Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04295 and MMP_RS04300 are separated by 260 nucleotides MMP_RS04300 and MMP_RS04305 are separated by 281 nucleotides MMP_RS04305 and MMP_RS04310 are separated by 14 nucleotides MMP_RS04310 and MMP_RS04315 are separated by 268 nucleotides
MMP_RS04295: MMP_RS04295 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 819,424 to 821,388
_RS04295
MMP_RS04300: MMP_RS04300 - hypothetical protein, at 821,649 to 821,915
_RS04300
MMP_RS04305: MMP_RS04305 - hypothetical protein, at 822,197 to 822,490
_RS04305
MMP_RS04310: MMP_RS04310 - hypothetical protein, at 822,505 to 822,849
_RS04310
MMP_RS04315: MMP_RS04315 - corrinoid protein, at 823,118 to 823,777
_RS04315
Position (kb) 822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 821.210 kb on + strand at 821.348 kb on - strand at 821.348 kb on - strand at 821.350 kb on - strand at 821.428 kb on + strand at 821.497 kb on - strand at 821.545 kb on + strand at 821.549 kb on + strand at 821.561 kb on + strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.567 kb on + strand at 821.567 kb on + strand at 821.567 kb on + strand at 821.596 kb on - strand at 821.596 kb on - strand at 821.596 kb on - strand at 821.597 kb on + strand at 821.597 kb on + strand at 821.597 kb on + strand at 821.615 kb on + strand at 821.668 kb on + strand at 821.668 kb on + strand at 821.668 kb on + strand at 821.685 kb on - strand, within MMP_RS04300 at 821.686 kb on + strand, within MMP_RS04300 at 821.706 kb on - strand, within MMP_RS04300 at 821.706 kb on - strand, within MMP_RS04300 at 821.718 kb on + strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.735 kb on + strand, within MMP_RS04300 at 821.735 kb on + strand, within MMP_RS04300 at 821.742 kb on + strand, within MMP_RS04300 at 821.746 kb on - strand, within MMP_RS04300 at 821.761 kb on + strand, within MMP_RS04300 at 821.778 kb on + strand, within MMP_RS04300 at 821.853 kb on - strand, within MMP_RS04300 at 821.897 kb on - strand at 821.904 kb on + strand at 821.930 kb on - strand at 821.998 kb on + strand at 821.999 kb on - strand at 821.999 kb on - strand at 821.999 kb on - strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.003 kb on - strand at 822.008 kb on - strand at 822.012 kb on - strand at 822.012 kb on - strand at 822.012 kb on - strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.032 kb on + strand at 822.040 kb on - strand at 822.044 kb on + strand at 822.125 kb on - strand at 822.125 kb on - strand at 822.126 kb on + strand at 822.126 kb on + strand at 822.127 kb on - strand at 822.127 kb on - strand at 822.128 kb on + strand at 822.128 kb on + strand at 822.132 kb on + strand at 822.147 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.157 kb on + strand at 822.157 kb on + strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.159 kb on + strand at 822.159 kb on + strand at 822.175 kb on - strand at 822.178 kb on - strand at 822.179 kb on + strand at 822.209 kb on + strand at 822.235 kb on - strand, within MMP_RS04305 at 822.384 kb on - strand, within MMP_RS04305 at 822.489 kb on + strand at 822.514 kb on - strand at 822.522 kb on - strand at 822.708 kb on - strand, within MMP_RS04310 at 822.722 kb on - strand, within MMP_RS04310 at 822.770 kb on + strand, within MMP_RS04310 at 822.770 kb on + strand, within MMP_RS04310 at 822.861 kb on + strand at 822.861 kb on + strand at 822.865 kb on + strand at 822.865 kb on + strand at 822.869 kb on - strand at 822.870 kb on + strand at 822.870 kb on + strand at 822.875 kb on + strand at 822.886 kb on - strand at 822.896 kb on - strand at 822.896 kb on - strand at 822.897 kb on + strand at 822.897 kb on + strand at 822.899 kb on - strand at 822.900 kb on + strand at 822.900 kb on + strand at 822.900 kb on + strand at 822.902 kb on + strand at 822.902 kb on + strand at 822.902 kb on + strand at 822.907 kb on - strand at 822.907 kb on - strand at 822.953 kb on - strand at 822.970 kb on - strand at 822.971 kb on + strand at 822.973 kb on + strand at 822.978 kb on + strand at 822.983 kb on + strand at 822.985 kb on - strand at 823.141 kb on + strand at 823.143 kb on - strand at 823.265 kb on + strand, within MMP_RS04315 at 823.286 kb on - strand, within MMP_RS04315 at 823.318 kb on + strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.360 kb on + strand, within MMP_RS04315 at 823.371 kb on - strand, within MMP_RS04315
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 821,210 + +1.3 821,348 - +1.6 821,348 - +0.3 821,350 - +0.6 821,428 + -0.3 821,497 - -2.9 821,545 + +2.6 821,549 + +2.3 821,561 + +0.2 821,564 - -1.0 821,564 - -1.7 821,564 - -0.6 821,564 - +1.1 821,565 + +0.5 821,565 + -2.8 821,565 + +0.6 821,565 + +2.0 821,565 + -1.7 821,565 + -0.0 821,566 - +1.4 821,566 - -0.2 821,566 - -1.6 821,566 - -1.2 821,567 + -0.8 821,567 + -0.8 821,567 + +0.2 821,596 - +2.6 821,596 - -0.1 821,596 - +0.4 821,597 + +1.1 821,597 + -0.4 821,597 + -2.2 821,615 + +2.4 821,668 + +0.3 821,668 + +0.2 821,668 + +3.2 821,685 - MMP_RS04300 0.13 +0.5 821,686 + MMP_RS04300 0.14 +1.3 821,706 - MMP_RS04300 0.21 -2.5 821,706 - MMP_RS04300 0.21 -0.1 821,718 + MMP_RS04300 0.26 +1.9 821,734 - MMP_RS04300 0.32 -1.1 821,734 - MMP_RS04300 0.32 -0.6 821,734 - MMP_RS04300 0.32 -1.1 821,735 + MMP_RS04300 0.32 +1.0 821,735 + MMP_RS04300 0.32 -0.3 821,742 + MMP_RS04300 0.35 -1.4 821,746 - MMP_RS04300 0.36 +0.4 821,761 + MMP_RS04300 0.42 -1.7 821,778 + MMP_RS04300 0.48 -0.5 821,853 - MMP_RS04300 0.76 -0.3 821,897 - +1.1 821,904 + +1.6 821,930 - +0.8 821,998 + -0.5 821,999 - -0.3 821,999 - +1.8 821,999 - +0.2 822,000 + +1.2 822,000 + -3.4 822,000 + -1.0 822,000 + -0.7 822,000 + -1.0 822,001 - +0.9 822,001 - -0.8 822,001 - -1.7 822,001 - +1.1 822,001 - -0.8 822,001 - -1.2 822,001 - +2.1 822,002 + +1.2 822,002 + +1.1 822,002 + -0.4 822,002 + +0.2 822,002 + +0.2 822,003 - -0.4 822,008 - +1.2 822,012 - -1.5 822,012 - +0.2 822,012 - -0.7 822,013 + -0.8 822,013 + -0.2 822,013 + +0.5 822,013 + +1.5 822,013 + +0.5 822,032 + +0.7 822,040 - +0.1 822,044 + +1.5 822,125 - -0.8 822,125 - +1.5 822,126 + +3.4 822,126 + +0.9 822,127 - +0.5 822,127 - -2.6 822,128 + +1.9 822,128 + -0.3 822,132 + +1.2 822,147 - +0.7 822,156 - -0.1 822,156 - -0.2 822,156 - -0.6 822,156 - -0.2 822,156 - -1.4 822,156 - +0.4 822,157 + +1.0 822,157 + -0.0 822,158 - -1.0 822,158 - +1.1 822,158 - -2.3 822,158 - -0.1 822,158 - +0.6 822,159 + -0.1 822,159 + +1.4 822,175 - -0.9 822,178 - -1.3 822,179 + -1.4 822,209 + -1.9 822,235 - MMP_RS04305 0.13 -1.0 822,384 - MMP_RS04305 0.64 -0.6 822,489 + -0.6 822,514 - +1.5 822,522 - +1.2 822,708 - MMP_RS04310 0.59 +0.2 822,722 - MMP_RS04310 0.63 +0.6 822,770 + MMP_RS04310 0.77 +1.7 822,770 + MMP_RS04310 0.77 +0.1 822,861 + +1.1 822,861 + +1.3 822,865 + -0.6 822,865 + +0.2 822,869 - +1.9 822,870 + +0.1 822,870 + -1.1 822,875 + -1.0 822,886 - +2.6 822,896 - +0.7 822,896 - -1.8 822,897 + -0.3 822,897 + +0.3 822,899 - +1.9 822,900 + -0.2 822,900 + -0.6 822,900 + +1.0 822,902 + +1.1 822,902 + +2.3 822,902 + -1.1 822,907 - -0.3 822,907 - +0.9 822,953 - -0.3 822,970 - +2.9 822,971 + +0.2 822,973 + +0.8 822,978 + -0.0 822,983 + +1.2 822,985 - -0.2 823,141 + +0.6 823,143 - +0.3 823,265 + MMP_RS04315 0.22 -1.5 823,286 - MMP_RS04315 0.25 -0.2 823,318 + MMP_RS04315 0.30 +1.1 823,340 - MMP_RS04315 0.34 -0.1 823,340 - MMP_RS04315 0.34 +0.7 823,340 - MMP_RS04315 0.34 -0.9 823,340 - MMP_RS04315 0.34 +0.4 823,341 + MMP_RS04315 0.34 +4.4 823,341 + MMP_RS04315 0.34 -0.9 823,341 + MMP_RS04315 0.34 -0.0 823,341 + MMP_RS04315 0.34 -0.7 823,360 + MMP_RS04315 0.37 -1.9 823,371 - MMP_RS04315 0.38 +1.1
Or see this region's nucleotide sequence