Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04975 and MMP_RS04980 are separated by 340 nucleotides MMP_RS04980 and MMP_RS04985 are separated by 35 nucleotides MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides
MMP_RS04975: MMP_RS04975 - hypothetical protein, at 948,263 to 949,270
_RS04975
MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110
_RS04980
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 948.752 kb on - strand, within MMP_RS04975 at 948.791 kb on - strand, within MMP_RS04975 at 948.791 kb on - strand, within MMP_RS04975 at 948.792 kb on + strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.804 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.826 kb on - strand, within MMP_RS04975 at 948.831 kb on - strand, within MMP_RS04975 at 948.831 kb on - strand, within MMP_RS04975 at 948.832 kb on + strand, within MMP_RS04975 at 948.840 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.928 kb on + strand, within MMP_RS04975 at 948.938 kb on - strand, within MMP_RS04975 at 948.939 kb on + strand, within MMP_RS04975 at 948.943 kb on - strand, within MMP_RS04975 at 948.987 kb on - strand, within MMP_RS04975 at 949.010 kb on - strand, within MMP_RS04975 at 949.022 kb on - strand, within MMP_RS04975 at 949.039 kb on - strand, within MMP_RS04975 at 949.040 kb on + strand, within MMP_RS04975 at 949.040 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.093 kb on - strand, within MMP_RS04975 at 949.097 kb on + strand, within MMP_RS04975 at 949.188 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.226 kb on + strand at 949.231 kb on - strand at 949.232 kb on + strand at 949.239 kb on + strand at 949.313 kb on - strand at 949.313 kb on - strand at 949.314 kb on + strand at 949.335 kb on - strand at 949.336 kb on + strand at 949.382 kb on + strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.386 kb on - strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.390 kb on - strand at 949.420 kb on - strand at 949.431 kb on - strand at 949.445 kb on - strand at 949.460 kb on - strand at 949.491 kb on - strand at 949.491 kb on - strand at 949.493 kb on - strand at 949.493 kb on - strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.497 kb on + strand at 949.498 kb on - strand at 949.498 kb on - strand at 949.498 kb on - strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.518 kb on + strand at 949.526 kb on - strand at 949.526 kb on - strand at 949.527 kb on + strand at 949.545 kb on - strand at 949.546 kb on + strand at 949.622 kb on + strand at 949.679 kb on - strand at 949.718 kb on - strand at 949.729 kb on - strand at 949.843 kb on - strand, within MMP_RS04980 at 949.889 kb on - strand, within MMP_RS04980 at 949.890 kb on + strand, within MMP_RS04980 at 949.891 kb on - strand, within MMP_RS04980 at 949.891 kb on - strand, within MMP_RS04980 at 949.901 kb on + strand, within MMP_RS04980 at 950.060 kb on - strand, within MMP_RS04980 at 950.061 kb on + strand, within MMP_RS04980 at 950.092 kb on - strand, within MMP_RS04980 at 950.158 kb on + strand, within MMP_RS04980 at 950.239 kb on - strand, within MMP_RS04980 at 950.315 kb on - strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.359 kb on - strand, within MMP_RS04980 at 950.360 kb on + strand, within MMP_RS04980 at 950.401 kb on - strand, within MMP_RS04980 at 950.406 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.522 kb on - strand, within MMP_RS04980 at 950.523 kb on + strand, within MMP_RS04980 at 950.566 kb on - strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.648 kb on + strand, within MMP_RS04980 at 950.677 kb on + strand, within MMP_RS04980 at 950.681 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.747 kb on - strand, within MMP_RS04980 at 950.761 kb on - strand, within MMP_RS04980 at 950.865 kb on + strand, within MMP_RS04980 at 950.884 kb on + strand, within MMP_RS04980 at 951.085 kb on + strand at 951.107 kb on + strand at 951.108 kb on - strand at 951.113 kb on - strand at 951.114 kb on + strand at 951.120 kb on + strand at 951.156 kb on + strand at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 948,752 - MMP_RS04975 0.49 -2.3 948,791 - MMP_RS04975 0.52 +2.2 948,791 - MMP_RS04975 0.52 -0.2 948,792 + MMP_RS04975 0.52 +0.9 948,798 - MMP_RS04975 0.53 -2.2 948,798 - MMP_RS04975 0.53 +0.3 948,798 - MMP_RS04975 0.53 -1.5 948,799 + MMP_RS04975 0.53 -0.8 948,799 + MMP_RS04975 0.53 +0.6 948,799 + MMP_RS04975 0.53 -1.6 948,803 - MMP_RS04975 0.54 +1.2 948,803 - MMP_RS04975 0.54 -1.4 948,803 - MMP_RS04975 0.54 +0.7 948,803 - MMP_RS04975 0.54 -1.0 948,804 + MMP_RS04975 0.54 -2.0 948,806 + MMP_RS04975 0.54 -0.5 948,806 + MMP_RS04975 0.54 +0.9 948,806 + MMP_RS04975 0.54 -1.0 948,826 - MMP_RS04975 0.56 +0.7 948,831 - MMP_RS04975 0.56 +0.9 948,831 - MMP_RS04975 0.56 -1.1 948,832 + MMP_RS04975 0.56 +2.0 948,840 + MMP_RS04975 0.57 -1.4 948,904 + MMP_RS04975 0.64 +1.0 948,904 + MMP_RS04975 0.64 -0.0 948,904 + MMP_RS04975 0.64 -0.3 948,928 + MMP_RS04975 0.66 +0.6 948,938 - MMP_RS04975 0.67 +0.5 948,939 + MMP_RS04975 0.67 +0.1 948,943 - MMP_RS04975 0.67 -0.1 948,987 - MMP_RS04975 0.72 -0.5 949,010 - MMP_RS04975 0.74 +1.4 949,022 - MMP_RS04975 0.75 +0.6 949,039 - MMP_RS04975 0.77 +0.4 949,040 + MMP_RS04975 0.77 -0.1 949,040 + MMP_RS04975 0.77 +0.9 949,048 + MMP_RS04975 0.78 +0.3 949,048 + MMP_RS04975 0.78 -2.8 949,048 + MMP_RS04975 0.78 -1.5 949,093 - MMP_RS04975 0.82 -2.3 949,097 + MMP_RS04975 0.83 -0.6 949,188 - -0.6 949,225 - +0.8 949,225 - +0.2 949,225 - +0.0 949,225 - -0.0 949,225 - -1.0 949,225 - -0.1 949,226 + +0.1 949,231 - -0.5 949,232 + +1.2 949,239 + +0.2 949,313 - +1.7 949,313 - +0.3 949,314 + -0.5 949,335 - -1.9 949,336 + -0.1 949,382 + +0.9 949,384 - +2.2 949,384 - +1.6 949,384 - -0.7 949,384 - -0.9 949,384 - -1.5 949,385 + +0.4 949,385 + -0.4 949,385 + -0.1 949,385 + -1.2 949,386 - -1.9 949,387 + +0.1 949,387 + -0.1 949,387 + +1.7 949,387 + +1.3 949,387 + +0.4 949,387 + -0.1 949,390 - -0.8 949,420 - -0.1 949,431 - -1.0 949,445 - +1.7 949,460 - -0.1 949,491 - -1.1 949,491 - -0.7 949,493 - -2.1 949,493 - -0.7 949,494 + +0.4 949,494 + -1.5 949,494 + -0.0 949,494 + -1.0 949,494 + -0.2 949,497 + +0.3 949,498 - +0.4 949,498 - -0.7 949,498 - -1.9 949,499 + +3.6 949,499 + -0.5 949,499 + -1.2 949,499 + -1.7 949,501 - -1.1 949,501 - +0.4 949,501 - -1.2 949,501 - -0.5 949,501 - -1.3 949,501 - -0.5 949,501 - -0.7 949,501 - -2.1 949,501 - -3.3 949,502 + -0.6 949,502 + +0.1 949,502 + -0.9 949,502 + -1.6 949,502 + +3.9 949,502 + -0.0 949,502 + -0.1 949,518 + -1.1 949,526 - +0.7 949,526 - +0.1 949,527 + +0.6 949,545 - +0.8 949,546 + -1.5 949,622 + -1.2 949,679 - -1.9 949,718 - -0.2 949,729 - -1.6 949,843 - MMP_RS04980 0.15 -2.9 949,889 - MMP_RS04980 0.19 -2.1 949,890 + MMP_RS04980 0.19 +0.2 949,891 - MMP_RS04980 0.19 -2.6 949,891 - MMP_RS04980 0.19 -0.3 949,901 + MMP_RS04980 0.19 +0.5 950,060 - MMP_RS04980 0.30 -0.5 950,061 + MMP_RS04980 0.30 -1.2 950,092 - MMP_RS04980 0.32 -1.9 950,158 + MMP_RS04980 0.36 +1.3 950,239 - MMP_RS04980 0.42 +0.2 950,315 - MMP_RS04980 0.47 -1.6 950,323 + MMP_RS04980 0.47 -1.7 950,323 + MMP_RS04980 0.47 -2.3 950,359 - MMP_RS04980 0.50 -0.9 950,360 + MMP_RS04980 0.50 -3.6 950,401 - MMP_RS04980 0.53 +1.1 950,406 + MMP_RS04980 0.53 -2.2 950,416 + MMP_RS04980 0.54 -1.7 950,416 + MMP_RS04980 0.54 -1.2 950,416 + MMP_RS04980 0.54 +1.5 950,416 + MMP_RS04980 0.54 -1.7 950,522 - MMP_RS04980 0.61 -2.8 950,523 + MMP_RS04980 0.61 +0.1 950,566 - MMP_RS04980 0.64 -1.4 950,567 + MMP_RS04980 0.64 -1.5 950,567 + MMP_RS04980 0.64 -2.0 950,609 - MMP_RS04980 0.67 -1.1 950,609 - MMP_RS04980 0.67 +0.8 950,648 + MMP_RS04980 0.69 +0.4 950,677 + MMP_RS04980 0.71 -0.9 950,681 + MMP_RS04980 0.71 -1.7 950,746 + MMP_RS04980 0.76 -1.7 950,746 + MMP_RS04980 0.76 +0.2 950,747 - MMP_RS04980 0.76 -2.7 950,761 - MMP_RS04980 0.77 -0.2 950,865 + MMP_RS04980 0.84 -1.7 950,884 + MMP_RS04980 0.85 -1.2 951,085 + -2.0 951,107 + -0.4 951,108 - -2.8 951,113 - -0.5 951,114 + -2.2 951,120 + +0.3 951,156 + -2.4 951,238 + MMP_RS04985 0.43 -1.9 951,238 + MMP_RS04985 0.43 -0.3 951,240 - MMP_RS04985 0.44 -1.2 951,241 + MMP_RS04985 0.44 -2.8 951,241 + MMP_RS04985 0.44 -0.6 951,335 + MMP_RS04985 0.88 -0.6 951,565 + MMP_RS04990 0.29 -1.2 951,565 + MMP_RS04990 0.29 -0.4 951,636 - MMP_RS04990 0.39 -2.5 951,644 - MMP_RS04990 0.40 -1.3 951,647 + MMP_RS04990 0.40 +0.1 951,648 - MMP_RS04990 0.40 -0.7 951,649 + MMP_RS04990 0.40 -0.1 951,649 + MMP_RS04990 0.40 -3.4 951,762 + MMP_RS04990 0.56 -0.6 951,973 + MMP_RS04990 0.85 -1.0 951,995 + MMP_RS04990 0.88 -1.4 951,998 + MMP_RS04990 0.89 -2.4 952,007 - -1.4 952,009 - -0.1 952,009 - -1.5 952,009 - -1.4 952,009 - -0.9 952,010 + -1.5 952,010 + +0.4 952,010 + -1.4 952,011 - +0.8 952,011 - -1.0 952,012 + -2.4 952,012 + -2.0 952,012 + -2.0 952,012 + -1.5 952,037 - -0.5 952,037 - -3.2 952,037 - -0.4 952,037 - -1.4 952,038 + -0.7 952,038 + -1.7 952,054 - -1.0 952,054 - -3.4 952,054 - -1.0 952,075 - +1.3 952,075 - -2.8
Or see this region's nucleotide sequence