Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05060 and MMP_RS05065 are separated by 4 nucleotides MMP_RS05065 and MMP_RS05070 are separated by 104 nucleotides MMP_RS05070 and MMP_RS05075 are separated by 4 nucleotides
MMP_RS05060: MMP_RS05060 - AAA family ATPase, at 963,269 to 964,051
_RS05060
MMP_RS05065: MMP_RS05065 - CooT family nickel-binding protein, at 964,056 to 964,235
_RS05065
MMP_RS05070: MMP_RS05070 - 4Fe-4S dicluster domain-containing protein, at 964,340 to 964,804
_RS05070
MMP_RS05075: MMP_RS05075 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 964,809 to 966,182
_RS05075
Position (kb) 964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 963.366 kb on - strand, within MMP_RS05060 at 963.366 kb on - strand, within MMP_RS05060 at 963.367 kb on + strand, within MMP_RS05060 at 963.408 kb on - strand, within MMP_RS05060 at 963.409 kb on + strand, within MMP_RS05060 at 963.448 kb on + strand, within MMP_RS05060 at 963.548 kb on - strand, within MMP_RS05060 at 963.637 kb on + strand, within MMP_RS05060 at 963.745 kb on + strand, within MMP_RS05060 at 963.778 kb on - strand, within MMP_RS05060 at 963.847 kb on + strand, within MMP_RS05060 at 963.916 kb on + strand, within MMP_RS05060 at 963.919 kb on + strand, within MMP_RS05060 at 963.945 kb on - strand, within MMP_RS05060 at 963.946 kb on + strand, within MMP_RS05060 at 964.013 kb on + strand at 964.060 kb on + strand at 964.075 kb on + strand, within MMP_RS05065 at 964.075 kb on + strand, within MMP_RS05065 at 964.075 kb on + strand, within MMP_RS05065 at 964.138 kb on + strand, within MMP_RS05065 at 964.197 kb on - strand, within MMP_RS05065 at 964.235 kb on - strand at 964.267 kb on - strand at 964.288 kb on + strand at 964.301 kb on + strand at 964.304 kb on + strand at 964.354 kb on + strand at 964.402 kb on - strand, within MMP_RS05070 at 964.421 kb on - strand, within MMP_RS05070 at 964.533 kb on + strand, within MMP_RS05070 at 964.533 kb on + strand, within MMP_RS05070 at 964.537 kb on - strand, within MMP_RS05070 at 964.537 kb on - strand, within MMP_RS05070 at 964.581 kb on + strand, within MMP_RS05070 at 964.581 kb on + strand, within MMP_RS05070 at 964.582 kb on - strand, within MMP_RS05070 at 964.601 kb on - strand, within MMP_RS05070 at 964.751 kb on + strand, within MMP_RS05070 at 964.787 kb on - strand at 964.816 kb on + strand at 964.824 kb on - strand at 964.825 kb on + strand at 964.866 kb on + strand at 964.891 kb on + strand at 964.947 kb on - strand, within MMP_RS05075 at 965.209 kb on - strand, within MMP_RS05075 at 965.252 kb on - strand, within MMP_RS05075 at 965.256 kb on - strand, within MMP_RS05075 at 965.265 kb on - strand, within MMP_RS05075 at 965.439 kb on + strand, within MMP_RS05075 at 965.477 kb on + strand, within MMP_RS05075 at 965.496 kb on - strand, within MMP_RS05075 at 965.496 kb on - strand, within MMP_RS05075 at 965.497 kb on + strand, within MMP_RS05075 at 965.497 kb on + strand, within MMP_RS05075 at 965.598 kb on - strand, within MMP_RS05075 at 965.621 kb on - strand, within MMP_RS05075 at 965.639 kb on + strand, within MMP_RS05075 at 965.790 kb on - strand, within MMP_RS05075 at 965.791 kb on + strand, within MMP_RS05075
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 963,366 - MMP_RS05060 0.12 -1.6 963,366 - MMP_RS05060 0.12 -2.4 963,367 + MMP_RS05060 0.13 -0.4 963,408 - MMP_RS05060 0.18 -3.4 963,409 + MMP_RS05060 0.18 -0.6 963,448 + MMP_RS05060 0.23 -0.2 963,548 - MMP_RS05060 0.36 -0.1 963,637 + MMP_RS05060 0.47 +0.2 963,745 + MMP_RS05060 0.61 +0.0 963,778 - MMP_RS05060 0.65 -0.4 963,847 + MMP_RS05060 0.74 +0.2 963,916 + MMP_RS05060 0.83 -1.4 963,919 + MMP_RS05060 0.83 +0.2 963,945 - MMP_RS05060 0.86 -0.6 963,946 + MMP_RS05060 0.86 -1.2 964,013 + -1.1 964,060 + -0.4 964,075 + MMP_RS05065 0.11 +3.4 964,075 + MMP_RS05065 0.11 +0.9 964,075 + MMP_RS05065 0.11 +1.8 964,138 + MMP_RS05065 0.46 +0.4 964,197 - MMP_RS05065 0.78 +0.5 964,235 - +1.8 964,267 - -1.2 964,288 + -2.3 964,301 + +0.7 964,304 + +0.9 964,354 + +0.7 964,402 - MMP_RS05070 0.13 +0.2 964,421 - MMP_RS05070 0.17 +1.3 964,533 + MMP_RS05070 0.42 -1.4 964,533 + MMP_RS05070 0.42 -1.6 964,537 - MMP_RS05070 0.42 -2.6 964,537 - MMP_RS05070 0.42 -2.2 964,581 + MMP_RS05070 0.52 -1.4 964,581 + MMP_RS05070 0.52 -1.3 964,582 - MMP_RS05070 0.52 -0.5 964,601 - MMP_RS05070 0.56 -0.9 964,751 + MMP_RS05070 0.88 -0.8 964,787 - -0.4 964,816 + -0.0 964,824 - -0.3 964,825 + +0.8 964,866 + +0.3 964,891 + -1.1 964,947 - MMP_RS05075 0.10 -1.0 965,209 - MMP_RS05075 0.29 -1.2 965,252 - MMP_RS05075 0.32 -2.0 965,256 - MMP_RS05075 0.33 -2.0 965,265 - MMP_RS05075 0.33 +0.3 965,439 + MMP_RS05075 0.46 -0.8 965,477 + MMP_RS05075 0.49 -0.7 965,496 - MMP_RS05075 0.50 -1.3 965,496 - MMP_RS05075 0.50 -1.1 965,497 + MMP_RS05075 0.50 -1.6 965,497 + MMP_RS05075 0.50 +2.0 965,598 - MMP_RS05075 0.57 +0.7 965,621 - MMP_RS05075 0.59 -0.3 965,639 + MMP_RS05075 0.60 -0.7 965,790 - MMP_RS05075 0.71 -0.8 965,791 + MMP_RS05075 0.71 +0.5
Or see this region's nucleotide sequence