Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04350

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04345 and MMP_RS04350 are separated by 220 nucleotidesMMP_RS04350 and MMP_RS04355 are separated by 14 nucleotidesMMP_RS04355 and MMP_RS04360 are separated by 130 nucleotidesMMP_RS04360 and MMP_RS04365 are separated by 28 nucleotides MMP_RS04345: MMP_RS04345 - MFS transporter, at 829,722 to 831,026 _RS04345 MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368 _RS04350 MMP_RS04355: MMP_RS04355 - ribonuclease H family protein, at 832,383 to 832,988 _RS04355 MMP_RS04360: MMP_RS04360 - hypothetical protein, at 833,119 to 833,310 _RS04360 MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007 _RS04365 Position (kb) 831 832 833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 830.322 kb on - strand, within MMP_RS04345at 830.323 kb on + strand, within MMP_RS04345at 830.326 kb on + strand, within MMP_RS04345at 830.353 kb on + strand, within MMP_RS04345at 830.461 kb on + strand, within MMP_RS04345at 830.461 kb on + strand, within MMP_RS04345at 830.494 kb on + strand, within MMP_RS04345at 830.507 kb on - strand, within MMP_RS04345at 830.511 kb on - strand, within MMP_RS04345at 830.527 kb on + strand, within MMP_RS04345at 830.527 kb on + strand, within MMP_RS04345at 830.597 kb on - strand, within MMP_RS04345at 830.660 kb on - strand, within MMP_RS04345at 830.662 kb on - strand, within MMP_RS04345at 830.662 kb on - strand, within MMP_RS04345at 830.663 kb on + strand, within MMP_RS04345at 830.663 kb on + strand, within MMP_RS04345at 830.729 kb on - strand, within MMP_RS04345at 830.836 kb on - strand, within MMP_RS04345at 830.862 kb on - strand, within MMP_RS04345at 830.901 kb on + strandat 830.953 kb on - strandat 830.989 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.028 kb on - strandat 831.205 kb on + strandat 831.208 kb on + strandat 831.212 kb on - strandat 831.212 kb on - strandat 831.212 kb on - strandat 831.213 kb on + strandat 831.219 kb on - strandat 831.225 kb on + strandat 831.258 kb on + strandat 831.338 kb on - strandat 831.375 kb on - strand, within MMP_RS04350at 831.376 kb on + strand, within MMP_RS04350at 831.378 kb on + strand, within MMP_RS04350at 831.463 kb on + strand, within MMP_RS04350at 831.463 kb on + strand, within MMP_RS04350at 831.477 kb on - strand, within MMP_RS04350at 831.607 kb on - strand, within MMP_RS04350at 831.686 kb on + strand, within MMP_RS04350at 831.789 kb on + strand, within MMP_RS04350at 831.871 kb on + strand, within MMP_RS04350at 831.893 kb on - strand, within MMP_RS04350at 831.894 kb on + strand, within MMP_RS04350at 831.894 kb on + strand, within MMP_RS04350at 831.934 kb on - strand, within MMP_RS04350at 832.045 kb on + strand, within MMP_RS04350at 832.071 kb on + strand, within MMP_RS04350at 832.175 kb on - strand, within MMP_RS04350at 832.204 kb on - strand, within MMP_RS04350at 832.208 kb on + strand, within MMP_RS04350at 832.214 kb on - strand, within MMP_RS04350at 832.214 kb on - strand, within MMP_RS04350at 832.220 kb on + strand, within MMP_RS04350at 832.234 kb on + strand, within MMP_RS04350at 832.290 kb on - strandat 832.291 kb on + strandat 832.367 kb on + strandat 832.386 kb on - strandat 832.424 kb on - strandat 832.466 kb on - strand, within MMP_RS04355at 832.483 kb on - strand, within MMP_RS04355at 832.484 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.503 kb on + strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.509 kb on - strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.511 kb on - strand, within MMP_RS04355at 832.544 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.577 kb on + strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.695 kb on + strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.938 kb on + strandat 832.940 kb on - strandat 832.945 kb on + strandat 832.945 kb on + strandat 832.975 kb on - strandat 832.975 kb on - strandat 832.977 kb on - strandat 832.977 kb on - strandat 832.978 kb on + strandat 832.983 kb on + strandat 833.004 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.019 kb on + strandat 833.020 kb on - strandat 833.021 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.027 kb on + strandat 833.055 kb on + strandat 833.103 kb on + strandat 833.178 kb on + strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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830,322 - MMP_RS04345 0.46 +0.2
830,323 + MMP_RS04345 0.46 +1.4
830,326 + MMP_RS04345 0.46 -0.2
830,353 + MMP_RS04345 0.48 +0.5
830,461 + MMP_RS04345 0.57 +0.6
830,461 + MMP_RS04345 0.57 -0.8
830,494 + MMP_RS04345 0.59 -0.1
830,507 - MMP_RS04345 0.60 +0.6
830,511 - MMP_RS04345 0.60 -0.6
830,527 + MMP_RS04345 0.62 -2.8
830,527 + MMP_RS04345 0.62 +1.0
830,597 - MMP_RS04345 0.67 -0.5
830,660 - MMP_RS04345 0.72 -2.0
830,662 - MMP_RS04345 0.72 +0.8
830,662 - MMP_RS04345 0.72 +0.4
830,663 + MMP_RS04345 0.72 +0.1
830,663 + MMP_RS04345 0.72 -0.5
830,729 - MMP_RS04345 0.77 -0.3
830,836 - MMP_RS04345 0.85 -1.2
830,862 - MMP_RS04345 0.87 -2.2
830,901 + -0.1
830,953 - +3.1
830,989 - +1.3
831,028 - -2.3
831,028 - +1.7
831,028 - -3.0
831,028 - +0.1
831,028 - +0.6
831,205 + +0.5
831,208 + -0.9
831,212 - +2.0
831,212 - -0.2
831,212 - +0.9
831,213 + -0.1
831,219 - +1.5
831,225 + +1.0
831,258 + -3.4
831,338 - +0.3
831,375 - MMP_RS04350 0.11 +0.8
831,376 + MMP_RS04350 0.11 -0.6
831,378 + MMP_RS04350 0.12 -2.1
831,463 + MMP_RS04350 0.19 +0.9
831,463 + MMP_RS04350 0.19 -1.8
831,477 - MMP_RS04350 0.20 +0.4
831,607 - MMP_RS04350 0.32 -1.7
831,686 + MMP_RS04350 0.39 +0.3
831,789 + MMP_RS04350 0.48 -0.1
831,871 + MMP_RS04350 0.56 -1.8
831,893 - MMP_RS04350 0.58 +0.9
831,894 + MMP_RS04350 0.58 -4.2
831,894 + MMP_RS04350 0.58 +1.6
831,934 - MMP_RS04350 0.61 -1.4
832,045 + MMP_RS04350 0.71 -0.3
832,071 + MMP_RS04350 0.73 +0.5
832,175 - MMP_RS04350 0.83 -0.8
832,204 - MMP_RS04350 0.85 -1.9
832,208 + MMP_RS04350 0.86 -0.1
832,214 - MMP_RS04350 0.86 +2.1
832,214 - MMP_RS04350 0.86 -1.1
832,220 + MMP_RS04350 0.87 -1.5
832,234 + MMP_RS04350 0.88 +0.3
832,290 - +0.4
832,291 + -1.9
832,367 + +0.9
832,386 - -0.7
832,424 - -1.1
832,466 - MMP_RS04355 0.14 +1.1
832,483 - MMP_RS04355 0.17 +0.3
832,484 + MMP_RS04355 0.17 -1.2
832,489 + MMP_RS04355 0.17 +1.3
832,489 + MMP_RS04355 0.17 -0.9
832,501 + MMP_RS04355 0.19 -0.9
832,501 + MMP_RS04355 0.19 -2.5
832,503 + MMP_RS04355 0.20 +1.4
832,504 - MMP_RS04355 0.20 +0.1
832,504 - MMP_RS04355 0.20 -0.9
832,504 - MMP_RS04355 0.20 +0.9
832,505 + MMP_RS04355 0.20 -2.1
832,505 + MMP_RS04355 0.20 +1.6
832,509 - MMP_RS04355 0.21 +0.9
832,510 + MMP_RS04355 0.21 +2.2
832,510 + MMP_RS04355 0.21 +0.3
832,511 - MMP_RS04355 0.21 -0.9
832,544 - MMP_RS04355 0.27 -0.6
832,567 - MMP_RS04355 0.30 +2.1
832,567 - MMP_RS04355 0.30 +2.3
832,568 + MMP_RS04355 0.31 +0.2
832,568 + MMP_RS04355 0.31 +1.1
832,576 - MMP_RS04355 0.32 +0.5
832,576 - MMP_RS04355 0.32 -0.7
832,576 - MMP_RS04355 0.32 +1.7
832,576 - MMP_RS04355 0.32 +1.6
832,577 + MMP_RS04355 0.32 -0.1
832,578 - MMP_RS04355 0.32 -0.6
832,578 - MMP_RS04355 0.32 +0.0
832,578 - MMP_RS04355 0.32 +0.2
832,578 - MMP_RS04355 0.32 -0.4
832,695 + MMP_RS04355 0.51 +0.1
832,788 - MMP_RS04355 0.67 -1.2
832,788 - MMP_RS04355 0.67 +1.7
832,938 + -0.2
832,940 - +0.3
832,945 + +0.4
832,945 + +1.2
832,975 - -1.3
832,975 - -0.7
832,977 - +0.0
832,977 - +1.3
832,978 + +1.3
832,983 + -2.2
833,004 - -1.6
833,018 - +0.2
833,018 - -2.3
833,018 - -1.5
833,018 - -2.7
833,019 + -0.3
833,020 - +1.3
833,021 + -0.4
833,023 + +1.2
833,023 + +0.5
833,023 + +1.0
833,027 + +0.4
833,055 + -0.5
833,103 + -0.2
833,178 + MMP_RS04360 0.31 -0.4
833,216 - MMP_RS04360 0.51 +1.7
833,216 - MMP_RS04360 0.51 +0.2
833,308 - +0.8

Or see this region's nucleotide sequence