Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04000 and MMP_RS04005 are separated by 11 nucleotides MMP_RS04005 and MMP_RS04010 are separated by 360 nucleotides
MMP_RS04000: MMP_RS04000 - NAD(P)/FAD-dependent oxidoreductase, at 758,130 to 759,548
_RS04000
MMP_RS04005: MMP_RS04005 - hypothetical protein, at 759,560 to 761,332
_RS04005
MMP_RS04010: MMP_RS04010 - ABC transporter substrate-binding protein, at 761,693 to 762,445
_RS04010
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 758.575 kb on + strand, within MMP_RS04000 at 758.614 kb on - strand, within MMP_RS04000 at 758.614 kb on - strand, within MMP_RS04000 at 758.614 kb on - strand, within MMP_RS04000 at 758.615 kb on + strand, within MMP_RS04000 at 758.641 kb on + strand, within MMP_RS04000 at 758.646 kb on + strand, within MMP_RS04000 at 758.646 kb on + strand, within MMP_RS04000 at 758.655 kb on - strand, within MMP_RS04000 at 758.828 kb on - strand, within MMP_RS04000 at 758.829 kb on + strand, within MMP_RS04000 at 758.835 kb on + strand, within MMP_RS04000 at 758.841 kb on - strand, within MMP_RS04000 at 758.844 kb on + strand, within MMP_RS04000 at 758.903 kb on + strand, within MMP_RS04000 at 759.082 kb on - strand, within MMP_RS04000 at 759.083 kb on + strand, within MMP_RS04000 at 759.083 kb on + strand, within MMP_RS04000 at 759.103 kb on - strand, within MMP_RS04000 at 759.103 kb on - strand, within MMP_RS04000 at 759.126 kb on + strand, within MMP_RS04000 at 759.147 kb on - strand, within MMP_RS04000 at 759.178 kb on + strand, within MMP_RS04000 at 759.179 kb on - strand, within MMP_RS04000 at 759.237 kb on - strand, within MMP_RS04000 at 759.238 kb on + strand, within MMP_RS04000 at 759.272 kb on + strand, within MMP_RS04000 at 759.274 kb on - strand, within MMP_RS04000 at 759.274 kb on - strand, within MMP_RS04000 at 759.275 kb on + strand, within MMP_RS04000 at 759.276 kb on - strand, within MMP_RS04000 at 759.277 kb on + strand, within MMP_RS04000 at 759.277 kb on + strand, within MMP_RS04000 at 759.316 kb on + strand, within MMP_RS04000 at 759.340 kb on + strand, within MMP_RS04000 at 759.349 kb on + strand, within MMP_RS04000 at 759.417 kb on + strand at 759.447 kb on - strand at 759.458 kb on + strand at 759.485 kb on - strand at 759.490 kb on + strand at 759.568 kb on - strand at 759.573 kb on + strand at 759.701 kb on - strand at 759.840 kb on + strand, within MMP_RS04005 at 759.841 kb on - strand, within MMP_RS04005 at 759.841 kb on - strand, within MMP_RS04005 at 759.860 kb on + strand, within MMP_RS04005 at 759.882 kb on - strand, within MMP_RS04005 at 759.887 kb on + strand, within MMP_RS04005 at 759.933 kb on - strand, within MMP_RS04005 at 759.974 kb on - strand, within MMP_RS04005 at 759.974 kb on - strand, within MMP_RS04005 at 759.974 kb on - strand, within MMP_RS04005 at 759.975 kb on + strand, within MMP_RS04005 at 759.975 kb on + strand, within MMP_RS04005 at 759.975 kb on + strand, within MMP_RS04005 at 760.013 kb on + strand, within MMP_RS04005 at 760.015 kb on - strand, within MMP_RS04005 at 760.015 kb on - strand, within MMP_RS04005 at 760.058 kb on - strand, within MMP_RS04005 at 760.058 kb on - strand, within MMP_RS04005 at 760.058 kb on - strand, within MMP_RS04005 at 760.059 kb on + strand, within MMP_RS04005 at 760.066 kb on - strand, within MMP_RS04005 at 760.066 kb on - strand, within MMP_RS04005 at 760.068 kb on - strand, within MMP_RS04005 at 760.170 kb on + strand, within MMP_RS04005 at 760.210 kb on + strand, within MMP_RS04005 at 760.231 kb on + strand, within MMP_RS04005 at 760.323 kb on + strand, within MMP_RS04005 at 760.330 kb on - strand, within MMP_RS04005 at 760.331 kb on + strand, within MMP_RS04005 at 760.384 kb on - strand, within MMP_RS04005 at 760.417 kb on - strand, within MMP_RS04005 at 760.418 kb on + strand, within MMP_RS04005 at 760.435 kb on + strand, within MMP_RS04005 at 760.435 kb on + strand, within MMP_RS04005 at 760.485 kb on - strand, within MMP_RS04005 at 760.486 kb on + strand, within MMP_RS04005 at 760.486 kb on + strand, within MMP_RS04005 at 760.577 kb on - strand, within MMP_RS04005 at 760.577 kb on - strand, within MMP_RS04005 at 760.630 kb on + strand, within MMP_RS04005 at 760.634 kb on - strand, within MMP_RS04005 at 760.653 kb on - strand, within MMP_RS04005 at 760.690 kb on - strand, within MMP_RS04005 at 760.710 kb on - strand, within MMP_RS04005 at 760.711 kb on + strand, within MMP_RS04005 at 760.714 kb on - strand, within MMP_RS04005 at 760.715 kb on + strand, within MMP_RS04005 at 760.721 kb on - strand, within MMP_RS04005 at 760.746 kb on - strand, within MMP_RS04005 at 760.757 kb on - strand, within MMP_RS04005 at 760.819 kb on + strand, within MMP_RS04005 at 760.819 kb on + strand, within MMP_RS04005 at 760.870 kb on + strand, within MMP_RS04005 at 760.889 kb on + strand, within MMP_RS04005 at 760.893 kb on + strand, within MMP_RS04005 at 760.992 kb on + strand, within MMP_RS04005 at 761.051 kb on - strand, within MMP_RS04005 at 761.147 kb on - strand, within MMP_RS04005 at 761.147 kb on - strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.168 kb on - strand at 761.195 kb on + strand at 761.235 kb on + strand at 761.235 kb on + strand at 761.238 kb on + strand at 761.244 kb on - strand at 761.257 kb on + strand at 761.321 kb on - strand at 761.322 kb on + strand at 761.355 kb on - strand at 761.355 kb on - strand at 761.355 kb on - strand at 761.356 kb on + strand at 761.356 kb on + strand at 761.419 kb on - strand at 761.419 kb on - strand at 761.420 kb on + strand at 761.442 kb on - strand at 761.443 kb on + strand at 761.479 kb on - strand at 761.483 kb on - strand at 761.520 kb on - strand at 761.520 kb on - strand at 761.520 kb on - strand at 761.521 kb on + strand at 761.522 kb on - strand at 761.522 kb on - strand at 761.523 kb on + strand at 761.523 kb on + strand at 761.537 kb on + strand at 761.540 kb on + strand at 761.552 kb on - strand at 761.560 kb on - strand at 761.561 kb on + strand at 761.562 kb on - strand at 761.562 kb on - strand at 761.562 kb on - strand at 761.563 kb on + strand at 761.563 kb on + strand at 761.591 kb on - strand at 761.593 kb on - strand at 761.593 kb on - strand at 761.594 kb on + strand at 761.600 kb on + strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.605 kb on - strand at 761.605 kb on - strand at 761.606 kb on + strand at 761.606 kb on + strand at 761.632 kb on - strand at 761.633 kb on + strand at 761.633 kb on + strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.643 kb on + strand at 761.643 kb on + strand at 761.644 kb on - strand at 761.644 kb on - strand at 761.645 kb on + strand at 761.645 kb on + strand at 761.646 kb on - strand at 761.689 kb on - strand at 761.690 kb on + strand at 761.803 kb on - strand, within MMP_RS04010 at 761.803 kb on - strand, within MMP_RS04010 at 761.812 kb on + strand, within MMP_RS04010 at 761.826 kb on + strand, within MMP_RS04010 at 761.828 kb on + strand, within MMP_RS04010 at 761.860 kb on + strand, within MMP_RS04010 at 761.860 kb on + strand, within MMP_RS04010 at 761.865 kb on - strand, within MMP_RS04010 at 761.866 kb on + strand, within MMP_RS04010 at 761.868 kb on - strand, within MMP_RS04010 at 761.869 kb on + strand, within MMP_RS04010 at 761.871 kb on + strand, within MMP_RS04010 at 761.895 kb on - strand, within MMP_RS04010 at 761.896 kb on + strand, within MMP_RS04010 at 761.913 kb on - strand, within MMP_RS04010 at 761.913 kb on - strand, within MMP_RS04010 at 761.970 kb on - strand, within MMP_RS04010 at 761.975 kb on - strand, within MMP_RS04010 at 761.976 kb on + strand, within MMP_RS04010 at 762.034 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.048 kb on - strand, within MMP_RS04010 at 762.068 kb on + strand, within MMP_RS04010 at 762.216 kb on - strand, within MMP_RS04010 at 762.250 kb on - strand, within MMP_RS04010 at 762.251 kb on + strand, within MMP_RS04010 at 762.253 kb on - strand, within MMP_RS04010 at 762.254 kb on + strand, within MMP_RS04010 at 762.263 kb on - strand, within MMP_RS04010 at 762.267 kb on - strand, within MMP_RS04010 at 762.268 kb on + strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 758,575 + MMP_RS04000 0.31 +1.8 758,614 - MMP_RS04000 0.34 -1.6 758,614 - MMP_RS04000 0.34 -0.3 758,614 - MMP_RS04000 0.34 -0.2 758,615 + MMP_RS04000 0.34 +0.3 758,641 + MMP_RS04000 0.36 +0.7 758,646 + MMP_RS04000 0.36 +0.3 758,646 + MMP_RS04000 0.36 -0.7 758,655 - MMP_RS04000 0.37 -0.8 758,828 - MMP_RS04000 0.49 +0.4 758,829 + MMP_RS04000 0.49 +0.5 758,835 + MMP_RS04000 0.50 -0.4 758,841 - MMP_RS04000 0.50 +0.7 758,844 + MMP_RS04000 0.50 +0.8 758,903 + MMP_RS04000 0.54 +0.2 759,082 - MMP_RS04000 0.67 -0.1 759,083 + MMP_RS04000 0.67 -0.4 759,083 + MMP_RS04000 0.67 +0.7 759,103 - MMP_RS04000 0.69 -0.3 759,103 - MMP_RS04000 0.69 +0.9 759,126 + MMP_RS04000 0.70 +0.4 759,147 - MMP_RS04000 0.72 -0.6 759,178 + MMP_RS04000 0.74 +0.8 759,179 - MMP_RS04000 0.74 +4.9 759,237 - MMP_RS04000 0.78 +0.5 759,238 + MMP_RS04000 0.78 -1.4 759,272 + MMP_RS04000 0.80 +1.6 759,274 - MMP_RS04000 0.81 -0.0 759,274 - MMP_RS04000 0.81 +1.3 759,275 + MMP_RS04000 0.81 +1.5 759,276 - MMP_RS04000 0.81 -1.2 759,277 + MMP_RS04000 0.81 -1.5 759,277 + MMP_RS04000 0.81 +1.1 759,316 + MMP_RS04000 0.84 +0.0 759,340 + MMP_RS04000 0.85 -1.5 759,349 + MMP_RS04000 0.86 -2.1 759,417 + +2.2 759,447 - -0.1 759,458 + +1.8 759,485 - +0.3 759,490 + -1.2 759,568 - -0.1 759,573 + +0.4 759,701 - -1.3 759,840 + MMP_RS04005 0.16 -1.6 759,841 - MMP_RS04005 0.16 -1.9 759,841 - MMP_RS04005 0.16 -0.5 759,860 + MMP_RS04005 0.17 -1.7 759,882 - MMP_RS04005 0.18 -2.6 759,887 + MMP_RS04005 0.18 -2.5 759,933 - MMP_RS04005 0.21 +1.1 759,974 - MMP_RS04005 0.23 +0.2 759,974 - MMP_RS04005 0.23 +2.3 759,974 - MMP_RS04005 0.23 +2.0 759,975 + MMP_RS04005 0.23 -0.6 759,975 + MMP_RS04005 0.23 -0.1 759,975 + MMP_RS04005 0.23 +2.1 760,013 + MMP_RS04005 0.26 -0.8 760,015 - MMP_RS04005 0.26 -0.4 760,015 - MMP_RS04005 0.26 +1.6 760,058 - MMP_RS04005 0.28 -0.8 760,058 - MMP_RS04005 0.28 -2.7 760,058 - MMP_RS04005 0.28 -0.1 760,059 + MMP_RS04005 0.28 -0.2 760,066 - MMP_RS04005 0.29 -1.5 760,066 - MMP_RS04005 0.29 +0.7 760,068 - MMP_RS04005 0.29 -0.6 760,170 + MMP_RS04005 0.34 +1.5 760,210 + MMP_RS04005 0.37 -0.9 760,231 + MMP_RS04005 0.38 +0.3 760,323 + MMP_RS04005 0.43 -2.9 760,330 - MMP_RS04005 0.43 -1.7 760,331 + MMP_RS04005 0.43 +1.1 760,384 - MMP_RS04005 0.46 +1.6 760,417 - MMP_RS04005 0.48 -0.9 760,418 + MMP_RS04005 0.48 -0.4 760,435 + MMP_RS04005 0.49 +1.3 760,435 + MMP_RS04005 0.49 -1.7 760,485 - MMP_RS04005 0.52 -0.8 760,486 + MMP_RS04005 0.52 +0.0 760,486 + MMP_RS04005 0.52 -1.4 760,577 - MMP_RS04005 0.57 -0.9 760,577 - MMP_RS04005 0.57 +0.1 760,630 + MMP_RS04005 0.60 -0.5 760,634 - MMP_RS04005 0.61 +1.3 760,653 - MMP_RS04005 0.62 +1.1 760,690 - MMP_RS04005 0.64 +0.6 760,710 - MMP_RS04005 0.65 -2.6 760,711 + MMP_RS04005 0.65 +0.7 760,714 - MMP_RS04005 0.65 +0.9 760,715 + MMP_RS04005 0.65 -0.1 760,721 - MMP_RS04005 0.65 -1.9 760,746 - MMP_RS04005 0.67 +0.9 760,757 - MMP_RS04005 0.68 -0.3 760,819 + MMP_RS04005 0.71 -0.8 760,819 + MMP_RS04005 0.71 -1.7 760,870 + MMP_RS04005 0.74 -0.5 760,889 + MMP_RS04005 0.75 -0.2 760,893 + MMP_RS04005 0.75 +2.0 760,992 + MMP_RS04005 0.81 -2.2 761,051 - MMP_RS04005 0.84 -1.9 761,147 - MMP_RS04005 0.90 -1.2 761,147 - MMP_RS04005 0.90 -0.8 761,148 + MMP_RS04005 0.90 +1.6 761,148 + MMP_RS04005 0.90 -1.6 761,148 + MMP_RS04005 0.90 +0.6 761,168 - +1.2 761,195 + +1.5 761,235 + -0.2 761,235 + -0.3 761,238 + -1.2 761,244 - -1.6 761,257 + +0.3 761,321 - +0.6 761,322 + +0.3 761,355 - -1.5 761,355 - -3.0 761,355 - +3.1 761,356 + +1.2 761,356 + +1.3 761,419 - +1.5 761,419 - -0.0 761,420 + -0.7 761,442 - +0.1 761,443 + -2.3 761,479 - -0.2 761,483 - -0.8 761,520 - -0.3 761,520 - -1.0 761,520 - -0.3 761,521 + +2.4 761,522 - -1.5 761,522 - -0.6 761,523 + -1.3 761,523 + +2.6 761,537 + -2.2 761,540 + -0.7 761,552 - +1.6 761,560 - -3.0 761,561 + +1.2 761,562 - -0.3 761,562 - +0.7 761,562 - +0.9 761,563 + -0.9 761,563 + -0.3 761,591 - +0.9 761,593 - +0.5 761,593 - +1.5 761,594 + +0.7 761,600 + +2.0 761,601 - -0.7 761,601 - +1.5 761,601 - +1.1 761,601 - -0.8 761,601 - -1.2 761,602 + -2.7 761,602 + +0.4 761,602 + +1.7 761,602 + -2.0 761,602 + +0.6 761,605 - -1.6 761,605 - -2.0 761,606 + +0.2 761,606 + -2.4 761,632 - +0.1 761,633 + -3.1 761,633 + +0.5 761,642 - -0.2 761,642 - +1.3 761,642 - +0.1 761,642 - -1.6 761,642 - +0.8 761,643 + -0.2 761,643 + -0.3 761,644 - -0.3 761,644 - +1.3 761,645 + +0.4 761,645 + +0.0 761,646 - -0.8 761,689 - -1.2 761,690 + -0.7 761,803 - MMP_RS04010 0.15 -0.9 761,803 - MMP_RS04010 0.15 +1.9 761,812 + MMP_RS04010 0.16 +0.8 761,826 + MMP_RS04010 0.18 +1.6 761,828 + MMP_RS04010 0.18 +0.5 761,860 + MMP_RS04010 0.22 +0.4 761,860 + MMP_RS04010 0.22 -1.3 761,865 - MMP_RS04010 0.23 +0.6 761,866 + MMP_RS04010 0.23 +0.5 761,868 - MMP_RS04010 0.23 -0.2 761,869 + MMP_RS04010 0.23 +0.8 761,871 + MMP_RS04010 0.24 -0.6 761,895 - MMP_RS04010 0.27 +1.0 761,896 + MMP_RS04010 0.27 +0.4 761,913 - MMP_RS04010 0.29 +0.1 761,913 - MMP_RS04010 0.29 +1.8 761,970 - MMP_RS04010 0.37 +2.1 761,975 - MMP_RS04010 0.37 -0.2 761,976 + MMP_RS04010 0.38 +1.0 762,034 - MMP_RS04010 0.45 +2.1 762,038 - MMP_RS04010 0.46 +0.6 762,038 - MMP_RS04010 0.46 +0.7 762,038 - MMP_RS04010 0.46 +1.2 762,048 - MMP_RS04010 0.47 +2.6 762,068 + MMP_RS04010 0.50 -0.5 762,216 - MMP_RS04010 0.69 +1.1 762,250 - MMP_RS04010 0.74 +1.5 762,251 + MMP_RS04010 0.74 +0.2 762,253 - MMP_RS04010 0.74 -0.8 762,254 + MMP_RS04010 0.75 -0.9 762,263 - MMP_RS04010 0.76 -0.3 762,267 - MMP_RS04010 0.76 -0.2 762,268 + MMP_RS04010 0.76 +1.2 762,278 - MMP_RS04010 0.78 +1.3 762,278 - MMP_RS04010 0.78 -0.6 762,278 - MMP_RS04010 0.78 -1.5 762,323 - MMP_RS04010 0.84 +0.5 762,323 - MMP_RS04010 0.84 +1.7
Or see this region's nucleotide sequence