Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03665 and MMP_RS03670 are separated by 194 nucleotides MMP_RS03670 and MMP_RS03675 are separated by 36 nucleotides MMP_RS03675 and MMP_RS03680 are separated by 4 nucleotides
MMP_RS03665: MMP_RS03665 - PadR family transcriptional regulator, at 691,236 to 691,787
_RS03665
MMP_RS03670: MMP_RS03670 - DUF1890 domain-containing protein, at 691,982 to 692,425
_RS03670
MMP_RS03675: MMP_RS03675 - RimK family alpha-L-glutamate ligase, at 692,462 to 693,340
_RS03675
MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367
_RS03680
Position (kb) 692
693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 691.633 kb on + strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.639 kb on - strand, within MMP_RS03665 at 691.640 kb on + strand, within MMP_RS03665 at 691.640 kb on + strand, within MMP_RS03665 at 691.642 kb on - strand, within MMP_RS03665 at 691.642 kb on - strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.643 kb on + strand, within MMP_RS03665 at 691.717 kb on - strand, within MMP_RS03665 at 691.717 kb on - strand, within MMP_RS03665 at 691.718 kb on + strand, within MMP_RS03665 at 691.718 kb on + strand, within MMP_RS03665 at 691.718 kb on + strand, within MMP_RS03665 at 691.758 kb on - strand at 691.759 kb on + strand at 691.789 kb on + strand at 691.801 kb on - strand at 691.839 kb on - strand at 691.843 kb on - strand at 691.843 kb on - strand at 691.844 kb on + strand at 691.845 kb on - strand at 691.871 kb on - strand at 691.875 kb on - strand at 691.876 kb on + strand at 691.898 kb on + strand at 691.905 kb on + strand at 691.933 kb on + strand at 691.956 kb on + strand at 691.956 kb on + strand at 691.956 kb on + strand at 691.956 kb on + strand at 691.967 kb on + strand at 692.053 kb on - strand, within MMP_RS03670 at 692.080 kb on + strand, within MMP_RS03670 at 692.141 kb on - strand, within MMP_RS03670 at 692.243 kb on - strand, within MMP_RS03670 at 692.251 kb on + strand, within MMP_RS03670 at 692.256 kb on + strand, within MMP_RS03670 at 692.423 kb on - strand at 692.442 kb on + strand at 692.442 kb on + strand at 692.461 kb on - strand at 692.462 kb on + strand at 692.548 kb on - strand at 692.551 kb on - strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.553 kb on - strand, within MMP_RS03675 at 692.609 kb on + strand, within MMP_RS03675 at 692.617 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.628 kb on - strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.709 kb on + strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.908 kb on + strand, within MMP_RS03675 at 692.983 kb on - strand, within MMP_RS03675 at 693.198 kb on - strand, within MMP_RS03675 at 693.199 kb on + strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.286 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.361 kb on + strand at 693.432 kb on - strand at 693.466 kb on - strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.717 kb on - strand, within MMP_RS03680 at 693.815 kb on + strand, within MMP_RS03680 at 694.043 kb on - strand, within MMP_RS03680 at 694.048 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 691,633 + MMP_RS03665 0.72 +0.4 691,639 - MMP_RS03665 0.73 -0.1 691,639 - MMP_RS03665 0.73 +0.1 691,639 - MMP_RS03665 0.73 -0.5 691,639 - MMP_RS03665 0.73 +0.4 691,639 - MMP_RS03665 0.73 +0.7 691,640 + MMP_RS03665 0.73 -2.0 691,640 + MMP_RS03665 0.73 +1.9 691,642 - MMP_RS03665 0.74 -1.3 691,642 - MMP_RS03665 0.74 +0.2 691,643 + MMP_RS03665 0.74 +1.2 691,643 + MMP_RS03665 0.74 -3.0 691,643 + MMP_RS03665 0.74 -0.8 691,643 + MMP_RS03665 0.74 +0.4 691,643 + MMP_RS03665 0.74 +2.5 691,717 - MMP_RS03665 0.87 +1.9 691,717 - MMP_RS03665 0.87 +0.8 691,718 + MMP_RS03665 0.87 +2.2 691,718 + MMP_RS03665 0.87 +0.9 691,718 + MMP_RS03665 0.87 -0.2 691,758 - +0.9 691,759 + -1.3 691,789 + -0.3 691,801 - -0.9 691,839 - +1.1 691,843 - -1.1 691,843 - -2.6 691,844 + -0.1 691,845 - +2.4 691,871 - -0.6 691,875 - +1.1 691,876 + +1.6 691,898 + -0.4 691,905 + -0.6 691,933 + +0.1 691,956 + -0.4 691,956 + +0.6 691,956 + +1.1 691,956 + -0.9 691,967 + -1.6 692,053 - MMP_RS03670 0.16 +0.8 692,080 + MMP_RS03670 0.22 -0.6 692,141 - MMP_RS03670 0.36 +1.8 692,243 - MMP_RS03670 0.59 +1.0 692,251 + MMP_RS03670 0.61 -0.7 692,256 + MMP_RS03670 0.62 -0.3 692,423 - +1.8 692,442 + +0.5 692,442 + +1.0 692,461 - +1.8 692,462 + -0.5 692,548 - +1.2 692,551 - MMP_RS03675 0.10 +0.0 692,552 + MMP_RS03675 0.10 +1.7 692,552 + MMP_RS03675 0.10 +0.5 692,553 - MMP_RS03675 0.10 +1.7 692,609 + MMP_RS03675 0.17 +0.6 692,617 - MMP_RS03675 0.18 +2.4 692,619 - MMP_RS03675 0.18 +1.6 692,619 - MMP_RS03675 0.18 +1.5 692,620 + MMP_RS03675 0.18 +2.0 692,620 + MMP_RS03675 0.18 +2.2 692,628 - MMP_RS03675 0.19 +1.4 692,692 + MMP_RS03675 0.26 +1.6 692,692 + MMP_RS03675 0.26 +1.9 692,697 + MMP_RS03675 0.27 +2.2 692,697 + MMP_RS03675 0.27 +0.4 692,709 + MMP_RS03675 0.28 +2.2 692,721 - MMP_RS03675 0.29 +0.3 692,721 - MMP_RS03675 0.29 +3.1 692,721 - MMP_RS03675 0.29 +1.1 692,721 - MMP_RS03675 0.29 +0.9 692,830 - MMP_RS03675 0.42 +0.9 692,830 - MMP_RS03675 0.42 +2.2 692,908 + MMP_RS03675 0.51 +2.0 692,983 - MMP_RS03675 0.59 +1.4 693,198 - MMP_RS03675 0.84 +1.0 693,199 + MMP_RS03675 0.84 +0.6 693,240 - MMP_RS03675 0.89 +1.7 693,240 - MMP_RS03675 0.89 +0.4 693,286 + +1.8 693,359 + -1.2 693,359 + +0.9 693,359 + -0.2 693,359 + -0.6 693,361 + +0.0 693,432 - +1.5 693,466 - MMP_RS03680 0.12 -1.0 693,467 + MMP_RS03680 0.12 -0.8 693,467 + MMP_RS03680 0.12 -0.7 693,467 + MMP_RS03680 0.12 -2.5 693,717 - MMP_RS03680 0.36 -0.5 693,815 + MMP_RS03680 0.46 -1.0 694,043 - MMP_RS03680 0.68 -0.6 694,048 + MMP_RS03680 0.69 -1.3 694,067 + MMP_RS03680 0.71 -0.8 694,067 + MMP_RS03680 0.71 +0.4 694,276 + +0.1
Or see this region's nucleotide sequence