Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04335

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04330 and MMP_RS04335 are separated by 51 nucleotidesMMP_RS04335 and MMP_RS04340 are separated by 5 nucleotidesMMP_RS04340 and MMP_RS04345 are separated by 68 nucleotides MMP_RS04330: MMP_RS04330 - ASKHA domain-containing protein, at 826,046 to 827,824 _RS04330 MMP_RS04335: MMP_RS04335 - GTP-binding protein, at 827,876 to 828,784 _RS04335 MMP_RS04340: MMP_RS04340 - uroporphyrinogen decarboxylase, at 828,790 to 829,653 _RS04340 MMP_RS04345: MMP_RS04345 - MFS transporter, at 829,722 to 831,026 _RS04345 Position (kb) 827 828 829Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 826.926 kb on + strand, within MMP_RS04330at 826.971 kb on - strand, within MMP_RS04330at 826.981 kb on - strand, within MMP_RS04330at 826.982 kb on + strand, within MMP_RS04330at 827.030 kb on + strand, within MMP_RS04330at 827.030 kb on + strand, within MMP_RS04330at 827.058 kb on - strand, within MMP_RS04330at 827.058 kb on - strand, within MMP_RS04330at 827.058 kb on - strand, within MMP_RS04330at 827.059 kb on + strand, within MMP_RS04330at 827.124 kb on - strand, within MMP_RS04330at 827.125 kb on + strand, within MMP_RS04330at 827.197 kb on + strand, within MMP_RS04330at 827.229 kb on - strand, within MMP_RS04330at 827.230 kb on + strand, within MMP_RS04330at 827.265 kb on - strand, within MMP_RS04330at 827.357 kb on + strand, within MMP_RS04330at 827.371 kb on + strand, within MMP_RS04330at 827.401 kb on - strand, within MMP_RS04330at 827.409 kb on - strand, within MMP_RS04330at 827.466 kb on - strand, within MMP_RS04330at 827.484 kb on - strand, within MMP_RS04330at 827.484 kb on - strand, within MMP_RS04330at 827.485 kb on + strand, within MMP_RS04330at 827.485 kb on + strand, within MMP_RS04330at 827.494 kb on + strand, within MMP_RS04330at 827.515 kb on + strand, within MMP_RS04330at 827.669 kb on - strandat 827.669 kb on - strandat 827.670 kb on + strandat 827.671 kb on - strandat 827.757 kb on - strandat 827.758 kb on + strandat 827.762 kb on - strandat 827.762 kb on - strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.763 kb on + strandat 827.766 kb on + strandat 827.789 kb on - strandat 827.800 kb on + strandat 827.830 kb on + strandat 827.833 kb on + strandat 827.841 kb on - strandat 827.844 kb on - strandat 827.851 kb on + strandat 827.862 kb on - strandat 827.873 kb on + strandat 827.895 kb on - strandat 827.896 kb on + strandat 827.929 kb on - strandat 827.930 kb on + strandat 827.931 kb on - strandat 828.077 kb on + strand, within MMP_RS04335at 828.174 kb on - strand, within MMP_RS04335at 828.229 kb on - strand, within MMP_RS04335at 828.230 kb on + strand, within MMP_RS04335at 828.240 kb on - strand, within MMP_RS04335at 828.240 kb on - strand, within MMP_RS04335at 828.394 kb on - strand, within MMP_RS04335at 828.408 kb on - strand, within MMP_RS04335at 828.409 kb on + strand, within MMP_RS04335at 828.427 kb on - strand, within MMP_RS04335at 828.486 kb on - strand, within MMP_RS04335at 828.486 kb on - strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.487 kb on + strand, within MMP_RS04335at 828.489 kb on + strand, within MMP_RS04335at 828.530 kb on + strand, within MMP_RS04335at 828.616 kb on + strand, within MMP_RS04335at 828.665 kb on + strand, within MMP_RS04335at 828.665 kb on + strand, within MMP_RS04335at 828.668 kb on - strand, within MMP_RS04335at 828.760 kb on + strandat 829.058 kb on - strand, within MMP_RS04340at 829.059 kb on + strand, within MMP_RS04340at 829.065 kb on - strand, within MMP_RS04340at 829.066 kb on + strand, within MMP_RS04340at 829.082 kb on + strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.084 kb on - strand, within MMP_RS04340at 829.085 kb on + strand, within MMP_RS04340at 829.085 kb on + strand, within MMP_RS04340at 829.092 kb on - strand, within MMP_RS04340at 829.154 kb on - strand, within MMP_RS04340at 829.154 kb on - strand, within MMP_RS04340at 829.154 kb on - strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.155 kb on + strand, within MMP_RS04340at 829.320 kb on - strand, within MMP_RS04340at 829.545 kb on - strand, within MMP_RS04340at 829.545 kb on - strand, within MMP_RS04340at 829.546 kb on + strand, within MMP_RS04340at 829.549 kb on - strand, within MMP_RS04340at 829.550 kb on + strand, within MMP_RS04340at 829.550 kb on + strand, within MMP_RS04340at 829.669 kb on - strandat 829.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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826,926 + MMP_RS04330 0.49 +1.1
826,971 - MMP_RS04330 0.52 -0.1
826,981 - MMP_RS04330 0.53 +0.6
826,982 + MMP_RS04330 0.53 +0.2
827,030 + MMP_RS04330 0.55 -1.4
827,030 + MMP_RS04330 0.55 -0.4
827,058 - MMP_RS04330 0.57 +0.4
827,058 - MMP_RS04330 0.57 -1.7
827,058 - MMP_RS04330 0.57 -0.5
827,059 + MMP_RS04330 0.57 +0.7
827,124 - MMP_RS04330 0.61 -0.1
827,125 + MMP_RS04330 0.61 +0.5
827,197 + MMP_RS04330 0.65 +0.2
827,229 - MMP_RS04330 0.66 -0.5
827,230 + MMP_RS04330 0.67 -0.1
827,265 - MMP_RS04330 0.69 +0.6
827,357 + MMP_RS04330 0.74 +0.8
827,371 + MMP_RS04330 0.74 +1.0
827,401 - MMP_RS04330 0.76 -1.4
827,409 - MMP_RS04330 0.77 +1.7
827,466 - MMP_RS04330 0.80 -2.1
827,484 - MMP_RS04330 0.81 +0.3
827,484 - MMP_RS04330 0.81 -2.5
827,485 + MMP_RS04330 0.81 +0.5
827,485 + MMP_RS04330 0.81 +1.0
827,494 + MMP_RS04330 0.81 -1.1
827,515 + MMP_RS04330 0.83 -1.6
827,669 - +0.9
827,669 - +1.9
827,670 + -0.5
827,671 - +0.9
827,757 - +0.2
827,758 + +0.2
827,762 - -1.9
827,762 - -0.8
827,763 + +0.4
827,763 + -1.9
827,763 + -0.3
827,763 + +1.2
827,763 + -0.6
827,763 + +1.0
827,766 + +0.0
827,789 - +0.0
827,800 + +1.6
827,830 + -0.7
827,833 + +0.5
827,841 - +1.8
827,844 - -4.0
827,851 + -1.6
827,862 - +0.5
827,873 + +0.4
827,895 - -1.4
827,896 + +0.1
827,929 - +0.6
827,930 + +2.8
827,931 - -1.1
828,077 + MMP_RS04335 0.22 +0.8
828,174 - MMP_RS04335 0.33 +2.2
828,229 - MMP_RS04335 0.39 -0.0
828,230 + MMP_RS04335 0.39 -1.5
828,240 - MMP_RS04335 0.40 -2.8
828,240 - MMP_RS04335 0.40 +0.8
828,394 - MMP_RS04335 0.57 -0.4
828,408 - MMP_RS04335 0.59 +1.9
828,409 + MMP_RS04335 0.59 -1.2
828,427 - MMP_RS04335 0.61 +1.3
828,486 - MMP_RS04335 0.67 +1.7
828,486 - MMP_RS04335 0.67 +0.6
828,487 + MMP_RS04335 0.67 +0.5
828,487 + MMP_RS04335 0.67 +0.8
828,487 + MMP_RS04335 0.67 +0.1
828,487 + MMP_RS04335 0.67 +0.7
828,489 + MMP_RS04335 0.67 +1.9
828,530 + MMP_RS04335 0.72 +0.1
828,616 + MMP_RS04335 0.81 +0.5
828,665 + MMP_RS04335 0.87 +1.8
828,665 + MMP_RS04335 0.87 -0.7
828,668 - MMP_RS04335 0.87 +1.6
828,760 + -2.0
829,058 - MMP_RS04340 0.31 +1.6
829,059 + MMP_RS04340 0.31 +1.9
829,065 - MMP_RS04340 0.32 -1.0
829,066 + MMP_RS04340 0.32 +0.9
829,082 + MMP_RS04340 0.34 -0.1
829,084 - MMP_RS04340 0.34 +1.2
829,084 - MMP_RS04340 0.34 -1.3
829,084 - MMP_RS04340 0.34 -0.2
829,084 - MMP_RS04340 0.34 +1.6
829,084 - MMP_RS04340 0.34 -0.9
829,085 + MMP_RS04340 0.34 +2.3
829,085 + MMP_RS04340 0.34 +0.5
829,092 - MMP_RS04340 0.35 +0.5
829,154 - MMP_RS04340 0.42 -1.4
829,154 - MMP_RS04340 0.42 +0.2
829,154 - MMP_RS04340 0.42 +0.9
829,155 + MMP_RS04340 0.42 +1.0
829,155 + MMP_RS04340 0.42 +1.6
829,155 + MMP_RS04340 0.42 +0.6
829,155 + MMP_RS04340 0.42 +1.7
829,320 - MMP_RS04340 0.61 -0.1
829,545 - MMP_RS04340 0.87 -0.8
829,545 - MMP_RS04340 0.87 -0.7
829,546 + MMP_RS04340 0.88 -1.2
829,549 - MMP_RS04340 0.88 -0.4
829,550 + MMP_RS04340 0.88 -1.8
829,550 + MMP_RS04340 0.88 +0.7
829,669 - +2.4
829,724 + +1.1

Or see this region's nucleotide sequence