Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides MMP_RS04620 and MMP_RS04625 are separated by 197 nucleotides MMP_RS04625 and MMP_RS04630 are separated by 213 nucleotides MMP_RS04630 and MMP_RS04635 are separated by 23 nucleotides
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
MMP_RS04625: MMP_RS04625 - DEAD/DEAH box helicase, at 881,791 to 884,034
_RS04625
MMP_RS04630: MMP_RS04630 - 3'-5' exonuclease, at 884,248 to 884,823
_RS04630
MMP_RS04635: MMP_RS04635 - GNAT family N-acetyltransferase, at 884,847 to 885,395
_RS04635
Position (kb) 881
882
883
884
885 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.232 kb on + strand, within MMP_RS04620 at 881.319 kb on + strand, within MMP_RS04620 at 881.331 kb on + strand, within MMP_RS04620 at 881.337 kb on + strand, within MMP_RS04620 at 881.340 kb on + strand, within MMP_RS04620 at 881.366 kb on - strand, within MMP_RS04620 at 881.415 kb on + strand, within MMP_RS04620 at 881.446 kb on - strand, within MMP_RS04620 at 881.464 kb on - strand, within MMP_RS04620 at 881.522 kb on - strand, within MMP_RS04620 at 881.523 kb on + strand, within MMP_RS04620 at 881.572 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.585 kb on - strand at 881.631 kb on + strand at 881.634 kb on - strand at 881.635 kb on + strand at 881.646 kb on - strand at 881.646 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.649 kb on - strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.650 kb on + strand at 881.663 kb on - strand at 881.668 kb on + strand at 881.675 kb on + strand at 881.684 kb on - strand at 881.684 kb on - strand at 881.688 kb on + strand at 881.690 kb on - strand at 881.691 kb on + strand at 881.691 kb on + strand at 881.694 kb on - strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.695 kb on + strand at 881.700 kb on - strand at 881.701 kb on + strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.703 kb on - strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.707 kb on - strand at 881.708 kb on + strand at 881.736 kb on + strand at 881.740 kb on - strand at 881.740 kb on - strand at 881.743 kb on + strand at 881.758 kb on + strand at 881.799 kb on + strand at 881.835 kb on + strand at 881.902 kb on + strand at 882.011 kb on - strand at 882.072 kb on + strand, within MMP_RS04625 at 882.105 kb on - strand, within MMP_RS04625 at 882.106 kb on + strand, within MMP_RS04625 at 882.135 kb on - strand, within MMP_RS04625 at 882.136 kb on + strand, within MMP_RS04625 at 882.136 kb on + strand, within MMP_RS04625 at 882.136 kb on + strand, within MMP_RS04625 at 882.141 kb on - strand, within MMP_RS04625 at 882.142 kb on + strand, within MMP_RS04625 at 882.142 kb on + strand, within MMP_RS04625 at 882.142 kb on + strand, within MMP_RS04625 at 882.198 kb on + strand, within MMP_RS04625 at 882.198 kb on + strand, within MMP_RS04625 at 882.203 kb on - strand, within MMP_RS04625 at 882.228 kb on + strand, within MMP_RS04625 at 882.258 kb on + strand, within MMP_RS04625 at 882.258 kb on + strand, within MMP_RS04625 at 882.392 kb on - strand, within MMP_RS04625 at 882.474 kb on - strand, within MMP_RS04625 at 882.699 kb on + strand, within MMP_RS04625 at 882.724 kb on - strand, within MMP_RS04625 at 882.771 kb on + strand, within MMP_RS04625 at 883.170 kb on + strand, within MMP_RS04625 at 883.479 kb on + strand, within MMP_RS04625 at 883.641 kb on + strand, within MMP_RS04625 at 883.641 kb on + strand, within MMP_RS04625 at 883.641 kb on + strand, within MMP_RS04625 at 883.650 kb on + strand, within MMP_RS04625 at 883.703 kb on + strand, within MMP_RS04625 at 883.783 kb on - strand, within MMP_RS04625 at 883.784 kb on + strand, within MMP_RS04625 at 883.891 kb on - strand at 883.911 kb on - strand at 884.002 kb on - strand at 884.043 kb on - strand at 884.064 kb on + strand at 884.149 kb on + strand at 884.159 kb on - strand at 884.159 kb on - strand at 884.159 kb on - strand at 884.160 kb on + strand at 884.163 kb on - strand at 884.166 kb on + strand at 884.173 kb on + strand at 884.184 kb on - strand at 884.185 kb on + strand at 884.185 kb on + strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.186 kb on - strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.187 kb on + strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.190 kb on - strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.191 kb on + strand at 884.200 kb on + strand at 884.262 kb on + strand at 884.471 kb on - strand, within MMP_RS04630 at 884.496 kb on + strand, within MMP_RS04630 at 884.511 kb on - strand, within MMP_RS04630 at 884.525 kb on - strand, within MMP_RS04630 at 884.581 kb on + strand, within MMP_RS04630 at 884.581 kb on + strand, within MMP_RS04630 at 884.638 kb on - strand, within MMP_RS04630 at 884.641 kb on + strand, within MMP_RS04630 at 884.756 kb on + strand, within MMP_RS04630 at 884.769 kb on + strand at 884.771 kb on - strand at 884.771 kb on - strand at 884.771 kb on - strand at 884.773 kb on - strand at 884.774 kb on + strand at 884.810 kb on - strand at 884.811 kb on + strand at 884.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 880,889 + MMP_RS04615 0.77 +1.0 880,912 - +4.9 880,912 - MMP_RS04615 0.84 +1.9 880,913 + MMP_RS04615 0.85 -1.6 881,024 - MMP_RS04620 0.11 -0.3 881,223 - MMP_RS04620 0.42 +0.7 881,223 - MMP_RS04620 0.42 +0.9 881,223 - MMP_RS04620 0.42 +1.0 881,224 + MMP_RS04620 0.42 +2.1 881,224 + MMP_RS04620 0.42 +2.6 881,224 + MMP_RS04620 0.42 +1.6 881,224 + MMP_RS04620 0.42 +2.3 881,224 + MMP_RS04620 0.42 +4.0 881,224 + MMP_RS04620 0.42 +0.3 881,224 + MMP_RS04620 0.42 +2.5 881,224 + MMP_RS04620 0.42 +1.3 881,224 + MMP_RS04620 0.42 +2.8 881,232 + MMP_RS04620 0.43 +3.6 881,319 + MMP_RS04620 0.57 -0.3 881,331 + MMP_RS04620 0.59 +2.2 881,337 + MMP_RS04620 0.60 +1.6 881,340 + MMP_RS04620 0.60 +2.6 881,366 - MMP_RS04620 0.64 +2.1 881,415 + MMP_RS04620 0.72 +1.7 881,446 - MMP_RS04620 0.77 +2.2 881,464 - MMP_RS04620 0.80 +1.4 881,522 - MMP_RS04620 0.89 -0.0 881,523 + MMP_RS04620 0.89 -1.6 881,572 - -0.4 881,585 - +0.9 881,585 - +2.4 881,585 - +0.5 881,585 - +2.3 881,631 + -0.7 881,634 - +0.4 881,635 + -2.3 881,646 - -0.7 881,646 - +0.8 881,649 - -0.9 881,649 - +1.5 881,649 - +1.7 881,650 + +1.9 881,650 + +2.6 881,650 + -0.9 881,650 + +1.1 881,650 + +1.1 881,663 - -2.6 881,668 + +1.3 881,675 + -1.9 881,684 - -0.8 881,684 - +1.6 881,688 + +0.4 881,690 - -0.7 881,691 + +0.1 881,691 + +0.2 881,694 - -0.1 881,695 + +0.4 881,695 + -2.2 881,695 + +0.5 881,700 - -0.7 881,701 + +0.6 881,703 - -0.6 881,703 - +1.5 881,703 - +0.4 881,703 - -1.9 881,703 - +1.0 881,704 + +1.8 881,704 + +0.5 881,704 + +1.5 881,704 + -1.1 881,707 - +1.1 881,707 - +0.1 881,707 - +0.4 881,707 - -1.6 881,708 + +2.3 881,736 + -0.4 881,740 - +0.8 881,740 - -0.5 881,743 + +0.8 881,758 + -1.0 881,799 + +1.7 881,835 + +1.4 881,902 + -1.4 882,011 - +2.6 882,072 + MMP_RS04625 0.13 +0.6 882,105 - MMP_RS04625 0.14 +0.0 882,106 + MMP_RS04625 0.14 +2.3 882,135 - MMP_RS04625 0.15 +2.3 882,136 + MMP_RS04625 0.15 +0.3 882,136 + MMP_RS04625 0.15 +1.0 882,136 + MMP_RS04625 0.15 +1.8 882,141 - MMP_RS04625 0.16 -0.1 882,142 + MMP_RS04625 0.16 +1.4 882,142 + MMP_RS04625 0.16 +0.5 882,142 + MMP_RS04625 0.16 -0.4 882,198 + MMP_RS04625 0.18 +2.4 882,198 + MMP_RS04625 0.18 -2.8 882,203 - MMP_RS04625 0.18 +1.2 882,228 + MMP_RS04625 0.19 +0.6 882,258 + MMP_RS04625 0.21 +1.6 882,258 + MMP_RS04625 0.21 +0.3 882,392 - MMP_RS04625 0.27 +1.7 882,474 - MMP_RS04625 0.30 +0.4 882,699 + MMP_RS04625 0.40 +1.3 882,724 - MMP_RS04625 0.42 +0.2 882,771 + MMP_RS04625 0.44 +0.1 883,170 + MMP_RS04625 0.61 +1.3 883,479 + MMP_RS04625 0.75 -0.2 883,641 + MMP_RS04625 0.82 +3.4 883,641 + MMP_RS04625 0.82 +1.5 883,641 + MMP_RS04625 0.82 +0.7 883,650 + MMP_RS04625 0.83 +2.5 883,703 + MMP_RS04625 0.85 +0.4 883,783 - MMP_RS04625 0.89 +0.2 883,784 + MMP_RS04625 0.89 -0.5 883,891 - +2.0 883,911 - +0.9 884,002 - -1.1 884,043 - +0.7 884,064 + -0.8 884,149 + -1.0 884,159 - -4.6 884,159 - +0.0 884,159 - -1.7 884,160 + -0.4 884,163 - -0.1 884,166 + +1.3 884,173 + -0.7 884,184 - +0.9 884,185 + +0.4 884,185 + +0.7 884,186 - +1.3 884,186 - +1.2 884,186 - -0.7 884,186 - -0.4 884,186 - +1.5 884,186 - +1.2 884,187 + +1.0 884,187 + +0.6 884,187 + +0.8 884,187 + -1.8 884,187 + +1.2 884,187 + -0.2 884,187 + +1.7 884,188 - +1.2 884,188 - +1.0 884,188 - +0.0 884,188 - -1.1 884,188 - +0.5 884,189 + -1.7 884,189 + +0.3 884,189 + +0.3 884,189 + -2.4 884,189 + +1.1 884,189 + -1.2 884,190 - +1.1 884,190 - +2.3 884,190 - -3.0 884,190 - -0.6 884,190 - -0.2 884,190 - +1.3 884,190 - -1.5 884,190 - -1.8 884,191 + +1.8 884,191 + -0.5 884,191 + -1.2 884,191 + +1.3 884,191 + +0.5 884,191 + +0.9 884,191 + +0.7 884,200 + +0.0 884,262 + +0.1 884,471 - MMP_RS04630 0.39 +0.6 884,496 + MMP_RS04630 0.43 -0.8 884,511 - MMP_RS04630 0.46 +2.2 884,525 - MMP_RS04630 0.48 -0.6 884,581 + MMP_RS04630 0.58 +0.1 884,581 + MMP_RS04630 0.58 +1.6 884,638 - MMP_RS04630 0.68 +0.3 884,641 + MMP_RS04630 0.68 +0.2 884,756 + MMP_RS04630 0.88 +0.3 884,769 + +0.5 884,771 - +0.7 884,771 - +0.4 884,771 - -0.3 884,773 - +0.1 884,774 + +0.5 884,810 - +0.6 884,811 + -0.5 884,837 + +0.8
Or see this region's nucleotide sequence