Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03390 and MMP_RS03395 are separated by 212 nucleotides MMP_RS03395 and MMP_RS03400 are separated by 1 nucleotides MMP_RS03400 and MMP_RS03405 are separated by 3 nucleotides
MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821
_RS03390
MMP_RS03395: MMP_RS03395 - hypothetical protein, at 638,034 to 638,234
_RS03395
MMP_RS03400: MMP_RS03400 - archease, at 638,236 to 638,652
_RS03400
MMP_RS03405: MMP_RS03405 - RNA 3'-terminal phosphate cyclase, at 638,656 to 639,675
_RS03405
Position (kb) 638
639 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 637.352 kb on + strand, within MMP_RS03390 at 637.433 kb on - strand, within MMP_RS03390 at 637.441 kb on - strand, within MMP_RS03390 at 637.469 kb on + strand, within MMP_RS03390 at 637.476 kb on - strand, within MMP_RS03390 at 637.502 kb on + strand, within MMP_RS03390 at 637.582 kb on + strand, within MMP_RS03390 at 637.586 kb on + strand, within MMP_RS03390 at 637.594 kb on + strand, within MMP_RS03390 at 637.821 kb on - strand at 637.836 kb on - strand at 637.837 kb on + strand at 637.841 kb on + strand at 637.864 kb on - strand at 637.866 kb on - strand at 637.866 kb on - strand at 637.867 kb on + strand at 637.870 kb on - strand at 637.870 kb on - strand at 637.871 kb on + strand at 637.871 kb on + strand at 637.872 kb on - strand at 637.873 kb on + strand at 637.873 kb on + strand at 637.874 kb on - strand at 637.874 kb on - strand at 637.887 kb on + strand at 637.919 kb on + strand at 637.922 kb on - strand at 637.923 kb on + strand at 637.927 kb on + strand at 638.002 kb on - strand at 638.002 kb on - strand at 638.006 kb on - strand at 638.054 kb on - strand, within MMP_RS03395 at 638.127 kb on + strand, within MMP_RS03395 at 638.132 kb on - strand, within MMP_RS03395 at 638.212 kb on + strand, within MMP_RS03395 at 638.315 kb on + strand, within MMP_RS03400 at 638.374 kb on - strand, within MMP_RS03400 at 638.375 kb on + strand, within MMP_RS03400 at 638.473 kb on - strand, within MMP_RS03400 at 638.473 kb on - strand, within MMP_RS03400 at 638.647 kb on + strand at 638.648 kb on - strand at 638.653 kb on + strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.751 kb on + strand at 638.951 kb on - strand, within MMP_RS03405 at 638.952 kb on + strand, within MMP_RS03405 at 639.010 kb on + strand, within MMP_RS03405 at 639.060 kb on - strand, within MMP_RS03405 at 639.075 kb on - strand, within MMP_RS03405 at 639.388 kb on + strand, within MMP_RS03405 at 639.402 kb on - strand, within MMP_RS03405 at 639.451 kb on - strand, within MMP_RS03405 at 639.470 kb on + strand, within MMP_RS03405 at 639.567 kb on - strand, within MMP_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 637,352 + MMP_RS03390 0.50 -1.4 637,433 - MMP_RS03390 0.59 -3.0 637,441 - MMP_RS03390 0.60 -1.4 637,469 + MMP_RS03390 0.63 -0.8 637,476 - MMP_RS03390 0.63 -1.7 637,502 + MMP_RS03390 0.66 +0.8 637,582 + MMP_RS03390 0.75 -0.0 637,586 + MMP_RS03390 0.75 -2.0 637,594 + MMP_RS03390 0.76 -1.8 637,821 - +0.3 637,836 - -0.0 637,837 + +0.2 637,841 + -1.7 637,864 - +0.1 637,866 - -1.4 637,866 - +1.7 637,867 + -1.0 637,870 - +0.7 637,870 - -3.1 637,871 + +1.0 637,871 + -0.3 637,872 - +0.3 637,873 + -0.6 637,873 + +0.3 637,874 - +0.1 637,874 - -1.8 637,887 + +0.9 637,919 + -1.5 637,922 - -1.5 637,923 + -0.6 637,927 + -0.6 638,002 - +1.5 638,002 - +1.5 638,006 - +3.0 638,054 - MMP_RS03395 0.10 -2.6 638,127 + MMP_RS03395 0.46 -1.3 638,132 - MMP_RS03395 0.49 -1.8 638,212 + MMP_RS03395 0.89 +0.4 638,315 + MMP_RS03400 0.19 -1.2 638,374 - MMP_RS03400 0.33 -3.2 638,375 + MMP_RS03400 0.33 -2.0 638,473 - MMP_RS03400 0.57 +0.1 638,473 - MMP_RS03400 0.57 -3.8 638,647 + -2.8 638,648 - -1.3 638,653 + -2.2 638,677 - -0.5 638,677 - -0.3 638,677 - +0.3 638,677 - -0.4 638,677 - +0.7 638,677 - -1.7 638,751 + -3.1 638,951 - MMP_RS03405 0.29 +0.3 638,952 + MMP_RS03405 0.29 +3.0 639,010 + MMP_RS03405 0.35 -3.2 639,060 - MMP_RS03405 0.40 +0.1 639,075 - MMP_RS03405 0.41 +1.0 639,388 + MMP_RS03405 0.72 +0.8 639,402 - MMP_RS03405 0.73 -0.0 639,451 - MMP_RS03405 0.78 -3.6 639,470 + MMP_RS03405 0.80 -1.2 639,567 - MMP_RS03405 0.89 +0.8
Or see this region's nucleotide sequence