Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04485

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04480 and MMP_RS04485 are separated by 0 nucleotidesMMP_RS04485 and MMP_RS04490 are separated by 149 nucleotidesMMP_RS04490 and MMP_RS04495 are separated by 8 nucleotides MMP_RS04480: MMP_RS04480 - lysine 2 3-aminomutase, at 852,237 to 853,538 _RS04480 MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363 _RS04485 MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989 _RS04490 MMP_RS04495: MMP_RS04495 - cation:proton antiporter, at 854,998 to 856,164 _RS04495 Position (kb) 853 854 855Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 852.622 kb on - strand, within MMP_RS04480at 852.627 kb on - strand, within MMP_RS04480at 852.632 kb on + strand, within MMP_RS04480at 852.741 kb on + strand, within MMP_RS04480at 852.752 kb on - strand, within MMP_RS04480at 852.753 kb on + strand, within MMP_RS04480at 852.757 kb on - strand, within MMP_RS04480at 852.812 kb on + strand, within MMP_RS04480at 852.840 kb on + strand, within MMP_RS04480at 852.858 kb on + strand, within MMP_RS04480at 852.953 kb on - strand, within MMP_RS04480at 852.953 kb on - strand, within MMP_RS04480at 852.954 kb on + strand, within MMP_RS04480at 853.077 kb on - strand, within MMP_RS04480at 853.077 kb on - strand, within MMP_RS04480at 853.078 kb on + strand, within MMP_RS04480at 853.129 kb on + strand, within MMP_RS04480at 853.131 kb on - strand, within MMP_RS04480at 853.131 kb on - strand, within MMP_RS04480at 853.132 kb on + strand, within MMP_RS04480at 853.214 kb on + strand, within MMP_RS04480at 853.245 kb on + strand, within MMP_RS04480at 853.248 kb on - strand, within MMP_RS04480at 853.248 kb on - strand, within MMP_RS04480at 853.249 kb on + strand, within MMP_RS04480at 853.255 kb on - strand, within MMP_RS04480at 853.299 kb on - strand, within MMP_RS04480at 853.300 kb on + strand, within MMP_RS04480at 853.362 kb on - strand, within MMP_RS04480at 853.478 kb on + strandat 853.495 kb on - strandat 853.495 kb on - strandat 853.496 kb on + strandat 853.580 kb on + strandat 853.600 kb on - strandat 853.601 kb on + strandat 853.601 kb on + strandat 853.601 kb on + strandat 853.602 kb on - strandat 853.602 kb on - strandat 853.603 kb on + strandat 853.604 kb on - strandat 853.605 kb on + strandat 853.735 kb on + strand, within MMP_RS04485at 853.782 kb on - strand, within MMP_RS04485at 853.783 kb on + strand, within MMP_RS04485at 853.787 kb on - strand, within MMP_RS04485at 853.788 kb on + strand, within MMP_RS04485at 853.788 kb on + strand, within MMP_RS04485at 853.945 kb on - strand, within MMP_RS04485at 853.945 kb on - strand, within MMP_RS04485at 854.007 kb on + strand, within MMP_RS04485at 854.007 kb on + strand, within MMP_RS04485at 854.008 kb on - strand, within MMP_RS04485at 854.009 kb on + strand, within MMP_RS04485at 854.011 kb on - strand, within MMP_RS04485at 854.032 kb on - strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.167 kb on + strand, within MMP_RS04485at 854.175 kb on - strand, within MMP_RS04485at 854.177 kb on - strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.279 kb on - strand, within MMP_RS04485at 854.303 kb on - strandat 854.306 kb on - strandat 854.306 kb on - strandat 854.346 kb on - strandat 854.425 kb on + strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.430 kb on - strandat 854.431 kb on + strandat 854.431 kb on + strandat 854.481 kb on - strandat 854.486 kb on - strandat 854.492 kb on + strandat 854.492 kb on + strandat 854.619 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.639 kb on + strand, within MMP_RS04490at 854.665 kb on + strand, within MMP_RS04490at 854.698 kb on + strand, within MMP_RS04490at 854.706 kb on + strand, within MMP_RS04490at 854.756 kb on + strand, within MMP_RS04490at 854.768 kb on + strand, within MMP_RS04490at 854.837 kb on + strand, within MMP_RS04490at 854.841 kb on - strand, within MMP_RS04490at 854.849 kb on + strand, within MMP_RS04490at 854.862 kb on - strand, within MMP_RS04490at 854.862 kb on - strand, within MMP_RS04490at 854.888 kb on - strand, within MMP_RS04490at 854.926 kb on - strand, within MMP_RS04490at 854.926 kb on - strand, within MMP_RS04490at 854.927 kb on + strand, within MMP_RS04490at 854.931 kb on - strand, within MMP_RS04490at 854.965 kb on - strandat 854.965 kb on - strandat 854.966 kb on + strandat 855.040 kb on + strandat 855.041 kb on - strandat 855.066 kb on + strandat 855.230 kb on - strand, within MMP_RS04495at 855.262 kb on + strand, within MMP_RS04495

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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852,622 - MMP_RS04480 0.30 -2.2
852,627 - MMP_RS04480 0.30 +0.1
852,632 + MMP_RS04480 0.30 -2.0
852,741 + MMP_RS04480 0.39 -1.4
852,752 - MMP_RS04480 0.40 -2.7
852,753 + MMP_RS04480 0.40 +0.3
852,757 - MMP_RS04480 0.40 -1.8
852,812 + MMP_RS04480 0.44 -0.2
852,840 + MMP_RS04480 0.46 -1.2
852,858 + MMP_RS04480 0.48 -0.9
852,953 - MMP_RS04480 0.55 -2.6
852,953 - MMP_RS04480 0.55 -0.5
852,954 + MMP_RS04480 0.55 -1.3
853,077 - MMP_RS04480 0.65 +0.5
853,077 - MMP_RS04480 0.65 +0.1
853,078 + MMP_RS04480 0.65 -1.5
853,129 + MMP_RS04480 0.69 -1.0
853,131 - MMP_RS04480 0.69 -3.2
853,131 - MMP_RS04480 0.69 -1.4
853,132 + MMP_RS04480 0.69 -1.3
853,214 + MMP_RS04480 0.75 -1.1
853,245 + MMP_RS04480 0.77 -2.6
853,248 - MMP_RS04480 0.78 -1.9
853,248 - MMP_RS04480 0.78 -0.6
853,249 + MMP_RS04480 0.78 -2.2
853,255 - MMP_RS04480 0.78 -1.1
853,299 - MMP_RS04480 0.82 -0.1
853,300 + MMP_RS04480 0.82 -0.8
853,362 - MMP_RS04480 0.86 -3.1
853,478 + -1.5
853,495 - -1.8
853,495 - -1.4
853,496 + -0.4
853,580 + -2.2
853,600 - -0.8
853,601 + -1.4
853,601 + +0.8
853,601 + -1.8
853,602 - -1.6
853,602 - -0.9
853,603 + -0.3
853,604 - -2.9
853,605 + +0.0
853,735 + MMP_RS04485 0.24 -2.0
853,782 - MMP_RS04485 0.29 -2.3
853,783 + MMP_RS04485 0.30 -2.0
853,787 - MMP_RS04485 0.30 -0.6
853,788 + MMP_RS04485 0.30 -2.7
853,788 + MMP_RS04485 0.30 -1.3
853,945 - MMP_RS04485 0.49 -0.9
853,945 - MMP_RS04485 0.49 +0.1
854,007 + MMP_RS04485 0.57 -2.3
854,007 + MMP_RS04485 0.57 -0.5
854,008 - MMP_RS04485 0.57 -0.9
854,009 + MMP_RS04485 0.57 -3.0
854,011 - MMP_RS04485 0.57 -3.2
854,032 - MMP_RS04485 0.60 -1.1
854,097 + MMP_RS04485 0.68 -1.5
854,097 + MMP_RS04485 0.68 -0.3
854,167 + MMP_RS04485 0.76 +0.2
854,175 - MMP_RS04485 0.77 +0.9
854,177 - MMP_RS04485 0.77 -2.8
854,178 + MMP_RS04485 0.77 -1.9
854,178 + MMP_RS04485 0.77 -2.6
854,178 + MMP_RS04485 0.77 -1.8
854,178 + MMP_RS04485 0.77 -1.5
854,178 + MMP_RS04485 0.77 -3.4
854,279 - MMP_RS04485 0.90 -2.5
854,303 - -2.5
854,306 - -0.4
854,306 - -2.2
854,346 - +0.1
854,425 + +0.1
854,428 - -0.6
854,428 - +2.2
854,428 - +0.8
854,428 - +0.5
854,429 + +1.1
854,429 + -0.6
854,429 + -3.1
854,429 + +2.0
854,429 + +0.0
854,429 + -1.2
854,430 - -0.1
854,431 + +0.3
854,431 + +1.3
854,481 - +0.5
854,486 - +0.2
854,492 + -1.8
854,492 + -0.6
854,619 - MMP_RS04490 0.22 +0.3
854,638 - MMP_RS04490 0.26 -0.0
854,638 - MMP_RS04490 0.26 +0.0
854,638 - MMP_RS04490 0.26 -0.9
854,638 - MMP_RS04490 0.26 -0.9
854,638 - MMP_RS04490 0.26 -1.1
854,639 + MMP_RS04490 0.26 +0.0
854,665 + MMP_RS04490 0.32 -0.2
854,698 + MMP_RS04490 0.39 +0.6
854,706 + MMP_RS04490 0.40 -1.8
854,756 + MMP_RS04490 0.51 +0.5
854,768 + MMP_RS04490 0.53 -0.1
854,837 + MMP_RS04490 0.68 -1.9
854,841 - MMP_RS04490 0.69 +2.2
854,849 + MMP_RS04490 0.70 +1.2
854,862 - MMP_RS04490 0.73 +0.3
854,862 - MMP_RS04490 0.73 -0.2
854,888 - MMP_RS04490 0.79 -0.2
854,926 - MMP_RS04490 0.87 -1.2
854,926 - MMP_RS04490 0.87 +0.1
854,927 + MMP_RS04490 0.87 +0.3
854,931 - MMP_RS04490 0.88 +0.4
854,965 - +0.3
854,965 - -0.4
854,966 + +2.1
855,040 + -0.6
855,041 - -0.8
855,066 + -1.4
855,230 - MMP_RS04495 0.20 +2.2
855,262 + MMP_RS04495 0.23 +0.1

Or see this region's nucleotide sequence