Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03330

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03325 and MMP_RS03330 are separated by 131 nucleotidesMMP_RS03330 and MMP_RS03335 are separated by 153 nucleotides MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601 _RS03325 MMP_RS03330: MMP_RS03330 - rubrerythrin family protein, at 625,733 to 626,323 _RS03330 MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670 _RS03335 Position (kb) 625 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 624.775 kb on + strand, within MMP_RS03325at 624.777 kb on + strand, within MMP_RS03325at 624.915 kb on + strand, within MMP_RS03325at 624.990 kb on + strand, within MMP_RS03325at 625.075 kb on - strand, within MMP_RS03325at 625.099 kb on - strand, within MMP_RS03325at 625.432 kb on - strand, within MMP_RS03325at 625.496 kb on + strandat 625.574 kb on - strandat 625.645 kb on - strandat 625.668 kb on - strandat 625.669 kb on + strandat 625.669 kb on + strandat 625.689 kb on - strandat 625.697 kb on + strandat 625.795 kb on - strand, within MMP_RS03330at 625.801 kb on - strand, within MMP_RS03330at 625.801 kb on - strand, within MMP_RS03330at 625.802 kb on + strand, within MMP_RS03330at 625.802 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.815 kb on + strand, within MMP_RS03330at 625.815 kb on + strand, within MMP_RS03330at 625.860 kb on - strand, within MMP_RS03330at 625.909 kb on - strand, within MMP_RS03330at 625.915 kb on + strand, within MMP_RS03330at 625.986 kb on + strand, within MMP_RS03330at 625.993 kb on - strand, within MMP_RS03330at 625.993 kb on - strand, within MMP_RS03330at 625.994 kb on + strand, within MMP_RS03330at 626.088 kb on - strand, within MMP_RS03330at 626.110 kb on + strand, within MMP_RS03330at 626.208 kb on - strand, within MMP_RS03330at 626.209 kb on + strand, within MMP_RS03330at 626.242 kb on + strand, within MMP_RS03330at 626.294 kb on - strandat 626.319 kb on + strandat 626.375 kb on + strandat 626.396 kb on + strandat 626.551 kb on + strandat 626.563 kb on - strandat 626.581 kb on + strandat 626.763 kb on - strand, within MMP_RS03335at 626.764 kb on + strand, within MMP_RS03335at 626.796 kb on + strand, within MMP_RS03335at 627.036 kb on - strand, within MMP_RS03335at 627.037 kb on + strand, within MMP_RS03335at 627.055 kb on - strand, within MMP_RS03335at 627.136 kb on + strand, within MMP_RS03335at 627.253 kb on - strand, within MMP_RS03335

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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624,775 + MMP_RS03325 0.29 +0.2
624,777 + MMP_RS03325 0.29 -2.1
624,915 + MMP_RS03325 0.41 -0.2
624,990 + MMP_RS03325 0.48 -1.5
625,075 - MMP_RS03325 0.55 +0.3
625,099 - MMP_RS03325 0.57 -3.2
625,432 - MMP_RS03325 0.85 -2.8
625,496 + -2.2
625,574 - -1.3
625,645 - +0.2
625,668 - -1.6
625,669 + +0.4
625,669 + -2.1
625,689 - -1.4
625,697 + +0.1
625,795 - MMP_RS03330 0.10 -2.2
625,801 - MMP_RS03330 0.12 +0.1
625,801 - MMP_RS03330 0.12 -0.7
625,802 + MMP_RS03330 0.12 -0.6
625,802 + MMP_RS03330 0.12 -1.3
625,808 + MMP_RS03330 0.13 -1.1
625,808 + MMP_RS03330 0.13 +0.1
625,808 + MMP_RS03330 0.13 -0.8
625,812 - MMP_RS03330 0.13 +0.1
625,812 - MMP_RS03330 0.13 -1.3
625,812 - MMP_RS03330 0.13 -2.6
625,812 - MMP_RS03330 0.13 +0.5
625,812 - MMP_RS03330 0.13 +0.5
625,812 - MMP_RS03330 0.13 +0.8
625,813 + MMP_RS03330 0.14 +1.2
625,813 + MMP_RS03330 0.14 -2.4
625,813 + MMP_RS03330 0.14 +0.1
625,813 + MMP_RS03330 0.14 -2.0
625,815 + MMP_RS03330 0.14 -2.1
625,815 + MMP_RS03330 0.14 -1.1
625,860 - MMP_RS03330 0.21 -2.2
625,909 - MMP_RS03330 0.30 +2.0
625,915 + MMP_RS03330 0.31 -0.8
625,986 + MMP_RS03330 0.43 -0.6
625,993 - MMP_RS03330 0.44 -1.2
625,993 - MMP_RS03330 0.44 -0.2
625,994 + MMP_RS03330 0.44 -0.8
626,088 - MMP_RS03330 0.60 -1.7
626,110 + MMP_RS03330 0.64 +0.9
626,208 - MMP_RS03330 0.80 -1.9
626,209 + MMP_RS03330 0.81 -0.2
626,242 + MMP_RS03330 0.86 -1.7
626,294 - +0.6
626,319 + -2.0
626,375 + +0.2
626,396 + -2.9
626,551 + -1.3
626,563 - -0.7
626,581 + +0.9
626,763 - MMP_RS03335 0.24 -0.0
626,764 + MMP_RS03335 0.24 +0.7
626,796 + MMP_RS03335 0.27 -0.7
627,036 - MMP_RS03335 0.47 +2.5
627,037 + MMP_RS03335 0.47 +1.9
627,055 - MMP_RS03335 0.48 +1.7
627,136 + MMP_RS03335 0.55 +1.6
627,253 - MMP_RS03335 0.65 +0.5

Or see this region's nucleotide sequence