Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03140 and MMP_RS03145 are separated by 17 nucleotides MMP_RS03145 and MMP_RS03150 are separated by 156 nucleotides
MMP_RS03140: MMP_RS03140 - hypothetical protein, at 591,868 to 593,298
_RS03140
MMP_RS03145: MMP_RS03145 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 593,316 to 594,008
_RS03145
MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451
_RS03150
Position (kb) 593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 592.338 kb on + strand, within MMP_RS03140 at 592.339 kb on - strand, within MMP_RS03140 at 592.340 kb on + strand, within MMP_RS03140 at 592.377 kb on - strand, within MMP_RS03140 at 592.381 kb on - strand, within MMP_RS03140 at 592.382 kb on + strand, within MMP_RS03140 at 592.420 kb on - strand, within MMP_RS03140 at 592.423 kb on + strand, within MMP_RS03140 at 592.554 kb on + strand, within MMP_RS03140 at 592.564 kb on - strand, within MMP_RS03140 at 592.565 kb on + strand, within MMP_RS03140 at 592.571 kb on + strand, within MMP_RS03140 at 592.667 kb on - strand, within MMP_RS03140 at 592.757 kb on - strand, within MMP_RS03140 at 593.313 kb on - strand at 593.313 kb on - strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.455 kb on - strand, within MMP_RS03145 at 593.455 kb on - strand, within MMP_RS03145 at 593.462 kb on - strand, within MMP_RS03145 at 593.504 kb on - strand, within MMP_RS03145 at 593.507 kb on + strand, within MMP_RS03145 at 593.554 kb on + strand, within MMP_RS03145 at 593.597 kb on - strand, within MMP_RS03145 at 594.006 kb on - strand at 594.007 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.017 kb on + strand at 594.023 kb on - strand at 594.059 kb on - strand at 594.068 kb on - strand at 594.069 kb on + strand at 594.069 kb on + strand at 594.071 kb on + strand at 594.091 kb on + strand at 594.103 kb on + strand at 594.121 kb on + strand at 594.135 kb on - strand at 594.144 kb on - strand at 594.148 kb on + strand at 594.327 kb on - strand, within MMP_RS03150 at 594.385 kb on - strand, within MMP_RS03150 at 594.438 kb on - strand, within MMP_RS03150 at 594.466 kb on - strand, within MMP_RS03150 at 594.477 kb on - strand, within MMP_RS03150 at 594.478 kb on + strand, within MMP_RS03150 at 594.494 kb on + strand, within MMP_RS03150 at 594.494 kb on + strand, within MMP_RS03150 at 594.498 kb on + strand, within MMP_RS03150 at 594.498 kb on + strand, within MMP_RS03150 at 594.687 kb on + strand, within MMP_RS03150 at 594.890 kb on - strand, within MMP_RS03150
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 592,338 + MMP_RS03140 0.33 -0.1 592,339 - MMP_RS03140 0.33 -4.2 592,340 + MMP_RS03140 0.33 +0.6 592,377 - MMP_RS03140 0.36 +0.3 592,381 - MMP_RS03140 0.36 -0.5 592,382 + MMP_RS03140 0.36 +1.3 592,420 - MMP_RS03140 0.39 -0.3 592,423 + MMP_RS03140 0.39 +0.4 592,554 + MMP_RS03140 0.48 +2.2 592,564 - MMP_RS03140 0.49 +0.8 592,565 + MMP_RS03140 0.49 +0.8 592,571 + MMP_RS03140 0.49 -1.4 592,667 - MMP_RS03140 0.56 -0.8 592,757 - MMP_RS03140 0.62 +2.1 593,313 - -1.4 593,313 - -1.0 593,354 + -1.1 593,354 + -2.0 593,354 + +0.3 593,455 - MMP_RS03145 0.20 -1.0 593,455 - MMP_RS03145 0.20 +0.4 593,462 - MMP_RS03145 0.21 -2.9 593,504 - MMP_RS03145 0.27 +1.0 593,507 + MMP_RS03145 0.28 -0.7 593,554 + MMP_RS03145 0.34 -1.0 593,597 - MMP_RS03145 0.41 -3.2 594,006 - +1.4 594,007 + -1.2 594,016 - -0.3 594,016 - -0.6 594,017 + +1.2 594,023 - +0.5 594,059 - +0.8 594,068 - +1.1 594,069 + -1.6 594,069 + +1.5 594,071 + -0.4 594,091 + +0.0 594,103 + +0.5 594,121 + +1.8 594,135 - +1.9 594,144 - +0.2 594,148 + +1.2 594,327 - MMP_RS03150 0.13 +1.3 594,385 - MMP_RS03150 0.17 -1.5 594,438 - MMP_RS03150 0.21 +2.4 594,466 - MMP_RS03150 0.23 -0.4 594,477 - MMP_RS03150 0.24 +1.4 594,478 + MMP_RS03150 0.24 +0.8 594,494 + MMP_RS03150 0.26 +2.1 594,494 + MMP_RS03150 0.26 +0.9 594,498 + MMP_RS03150 0.26 +2.3 594,498 + MMP_RS03150 0.26 +0.3 594,687 + MMP_RS03150 0.41 +0.6 594,890 - MMP_RS03150 0.56 +2.0
Or see this region's nucleotide sequence