP_RS05695 at 1095.022 kb on - strand, within MMP_RS05695 at 1095.028 kb on - strand, within MMP_RS05695 at 1095.029 kb on + strand, within MMP_RS05695 at 1095.252 kb on - strand, within MMP_RS05700 at 1095.253 kb on + strand, within MMP_RS05700 at 1095.253 kb on + strand, within MMP_RS05700 at 1095.279 kb on - strand, within MMP_RS05700 at 1095.302 kb on - strand, within MMP_RS05700 at 1095.309 kb on - strand, within MMP_RS05700 at 1095.309 kb on - strand, within MMP_RS05700 at 1095.318 kb on - strand, within MMP_RS05700 at 1095.385 kb on - strand, within MMP_RS05700 at 1095.396 kb on - strand, within MMP_RS05700 at 1095.475 kb on - strand, within MMP_RS05700 at 1095.476 kb on + strand, within MMP_RS05700 at 1095.485 kb on + strand, within MMP_RS05700 at 1095.524 kb on + strand, within MMP_RS05700 at 1095.667 kb on - strand, within MMP_RS05700 at 1095.668 kb on + strand, within MMP_RS05700 at 1095.801 kb on + strand at 1095.846 kb on - strand at 1095.846 kb on - strand at 1096.070 kb on + strand at 1096.115 kb on + strand at 1096.115 kb on + strand at 1096.301 kb on + strand at 1096.483 kb on - strand at 1096.653 kb on - strand at 1096.736 kb on + strand at 1096.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 1,094,359 + -1.9 1,094,384 + -2.5 1,094,433 - -2.2 1,094,507 - -0.8 1,094,510 - -1.6 1,094,510 - -1.9 1,094,528 - +2.3 1,094,531 + +0.6 1,094,643 + +0.0 1,094,673 - MMP_RS05695 0.12 +1.6 1,094,678 + MMP_RS05695 0.13 -2.3 1,094,779 + MMP_RS05695 0.31 +1.2 1,094,828 - MMP_RS05695 0.39 -0.2 1,094,842 - MMP_RS05695 0.42 +0.4 1,094,844 - MMP_RS05695 0.42 +3.2 1,094,844 - MMP_RS05695 0.42 +0.4 1,094,870 + MMP_RS05695 0.47 -1.1 1,095,017 - MMP_RS05695 0.72 -1.9 1,095,022 - MMP_RS05695 0.73 -2.7 1,095,028 - MMP_RS05695 0.74 +0.3 1,095,029 + MMP_RS05695 0.74 +0.8 1,095,252 - MMP_RS05700 0.12 -1.4 1,095,253 + MMP_RS05700 0.12 -1.4 1,095,253 + MMP_RS05700 0.12 -0.9 1,095,279 - MMP_RS05700 0.16 +2.4 1,095,302 - MMP_RS05700 0.20 -0.9 1,095,309 - MMP_RS05700 0.21 -2.2 1,095,309 - MMP_RS05700 0.21 -0.6 1,095,318 - MMP_RS05700 0.22 +0.5 1,095,385 - MMP_RS05700 0.33 -1.0 1,095,396 - MMP_RS05700 0.35 -0.7 1,095,475 - MMP_RS05700 0.47 +0.1 1,095,476 + MMP_RS05700 0.47 -0.8 1,095,485 + MMP_RS05700 0.48 -0.4 1,095,524 + MMP_RS05700 0.54 -4.7 1,095,667 - MMP_RS05700 0.77 -0.5 1,095,668 + MMP_RS05700 0.77 -1.8 1,095,801 + +1.4 1,095,846 - -1.6 1,095,846 - +0.1 1,096,070 + -2.9 1,096,115 + -2.3 1,096,115 + -1.6 1,096,301 + +0.3 1,096,483 - -0.9 1,096,653 - -3.3 1,096,736 + -1.6 1,096,801 + -2.6
Or see this region's nucleotide sequence