Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04660 and MMP_RS04665 are separated by 92 nucleotides MMP_RS04665 and MMP_RS04670 are separated by 301 nucleotides MMP_RS04670 and MMP_RS04675 are separated by 9 nucleotides
MMP_RS04660: MMP_RS04660 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 890,226 to 891,452
_RS04660
MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625
_RS04665
MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586
_RS04670
MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249
_RS04675
Position (kb) 891
892
893
894
895 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 890.594 kb on - strand at 890.595 kb on + strand at 890.716 kb on - strand at 890.906 kb on - strand at 891.420 kb on - strand at 891.431 kb on + strand at 891.442 kb on + strand at 891.473 kb on - strand at 891.479 kb on - strand at 891.543 kb on - strand at 891.544 kb on + strand at 891.626 kb on - strand at 891.666 kb on - strand at 891.666 kb on - strand at 891.667 kb on + strand at 891.667 kb on + strand at 891.669 kb on + strand at 891.669 kb on + strand at 891.692 kb on + strand at 891.692 kb on + strand at 891.701 kb on + strand at 891.805 kb on - strand at 891.808 kb on + strand at 891.827 kb on - strand at 891.828 kb on + strand at 891.828 kb on + strand at 891.828 kb on + strand at 891.832 kb on - strand at 891.862 kb on - strand, within MMP_RS04665 at 891.863 kb on + strand, within MMP_RS04665 at 891.863 kb on + strand, within MMP_RS04665 at 891.917 kb on - strand, within MMP_RS04665 at 891.918 kb on + strand, within MMP_RS04665 at 891.922 kb on - strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.962 kb on + strand, within MMP_RS04665 at 891.988 kb on + strand, within MMP_RS04665 at 892.003 kb on - strand, within MMP_RS04665 at 892.031 kb on + strand, within MMP_RS04665 at 892.038 kb on + strand, within MMP_RS04665 at 892.039 kb on - strand, within MMP_RS04665 at 892.040 kb on + strand, within MMP_RS04665 at 892.043 kb on - strand, within MMP_RS04665 at 892.074 kb on + strand, within MMP_RS04665 at 892.094 kb on - strand, within MMP_RS04665 at 892.094 kb on - strand, within MMP_RS04665 at 892.137 kb on - strand, within MMP_RS04665 at 892.138 kb on + strand, within MMP_RS04665 at 892.138 kb on + strand, within MMP_RS04665 at 892.192 kb on - strand, within MMP_RS04665 at 892.252 kb on - strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.262 kb on + strand, within MMP_RS04665 at 892.282 kb on - strand, within MMP_RS04665 at 892.282 kb on - strand, within MMP_RS04665 at 892.288 kb on - strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.289 kb on + strand, within MMP_RS04665 at 892.292 kb on - strand, within MMP_RS04665 at 892.364 kb on - strand, within MMP_RS04665 at 892.525 kb on + strand, within MMP_RS04665 at 892.550 kb on + strand, within MMP_RS04665 at 892.566 kb on + strand, within MMP_RS04665 at 892.628 kb on - strand, within MMP_RS04665 at 892.629 kb on + strand, within MMP_RS04665 at 892.808 kb on + strand, within MMP_RS04665 at 892.844 kb on - strand, within MMP_RS04665 at 892.944 kb on - strand, within MMP_RS04665 at 893.122 kb on - strand, within MMP_RS04665 at 893.148 kb on + strand, within MMP_RS04665 at 893.175 kb on + strand, within MMP_RS04665 at 893.175 kb on + strand, within MMP_RS04665 at 893.208 kb on - strand, within MMP_RS04665 at 893.208 kb on - strand, within MMP_RS04665 at 893.459 kb on + strand, within MMP_RS04665 at 893.502 kb on - strand, within MMP_RS04665 at 893.502 kb on - strand, within MMP_RS04665 at 893.503 kb on + strand, within MMP_RS04665 at 893.506 kb on - strand, within MMP_RS04665 at 893.506 kb on - strand, within MMP_RS04665 at 893.507 kb on + strand, within MMP_RS04665 at 893.509 kb on - strand, within MMP_RS04665 at 893.521 kb on - strand, within MMP_RS04665 at 893.539 kb on + strand, within MMP_RS04665 at 893.579 kb on - strand, within MMP_RS04665 at 893.579 kb on - strand, within MMP_RS04665 at 893.583 kb on - strand, within MMP_RS04665 at 893.584 kb on + strand, within MMP_RS04665 at 893.584 kb on + strand, within MMP_RS04665 at 893.584 kb on + strand, within MMP_RS04665 at 893.595 kb on - strand, within MMP_RS04665 at 893.596 kb on + strand, within MMP_RS04665 at 893.611 kb on - strand, within MMP_RS04665 at 893.618 kb on - strand, within MMP_RS04665 at 893.618 kb on - strand, within MMP_RS04665 at 893.618 kb on - strand, within MMP_RS04665 at 893.634 kb on - strand, within MMP_RS04665 at 893.635 kb on + strand, within MMP_RS04665 at 893.657 kb on - strand, within MMP_RS04665 at 893.678 kb on + strand, within MMP_RS04665 at 893.678 kb on + strand, within MMP_RS04665 at 893.694 kb on - strand, within MMP_RS04665 at 893.694 kb on - strand, within MMP_RS04665 at 893.730 kb on + strand, within MMP_RS04665 at 893.730 kb on + strand, within MMP_RS04665 at 893.745 kb on - strand, within MMP_RS04665 at 893.809 kb on - strand, within MMP_RS04665 at 893.841 kb on - strand, within MMP_RS04665 at 893.965 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 894.025 kb on - strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.031 kb on + strand, within MMP_RS04665 at 894.048 kb on - strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.061 kb on - strand, within MMP_RS04665 at 894.068 kb on - strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.104 kb on + strand, within MMP_RS04665 at 894.130 kb on - strand, within MMP_RS04665 at 894.147 kb on - strand, within MMP_RS04665 at 894.152 kb on - strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.193 kb on - strand, within MMP_RS04665 at 894.194 kb on + strand, within MMP_RS04665 at 894.196 kb on + strand, within MMP_RS04665 at 894.207 kb on - strand, within MMP_RS04665 at 894.221 kb on - strand, within MMP_RS04665 at 894.252 kb on - strand, within MMP_RS04665 at 894.303 kb on - strand, within MMP_RS04665 at 894.345 kb on - strand at 894.346 kb on + strand at 894.445 kb on + strand at 894.445 kb on + strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.466 kb on + strand at 894.466 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.483 kb on - strand at 894.484 kb on + strand at 894.538 kb on - strand at 894.539 kb on + strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.650 kb on + strand at 894.665 kb on + strand at 894.665 kb on + strand at 894.666 kb on - strand at 894.680 kb on - strand at 894.681 kb on + strand at 894.727 kb on + strand at 894.757 kb on - strand at 894.757 kb on - strand at 894.758 kb on + strand at 894.762 kb on + strand at 894.804 kb on - strand at 894.805 kb on + strand at 894.809 kb on - strand at 894.810 kb on + strand at 894.892 kb on - strand at 894.903 kb on - strand at 894.906 kb on - strand at 894.911 kb on - strand at 894.911 kb on - strand at 894.922 kb on - strand at 894.988 kb on - strand at 895.000 kb on + strand, within MMP_RS04670 at 895.002 kb on + strand, within MMP_RS04670 at 895.006 kb on - strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.060 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.094 kb on - strand, within MMP_RS04670 at 895.130 kb on - strand, within MMP_RS04670 at 895.186 kb on - strand, within MMP_RS04670 at 895.232 kb on - strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.235 kb on + strand, within MMP_RS04670 at 895.417 kb on + strand, within MMP_RS04670 at 895.546 kb on + strand at 895.578 kb on + strand at 895.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 890,594 - -1.4 890,595 + -1.7 890,716 - -2.0 890,906 - -2.0 891,420 - +0.3 891,431 + -2.2 891,442 + -0.2 891,473 - -0.6 891,479 - +0.7 891,543 - +1.2 891,544 + -1.8 891,626 - +0.1 891,666 - -0.2 891,666 - +2.1 891,667 + +0.2 891,667 + -0.6 891,669 + -0.9 891,669 + +0.5 891,692 + +1.1 891,692 + +0.1 891,701 + -1.4 891,805 - +0.5 891,808 + +1.7 891,827 - +0.3 891,828 + +0.0 891,828 + -0.6 891,828 + -1.1 891,832 - -1.2 891,862 - MMP_RS04665 0.10 -1.2 891,863 + MMP_RS04665 0.10 +0.5 891,863 + MMP_RS04665 0.10 +0.8 891,917 - MMP_RS04665 0.12 +0.7 891,918 + MMP_RS04665 0.12 +0.5 891,922 - MMP_RS04665 0.12 -1.9 891,962 + MMP_RS04665 0.14 +0.8 891,962 + MMP_RS04665 0.14 -1.5 891,962 + MMP_RS04665 0.14 +1.8 891,988 + MMP_RS04665 0.14 +0.7 892,003 - MMP_RS04665 0.15 +0.7 892,031 + MMP_RS04665 0.16 -0.5 892,038 + MMP_RS04665 0.16 +1.2 892,039 - MMP_RS04665 0.16 -1.0 892,040 + MMP_RS04665 0.16 +1.5 892,043 - MMP_RS04665 0.16 -2.4 892,074 + MMP_RS04665 0.17 -0.6 892,094 - MMP_RS04665 0.18 +0.5 892,094 - MMP_RS04665 0.18 +1.3 892,137 - MMP_RS04665 0.19 +1.1 892,138 + MMP_RS04665 0.19 -0.9 892,138 + MMP_RS04665 0.19 +1.6 892,192 - MMP_RS04665 0.21 +0.0 892,252 - MMP_RS04665 0.23 +2.7 892,262 + MMP_RS04665 0.23 +0.8 892,262 + MMP_RS04665 0.23 +0.5 892,262 + MMP_RS04665 0.23 +1.8 892,282 - MMP_RS04665 0.24 +1.0 892,282 - MMP_RS04665 0.24 +0.0 892,288 - MMP_RS04665 0.24 -0.2 892,289 + MMP_RS04665 0.24 +1.6 892,289 + MMP_RS04665 0.24 +2.0 892,289 + MMP_RS04665 0.24 +2.3 892,292 - MMP_RS04665 0.24 +0.5 892,364 - MMP_RS04665 0.27 -3.0 892,525 + MMP_RS04665 0.32 +0.9 892,550 + MMP_RS04665 0.33 +0.6 892,566 + MMP_RS04665 0.33 -1.9 892,628 - MMP_RS04665 0.35 +1.6 892,629 + MMP_RS04665 0.35 +1.6 892,808 + MMP_RS04665 0.41 -0.0 892,844 - MMP_RS04665 0.42 +0.8 892,944 - MMP_RS04665 0.45 +0.2 893,122 - MMP_RS04665 0.51 -0.4 893,148 + MMP_RS04665 0.52 +1.2 893,175 + MMP_RS04665 0.53 +0.6 893,175 + MMP_RS04665 0.53 -0.6 893,208 - MMP_RS04665 0.54 -0.0 893,208 - MMP_RS04665 0.54 -0.0 893,459 + MMP_RS04665 0.62 +0.9 893,502 - MMP_RS04665 0.64 +0.1 893,502 - MMP_RS04665 0.64 +2.3 893,503 + MMP_RS04665 0.64 -3.4 893,506 - MMP_RS04665 0.64 +1.0 893,506 - MMP_RS04665 0.64 -1.6 893,507 + MMP_RS04665 0.64 -0.4 893,509 - MMP_RS04665 0.64 +0.9 893,521 - MMP_RS04665 0.64 -0.3 893,539 + MMP_RS04665 0.65 -0.3 893,579 - MMP_RS04665 0.66 -0.2 893,579 - MMP_RS04665 0.66 +0.3 893,583 - MMP_RS04665 0.66 -0.6 893,584 + MMP_RS04665 0.66 -1.3 893,584 + MMP_RS04665 0.66 +0.9 893,584 + MMP_RS04665 0.66 +0.5 893,595 - MMP_RS04665 0.67 -1.7 893,596 + MMP_RS04665 0.67 -0.6 893,611 - MMP_RS04665 0.67 -3.9 893,618 - MMP_RS04665 0.67 -0.8 893,618 - MMP_RS04665 0.67 +0.1 893,618 - MMP_RS04665 0.67 +3.1 893,634 - MMP_RS04665 0.68 -0.1 893,635 + MMP_RS04665 0.68 +1.0 893,657 - MMP_RS04665 0.69 +1.2 893,678 + MMP_RS04665 0.69 -2.2 893,678 + MMP_RS04665 0.69 +0.3 893,694 - MMP_RS04665 0.70 +0.1 893,694 - MMP_RS04665 0.70 +0.5 893,730 + MMP_RS04665 0.71 +1.9 893,730 + MMP_RS04665 0.71 +0.2 893,745 - MMP_RS04665 0.71 -2.5 893,809 - MMP_RS04665 0.73 +3.6 893,841 - MMP_RS04665 0.75 -2.1 893,965 + MMP_RS04665 0.79 -0.6 893,992 + MMP_RS04665 0.79 +0.8 893,992 + MMP_RS04665 0.79 +0.5 894,025 - MMP_RS04665 0.80 +0.5 894,026 + MMP_RS04665 0.81 +0.8 894,026 + MMP_RS04665 0.81 +1.5 894,030 - MMP_RS04665 0.81 -1.2 894,030 - MMP_RS04665 0.81 -0.4 894,030 - MMP_RS04665 0.81 -0.2 894,030 - MMP_RS04665 0.81 +1.9 894,031 + MMP_RS04665 0.81 +0.1 894,048 - MMP_RS04665 0.81 +0.6 894,049 + MMP_RS04665 0.81 +0.5 894,049 + MMP_RS04665 0.81 -1.0 894,061 - MMP_RS04665 0.82 +2.3 894,068 - MMP_RS04665 0.82 -2.3 894,069 + MMP_RS04665 0.82 +0.3 894,069 + MMP_RS04665 0.82 +1.5 894,104 + MMP_RS04665 0.83 +0.3 894,130 - MMP_RS04665 0.84 -1.2 894,147 - MMP_RS04665 0.84 +1.6 894,152 - MMP_RS04665 0.85 +2.2 894,179 + MMP_RS04665 0.85 +1.0 894,179 + MMP_RS04665 0.85 +0.5 894,193 - MMP_RS04665 0.86 +1.5 894,194 + MMP_RS04665 0.86 +0.8 894,196 + MMP_RS04665 0.86 +1.8 894,207 - MMP_RS04665 0.86 +0.5 894,221 - MMP_RS04665 0.87 -0.2 894,252 - MMP_RS04665 0.88 -0.1 894,303 - MMP_RS04665 0.90 -0.0 894,345 - +0.8 894,346 + +0.4 894,445 + -1.9 894,445 + -1.7 894,465 - +1.2 894,465 - +1.0 894,465 - -1.3 894,466 + -1.6 894,466 + -3.5 894,470 + +2.5 894,470 + +0.0 894,470 + +2.7 894,483 - -2.0 894,484 + +0.1 894,538 - +2.0 894,539 + +1.2 894,649 - -0.2 894,649 - +1.7 894,649 - -0.5 894,649 - -2.2 894,650 + -0.1 894,665 + -0.1 894,665 + +3.0 894,666 - +2.1 894,680 - +1.2 894,681 + +1.8 894,727 + -2.2 894,757 - -1.1 894,757 - -0.7 894,758 + -0.5 894,762 + -0.8 894,804 - +0.4 894,805 + +0.8 894,809 - -1.7 894,810 + +1.7 894,892 - +2.8 894,903 - +0.7 894,906 - +0.9 894,911 - -2.7 894,911 - +0.3 894,922 - -0.0 894,988 - -1.5 895,000 + MMP_RS04670 0.11 -0.4 895,002 + MMP_RS04670 0.11 -0.6 895,006 - MMP_RS04670 0.12 +0.0 895,007 + MMP_RS04670 0.12 -0.0 895,007 + MMP_RS04670 0.12 -2.4 895,060 + MMP_RS04670 0.20 -0.7 895,067 + MMP_RS04670 0.21 +0.1 895,067 + MMP_RS04670 0.21 -1.2 895,094 - MMP_RS04670 0.25 -0.1 895,130 - MMP_RS04670 0.31 +0.8 895,186 - MMP_RS04670 0.39 +0.4 895,232 - MMP_RS04670 0.46 -1.5 895,233 + MMP_RS04670 0.46 -0.4 895,233 + MMP_RS04670 0.46 +0.0 895,235 + MMP_RS04670 0.47 +3.4 895,417 + MMP_RS04670 0.74 +1.1 895,546 + +1.5 895,578 + +1.9 895,625 - +0.8
Or see this region's nucleotide sequence