Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04380 and MMP_RS04385 are separated by 59 nucleotides MMP_RS04385 and MMP_RS04390 are separated by 90 nucleotides MMP_RS04390 and MMP_RS04395 are separated by 63 nucleotides MMP_RS04395 and MMP_RS04400 are separated by 42 nucleotides MMP_RS04400 and MMP_RS04405 are separated by 257 nucleotides MMP_RS04405 and MMP_RS04410 are separated by 50 nucleotides
MMP_RS04380: MMP_RS04380 - DUF4013 domain-containing protein, at 835,811 to 836,656
_RS04380
MMP_RS04385: MMP_RS04385 - hypothetical protein, at 836,716 to 837,114
_RS04385
MMP_RS04390: MMP_RS04390 - hypothetical protein, at 837,205 to 837,441
_RS04390
MMP_RS04395: MMP_RS04395 - Bax inhibitor-1/YccA family protein, at 837,505 to 838,239
_RS04395
MMP_RS04400: MMP_RS04400 - hypothetical protein, at 838,282 to 838,638
_RS04400
MMP_RS04405: MMP_RS04405 - hypothetical protein, at 838,896 to 839,165
_RS04405
MMP_RS04410: MMP_RS04410 - hypothetical protein, at 839,216 to 839,815
_RS04410
Position (kb) 837
838
839 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 836.520 kb on - strand, within MMP_RS04380 at 836.521 kb on + strand, within MMP_RS04380 at 836.567 kb on - strand, within MMP_RS04380 at 836.567 kb on - strand, within MMP_RS04380 at 836.585 kb on - strand at 836.594 kb on - strand at 836.594 kb on - strand at 836.595 kb on + strand at 836.596 kb on - strand at 836.596 kb on - strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.599 kb on - strand at 836.599 kb on - strand at 836.600 kb on + strand at 836.600 kb on + strand at 836.653 kb on + strand at 836.655 kb on + strand at 836.684 kb on - strand at 836.685 kb on + strand at 836.685 kb on + strand at 836.690 kb on - strand at 836.694 kb on - strand at 836.722 kb on - strand at 836.722 kb on - strand at 836.723 kb on + strand at 836.723 kb on + strand at 836.723 kb on + strand at 836.728 kb on + strand at 836.760 kb on - strand, within MMP_RS04385 at 836.760 kb on - strand, within MMP_RS04385 at 836.760 kb on - strand, within MMP_RS04385 at 836.760 kb on - strand, within MMP_RS04385 at 836.761 kb on + strand, within MMP_RS04385 at 836.761 kb on + strand, within MMP_RS04385 at 836.761 kb on + strand, within MMP_RS04385 at 836.763 kb on + strand, within MMP_RS04385 at 836.763 kb on + strand, within MMP_RS04385 at 836.766 kb on - strand, within MMP_RS04385 at 836.772 kb on + strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.814 kb on + strand, within MMP_RS04385 at 836.845 kb on - strand, within MMP_RS04385 at 836.845 kb on - strand, within MMP_RS04385 at 836.845 kb on - strand, within MMP_RS04385 at 836.850 kb on + strand, within MMP_RS04385 at 836.877 kb on - strand, within MMP_RS04385 at 836.877 kb on - strand, within MMP_RS04385 at 836.891 kb on - strand, within MMP_RS04385 at 836.892 kb on + strand, within MMP_RS04385 at 836.921 kb on + strand, within MMP_RS04385 at 836.930 kb on + strand, within MMP_RS04385 at 836.948 kb on - strand, within MMP_RS04385 at 836.957 kb on + strand, within MMP_RS04385 at 836.961 kb on - strand, within MMP_RS04385 at 836.962 kb on + strand, within MMP_RS04385 at 836.981 kb on - strand, within MMP_RS04385 at 837.017 kb on - strand, within MMP_RS04385 at 837.019 kb on - strand, within MMP_RS04385 at 837.020 kb on + strand, within MMP_RS04385 at 837.031 kb on - strand, within MMP_RS04385 at 837.034 kb on + strand, within MMP_RS04385 at 837.042 kb on - strand, within MMP_RS04385 at 837.042 kb on - strand, within MMP_RS04385 at 837.043 kb on + strand, within MMP_RS04385 at 837.043 kb on + strand, within MMP_RS04385 at 837.044 kb on - strand at 837.044 kb on - strand, within MMP_RS04385 at 837.044 kb on - strand, within MMP_RS04385 at 837.045 kb on + strand, within MMP_RS04385 at 837.045 kb on + strand, within MMP_RS04385 at 837.048 kb on - strand, within MMP_RS04385 at 837.048 kb on - strand, within MMP_RS04385 at 837.048 kb on - strand, within MMP_RS04385 at 837.079 kb on - strand at 837.079 kb on - strand at 837.107 kb on - strand at 837.121 kb on - strand at 837.159 kb on - strand at 837.164 kb on - strand at 837.164 kb on - strand at 837.165 kb on + strand at 837.180 kb on - strand at 837.180 kb on - strand at 837.181 kb on + strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.186 kb on - strand at 837.186 kb on - strand at 837.186 kb on - strand at 837.187 kb on + strand at 837.209 kb on - strand at 837.210 kb on + strand at 837.211 kb on - strand at 837.211 kb on - strand at 837.212 kb on + strand at 837.222 kb on - strand at 837.230 kb on - strand, within MMP_RS04390 at 837.259 kb on - strand, within MMP_RS04390 at 837.259 kb on - strand, within MMP_RS04390 at 837.260 kb on + strand, within MMP_RS04390 at 837.261 kb on - strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.264 kb on - strand, within MMP_RS04390 at 837.271 kb on + strand, within MMP_RS04390 at 837.287 kb on - strand, within MMP_RS04390 at 837.287 kb on - strand, within MMP_RS04390 at 837.314 kb on - strand, within MMP_RS04390 at 837.315 kb on + strand, within MMP_RS04390 at 837.356 kb on - strand, within MMP_RS04390 at 837.356 kb on - strand, within MMP_RS04390 at 837.356 kb on - strand, within MMP_RS04390 at 837.450 kb on + strand at 837.500 kb on - strand at 837.500 kb on - strand at 837.500 kb on - strand at 837.502 kb on - strand at 837.502 kb on - strand at 837.502 kb on - strand at 837.503 kb on + strand at 837.503 kb on + strand at 837.504 kb on - strand at 837.504 kb on - strand at 837.505 kb on + strand at 837.538 kb on + strand at 837.560 kb on + strand at 837.584 kb on - strand, within MMP_RS04395 at 837.584 kb on - strand, within MMP_RS04395 at 837.584 kb on - strand, within MMP_RS04395 at 837.585 kb on + strand, within MMP_RS04395 at 837.585 kb on + strand, within MMP_RS04395 at 837.597 kb on + strand, within MMP_RS04395 at 837.600 kb on - strand, within MMP_RS04395 at 837.631 kb on + strand, within MMP_RS04395 at 837.631 kb on + strand, within MMP_RS04395 at 837.805 kb on + strand, within MMP_RS04395 at 837.861 kb on - strand, within MMP_RS04395 at 837.941 kb on - strand, within MMP_RS04395 at 837.942 kb on - strand, within MMP_RS04395 at 837.971 kb on - strand, within MMP_RS04395 at 837.972 kb on + strand, within MMP_RS04395 at 837.972 kb on + strand, within MMP_RS04395 at 837.973 kb on - strand, within MMP_RS04395 at 837.973 kb on - strand, within MMP_RS04395 at 837.974 kb on + strand, within MMP_RS04395 at 837.986 kb on - strand, within MMP_RS04395 at 837.986 kb on - strand, within MMP_RS04395 at 838.011 kb on - strand, within MMP_RS04395 at 838.012 kb on + strand, within MMP_RS04395 at 838.012 kb on + strand, within MMP_RS04395 at 838.068 kb on + strand, within MMP_RS04395 at 838.070 kb on - strand, within MMP_RS04395 at 838.126 kb on - strand, within MMP_RS04395 at 838.138 kb on + strand, within MMP_RS04395 at 838.142 kb on + strand, within MMP_RS04395 at 838.181 kb on - strand at 838.182 kb on + strand at 838.191 kb on + strand at 838.247 kb on - strand at 838.247 kb on - strand at 838.247 kb on - strand at 838.248 kb on + strand at 838.248 kb on + strand at 838.249 kb on - strand at 838.249 kb on - strand at 838.250 kb on + strand at 838.252 kb on - strand at 838.252 kb on - strand at 838.252 kb on - strand at 838.255 kb on - strand at 838.261 kb on - strand at 838.261 kb on - strand at 838.381 kb on - strand, within MMP_RS04400 at 838.430 kb on + strand, within MMP_RS04400 at 838.439 kb on - strand, within MMP_RS04400 at 838.440 kb on + strand, within MMP_RS04400 at 838.440 kb on + strand, within MMP_RS04400 at 838.440 kb on + strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.510 kb on - strand, within MMP_RS04400 at 838.534 kb on - strand, within MMP_RS04400 at 838.541 kb on - strand, within MMP_RS04400 at 838.541 kb on - strand, within MMP_RS04400 at 838.554 kb on - strand, within MMP_RS04400 at 838.560 kb on + strand, within MMP_RS04400 at 838.572 kb on - strand, within MMP_RS04400 at 838.573 kb on + strand, within MMP_RS04400 at 838.584 kb on - strand, within MMP_RS04400 at 838.609 kb on - strand at 838.611 kb on - strand at 838.686 kb on + strand at 838.689 kb on + strand at 838.732 kb on + strand at 838.758 kb on - strand at 838.846 kb on + strand at 838.849 kb on - strand at 838.849 kb on - strand at 838.849 kb on - strand at 838.850 kb on + strand at 838.850 kb on + strand at 838.852 kb on + strand at 838.859 kb on - strand at 838.863 kb on - strand at 838.867 kb on - strand at 838.903 kb on + strand at 838.927 kb on + strand, within MMP_RS04405 at 838.943 kb on + strand, within MMP_RS04405 at 838.990 kb on - strand, within MMP_RS04405 at 838.993 kb on - strand, within MMP_RS04405 at 839.004 kb on + strand, within MMP_RS04405 at 839.016 kb on - strand, within MMP_RS04405 at 839.026 kb on - strand, within MMP_RS04405 at 839.049 kb on - strand, within MMP_RS04405 at 839.050 kb on + strand, within MMP_RS04405 at 839.065 kb on - strand, within MMP_RS04405 at 839.076 kb on + strand, within MMP_RS04405 at 839.138 kb on - strand, within MMP_RS04405 at 839.169 kb on + strand at 839.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 836,520 - MMP_RS04380 0.84 +0.8 836,521 + MMP_RS04380 0.84 +0.3 836,567 - MMP_RS04380 0.89 +1.1 836,567 - MMP_RS04380 0.89 +0.2 836,585 - -1.3 836,594 - +0.2 836,594 - -0.9 836,595 + +1.0 836,596 - -0.6 836,596 - -0.2 836,597 + -0.6 836,597 + -0.5 836,597 + +0.5 836,599 - +1.2 836,599 - +0.4 836,600 + +1.3 836,600 + +0.9 836,653 + +1.1 836,655 + +3.3 836,684 - -1.1 836,685 + -0.5 836,685 + +1.3 836,690 - +0.2 836,694 - -0.4 836,722 - +0.1 836,722 - +0.3 836,723 + -0.4 836,723 + -0.4 836,723 + +0.4 836,728 + -0.6 836,760 - MMP_RS04385 0.11 +0.5 836,760 - MMP_RS04385 0.11 -2.0 836,760 - MMP_RS04385 0.11 -0.2 836,760 - MMP_RS04385 0.11 +1.2 836,761 + MMP_RS04385 0.11 +0.4 836,761 + MMP_RS04385 0.11 -0.3 836,761 + MMP_RS04385 0.11 +1.3 836,763 + MMP_RS04385 0.12 -0.9 836,763 + MMP_RS04385 0.12 -0.1 836,766 - MMP_RS04385 0.13 -0.2 836,772 + MMP_RS04385 0.14 -0.6 836,813 - MMP_RS04385 0.24 -2.2 836,813 - MMP_RS04385 0.24 +1.2 836,813 - MMP_RS04385 0.24 +0.5 836,813 - MMP_RS04385 0.24 -2.0 836,814 + MMP_RS04385 0.25 +0.7 836,845 - MMP_RS04385 0.32 -0.5 836,845 - MMP_RS04385 0.32 +2.1 836,845 - MMP_RS04385 0.32 -0.6 836,850 + MMP_RS04385 0.34 +0.5 836,877 - MMP_RS04385 0.40 +4.0 836,877 - MMP_RS04385 0.40 -0.1 836,891 - MMP_RS04385 0.44 +0.8 836,892 + MMP_RS04385 0.44 +2.2 836,921 + MMP_RS04385 0.51 -1.6 836,930 + MMP_RS04385 0.54 +0.7 836,948 - MMP_RS04385 0.58 +1.8 836,957 + MMP_RS04385 0.60 -0.8 836,961 - MMP_RS04385 0.61 +0.0 836,962 + MMP_RS04385 0.62 +0.3 836,981 - MMP_RS04385 0.66 +0.7 837,017 - MMP_RS04385 0.75 +2.3 837,019 - MMP_RS04385 0.76 -0.3 837,020 + MMP_RS04385 0.76 -1.4 837,031 - MMP_RS04385 0.79 +1.8 837,034 + MMP_RS04385 0.80 +0.8 837,042 - MMP_RS04385 0.82 -0.5 837,042 - MMP_RS04385 0.82 +0.1 837,043 + MMP_RS04385 0.82 +0.8 837,043 + MMP_RS04385 0.82 -1.1 837,044 - +2.5 837,044 - MMP_RS04385 0.82 +1.7 837,044 - MMP_RS04385 0.82 +1.8 837,045 + MMP_RS04385 0.82 +0.1 837,045 + MMP_RS04385 0.82 -0.3 837,048 - MMP_RS04385 0.83 +1.8 837,048 - MMP_RS04385 0.83 +0.0 837,048 - MMP_RS04385 0.83 -3.8 837,079 - +0.7 837,079 - -0.7 837,107 - +0.6 837,121 - -1.4 837,159 - -0.4 837,164 - +2.8 837,164 - -1.6 837,165 + +0.5 837,180 - -0.3 837,180 - -2.0 837,181 + +0.2 837,183 + +1.7 837,183 + +0.3 837,186 - +2.8 837,186 - -0.8 837,186 - -1.9 837,187 + +0.2 837,209 - +0.9 837,210 + -0.2 837,211 - +2.2 837,211 - +1.9 837,212 + +0.5 837,222 - +0.3 837,230 - MMP_RS04390 0.11 +1.1 837,259 - MMP_RS04390 0.23 -0.2 837,259 - MMP_RS04390 0.23 +1.9 837,260 + MMP_RS04390 0.23 +0.0 837,261 - MMP_RS04390 0.24 +1.3 837,262 + MMP_RS04390 0.24 -3.0 837,262 + MMP_RS04390 0.24 -2.2 837,262 + MMP_RS04390 0.24 +0.8 837,262 + MMP_RS04390 0.24 -2.4 837,264 - MMP_RS04390 0.25 +1.5 837,271 + MMP_RS04390 0.28 +1.4 837,287 - MMP_RS04390 0.35 +0.2 837,287 - MMP_RS04390 0.35 -0.4 837,314 - MMP_RS04390 0.46 -0.9 837,315 + MMP_RS04390 0.46 -0.6 837,356 - MMP_RS04390 0.64 -2.2 837,356 - MMP_RS04390 0.64 +0.7 837,356 - MMP_RS04390 0.64 +0.7 837,450 + -3.2 837,500 - -0.6 837,500 - +0.5 837,500 - +0.6 837,502 - -0.4 837,502 - +1.5 837,502 - -0.6 837,503 + +1.3 837,503 + -1.8 837,504 - +0.8 837,504 - -2.3 837,505 + -0.9 837,538 + +2.5 837,560 + -0.4 837,584 - MMP_RS04395 0.11 -0.8 837,584 - MMP_RS04395 0.11 +2.6 837,584 - MMP_RS04395 0.11 -0.2 837,585 + MMP_RS04395 0.11 -0.8 837,585 + MMP_RS04395 0.11 -1.6 837,597 + MMP_RS04395 0.13 -1.0 837,600 - MMP_RS04395 0.13 -0.0 837,631 + MMP_RS04395 0.17 -0.3 837,631 + MMP_RS04395 0.17 -2.8 837,805 + MMP_RS04395 0.41 -1.5 837,861 - MMP_RS04395 0.48 +0.5 837,941 - MMP_RS04395 0.59 -0.0 837,942 - MMP_RS04395 0.59 -0.9 837,971 - MMP_RS04395 0.63 +0.3 837,972 + MMP_RS04395 0.64 -0.6 837,972 + MMP_RS04395 0.64 -1.1 837,973 - MMP_RS04395 0.64 -0.8 837,973 - MMP_RS04395 0.64 +0.3 837,974 + MMP_RS04395 0.64 +1.0 837,986 - MMP_RS04395 0.65 -1.5 837,986 - MMP_RS04395 0.65 +0.2 838,011 - MMP_RS04395 0.69 +0.7 838,012 + MMP_RS04395 0.69 +3.2 838,012 + MMP_RS04395 0.69 -3.2 838,068 + MMP_RS04395 0.77 -2.4 838,070 - MMP_RS04395 0.77 +0.6 838,126 - MMP_RS04395 0.84 +0.3 838,138 + MMP_RS04395 0.86 -0.2 838,142 + MMP_RS04395 0.87 -0.5 838,181 - -0.8 838,182 + -2.8 838,191 + -0.1 838,247 - +1.1 838,247 - +1.5 838,247 - -0.1 838,248 + -3.1 838,248 + -0.4 838,249 - +0.4 838,249 - -0.7 838,250 + +0.6 838,252 - +1.0 838,252 - +2.2 838,252 - +0.5 838,255 - -0.0 838,261 - -1.6 838,261 - -1.2 838,381 - MMP_RS04400 0.28 -0.7 838,430 + MMP_RS04400 0.41 -0.2 838,439 - MMP_RS04400 0.44 -1.9 838,440 + MMP_RS04400 0.44 -0.6 838,440 + MMP_RS04400 0.44 +1.4 838,440 + MMP_RS04400 0.44 -0.4 838,441 - MMP_RS04400 0.45 -0.6 838,441 - MMP_RS04400 0.45 -1.2 838,441 - MMP_RS04400 0.45 -1.5 838,441 - MMP_RS04400 0.45 +0.2 838,510 - MMP_RS04400 0.64 -0.4 838,534 - MMP_RS04400 0.71 -0.3 838,541 - MMP_RS04400 0.73 +0.9 838,541 - MMP_RS04400 0.73 +0.9 838,554 - MMP_RS04400 0.76 -0.9 838,560 + MMP_RS04400 0.78 +0.8 838,572 - MMP_RS04400 0.81 +0.2 838,573 + MMP_RS04400 0.82 +0.3 838,584 - MMP_RS04400 0.85 +3.1 838,609 - +1.1 838,611 - -0.4 838,686 + +0.9 838,689 + +0.4 838,732 + -0.6 838,758 - -1.0 838,846 + +0.8 838,849 - -1.5 838,849 - -0.1 838,849 - -0.0 838,850 + -0.1 838,850 + +2.7 838,852 + +0.3 838,859 - +0.4 838,863 - +1.7 838,867 - +0.1 838,903 + +0.2 838,927 + MMP_RS04405 0.11 -0.3 838,943 + MMP_RS04405 0.17 +0.5 838,990 - MMP_RS04405 0.35 +0.5 838,993 - MMP_RS04405 0.36 +0.3 839,004 + MMP_RS04405 0.40 +0.8 839,016 - MMP_RS04405 0.44 +0.7 839,026 - MMP_RS04405 0.48 +0.8 839,049 - MMP_RS04405 0.57 -0.2 839,050 + MMP_RS04405 0.57 +0.5 839,065 - MMP_RS04405 0.63 -0.7 839,076 + MMP_RS04405 0.67 +0.9 839,138 - MMP_RS04405 0.90 -1.8 839,169 + -0.4 839,174 + +0.8
Or see this region's nucleotide sequence