Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03530

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03525 and MMP_RS03530 are separated by 15 nucleotidesMMP_RS03530 and MMP_RS03535 are separated by 241 nucleotidesMMP_RS03535 and MMP_RS03540 are separated by 10 nucleotidesMMP_RS03540 and MMP_RS03545 are separated by 136 nucleotides MMP_RS03525: MMP_RS03525 - ketopantoate reductase family protein, at 660,406 to 661,326 _RS03525 MMP_RS03530: MMP_RS03530 - tetratricopeptide repeat protein, at 661,342 to 662,571 _RS03530 MMP_RS03535: MMP_RS03535 - helix-turn-helix transcriptional regulator, at 662,813 to 663,016 _RS03535 MMP_RS03540: MMP_RS03540 - DUF2178 domain-containing protein, at 663,027 to 663,413 _RS03540 MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947 _RS03545 Position (kb) 661 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 660.350 kb on - strandat 660.366 kb on - strandat 660.562 kb on - strand, within MMP_RS03525at 660.562 kb on - strand, within MMP_RS03525at 660.563 kb on + strand, within MMP_RS03525at 660.564 kb on - strand, within MMP_RS03525at 660.612 kb on - strand, within MMP_RS03525at 660.616 kb on + strand, within MMP_RS03525at 660.618 kb on + strand, within MMP_RS03525at 660.735 kb on - strand, within MMP_RS03525at 660.735 kb on - strand, within MMP_RS03525at 660.762 kb on - strand, within MMP_RS03525at 660.762 kb on - strand, within MMP_RS03525at 660.797 kb on - strand, within MMP_RS03525at 660.863 kb on - strand, within MMP_RS03525at 660.875 kb on - strand, within MMP_RS03525at 660.922 kb on + strand, within MMP_RS03525at 660.952 kb on - strand, within MMP_RS03525at 660.953 kb on + strand, within MMP_RS03525at 660.966 kb on + strand, within MMP_RS03525at 660.985 kb on + strand, within MMP_RS03525at 661.042 kb on + strand, within MMP_RS03525at 661.046 kb on - strand, within MMP_RS03525at 661.049 kb on + strand, within MMP_RS03525at 661.056 kb on + strand, within MMP_RS03525at 661.089 kb on + strand, within MMP_RS03525at 661.194 kb on - strand, within MMP_RS03525at 661.367 kb on + strandat 661.382 kb on - strandat 661.382 kb on - strandat 661.407 kb on - strandat 661.549 kb on + strand, within MMP_RS03530at 661.549 kb on + strand, within MMP_RS03530at 661.556 kb on + strand, within MMP_RS03530at 661.654 kb on + strand, within MMP_RS03530at 661.724 kb on + strand, within MMP_RS03530at 661.740 kb on + strand, within MMP_RS03530at 661.770 kb on - strand, within MMP_RS03530at 661.792 kb on + strand, within MMP_RS03530at 661.842 kb on + strand, within MMP_RS03530at 661.876 kb on + strand, within MMP_RS03530at 661.877 kb on - strand, within MMP_RS03530at 661.877 kb on - strand, within MMP_RS03530at 661.877 kb on - strand, within MMP_RS03530at 661.879 kb on - strand, within MMP_RS03530at 661.879 kb on - strand, within MMP_RS03530at 661.880 kb on + strand, within MMP_RS03530at 661.880 kb on + strand, within MMP_RS03530at 661.890 kb on + strand, within MMP_RS03530at 661.892 kb on - strand, within MMP_RS03530at 661.941 kb on - strand, within MMP_RS03530at 661.942 kb on + strand, within MMP_RS03530at 661.942 kb on + strand, within MMP_RS03530at 661.944 kb on + strand, within MMP_RS03530at 662.012 kb on + strand, within MMP_RS03530at 662.064 kb on + strand, within MMP_RS03530at 662.170 kb on - strand, within MMP_RS03530at 662.420 kb on + strand, within MMP_RS03530at 662.420 kb on + strand, within MMP_RS03530at 662.468 kb on - strandat 662.496 kb on - strandat 662.497 kb on + strandat 662.499 kb on - strandat 662.527 kb on - strandat 662.558 kb on + strandat 662.573 kb on - strandat 662.592 kb on + strandat 662.600 kb on + strandat 662.629 kb on - strandat 662.802 kb on - strandat 662.803 kb on + strandat 662.824 kb on - strandat 662.833 kb on + strandat 662.840 kb on - strand, within MMP_RS03535at 662.841 kb on + strand, within MMP_RS03535at 662.841 kb on + strand, within MMP_RS03535at 663.020 kb on - strandat 663.029 kb on + strandat 663.050 kb on - strandat 663.059 kb on + strandat 663.059 kb on + strandat 663.059 kb on + strandat 663.062 kb on - strandat 663.125 kb on - strand, within MMP_RS03540at 663.272 kb on - strand, within MMP_RS03540at 663.300 kb on - strand, within MMP_RS03540at 663.302 kb on - strand, within MMP_RS03540at 663.303 kb on + strand, within MMP_RS03540at 663.306 kb on - strand, within MMP_RS03540at 663.309 kb on - strand, within MMP_RS03540at 663.310 kb on + strand, within MMP_RS03540at 663.323 kb on + strand, within MMP_RS03540at 663.370 kb on + strand, within MMP_RS03540at 663.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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660,350 - -1.3
660,366 - -1.6
660,562 - MMP_RS03525 0.17 +1.1
660,562 - MMP_RS03525 0.17 +0.3
660,563 + MMP_RS03525 0.17 +0.5
660,564 - MMP_RS03525 0.17 +0.7
660,612 - MMP_RS03525 0.22 +0.2
660,616 + MMP_RS03525 0.23 -1.0
660,618 + MMP_RS03525 0.23 -0.3
660,735 - MMP_RS03525 0.36 -1.1
660,735 - MMP_RS03525 0.36 +0.8
660,762 - MMP_RS03525 0.39 -0.5
660,762 - MMP_RS03525 0.39 -0.3
660,797 - MMP_RS03525 0.42 -1.6
660,863 - MMP_RS03525 0.50 -0.1
660,875 - MMP_RS03525 0.51 +1.5
660,922 + MMP_RS03525 0.56 -1.7
660,952 - MMP_RS03525 0.59 +2.3
660,953 + MMP_RS03525 0.59 +1.1
660,966 + MMP_RS03525 0.61 +0.8
660,985 + MMP_RS03525 0.63 -1.0
661,042 + MMP_RS03525 0.69 -0.0
661,046 - MMP_RS03525 0.69 -0.4
661,049 + MMP_RS03525 0.70 -1.4
661,056 + MMP_RS03525 0.71 +2.3
661,089 + MMP_RS03525 0.74 -1.2
661,194 - MMP_RS03525 0.86 -2.1
661,367 + +1.0
661,382 - -0.6
661,382 - +1.7
661,407 - +2.0
661,549 + MMP_RS03530 0.17 +1.4
661,549 + MMP_RS03530 0.17 +0.6
661,556 + MMP_RS03530 0.17 -0.1
661,654 + MMP_RS03530 0.25 -0.4
661,724 + MMP_RS03530 0.31 +0.7
661,740 + MMP_RS03530 0.32 -3.1
661,770 - MMP_RS03530 0.35 +1.4
661,792 + MMP_RS03530 0.37 +1.4
661,842 + MMP_RS03530 0.41 -0.7
661,876 + MMP_RS03530 0.43 +1.6
661,877 - MMP_RS03530 0.43 +0.4
661,877 - MMP_RS03530 0.43 +1.4
661,877 - MMP_RS03530 0.43 +0.0
661,879 - MMP_RS03530 0.44 -0.5
661,879 - MMP_RS03530 0.44 +0.6
661,880 + MMP_RS03530 0.44 -1.2
661,880 + MMP_RS03530 0.44 +1.5
661,890 + MMP_RS03530 0.45 +0.4
661,892 - MMP_RS03530 0.45 +1.1
661,941 - MMP_RS03530 0.49 +0.4
661,942 + MMP_RS03530 0.49 -2.8
661,942 + MMP_RS03530 0.49 +0.7
661,944 + MMP_RS03530 0.49 -1.9
662,012 + MMP_RS03530 0.54 -1.0
662,064 + MMP_RS03530 0.59 +1.0
662,170 - MMP_RS03530 0.67 +0.2
662,420 + MMP_RS03530 0.88 -2.5
662,420 + MMP_RS03530 0.88 -2.4
662,468 - +0.0
662,496 - +1.9
662,497 + -0.3
662,499 - -2.9
662,527 - +0.2
662,558 + -0.2
662,573 - +1.1
662,592 + +0.7
662,600 + -2.3
662,629 - -0.3
662,802 - -1.7
662,803 + +1.2
662,824 - -2.9
662,833 + +1.8
662,840 - MMP_RS03535 0.13 +1.0
662,841 + MMP_RS03535 0.14 -1.9
662,841 + MMP_RS03535 0.14 -0.9
663,020 - +0.7
663,029 + +2.7
663,050 - -2.1
663,059 + +0.8
663,059 + +0.9
663,059 + -2.3
663,062 - +1.0
663,125 - MMP_RS03540 0.25 +0.4
663,272 - MMP_RS03540 0.63 +1.5
663,300 - MMP_RS03540 0.71 +1.4
663,302 - MMP_RS03540 0.71 +1.9
663,303 + MMP_RS03540 0.71 +0.4
663,306 - MMP_RS03540 0.72 +2.2
663,309 - MMP_RS03540 0.73 -0.4
663,310 + MMP_RS03540 0.73 +0.8
663,323 + MMP_RS03540 0.76 +1.0
663,370 + MMP_RS03540 0.89 -3.7
663,523 - +0.5

Or see this region's nucleotide sequence