Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03120 and MMP_RS03125 overlap by 4 nucleotides MMP_RS03125 and MMP_RS03130 are separated by 76 nucleotides MMP_RS03130 and MMP_RS03135 are separated by 18 nucleotides
MMP_RS03120: MMP_RS03120 - hypothetical protein, at 588,738 to 588,920
_RS03120
MMP_RS03125: MMP_RS03125 - cell division ATPase MinD, at 588,917 to 589,702
_RS03125
MMP_RS03130: MMP_RS03130 - hypothetical protein, at 589,779 to 590,345
_RS03130
MMP_RS03135: MMP_RS03135 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 590,364 to 591,674
_RS03135
Position (kb) 589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 588.880 kb on + strand, within MMP_RS03120 at 588.880 kb on + strand, within MMP_RS03120 at 588.888 kb on - strand, within MMP_RS03120 at 588.891 kb on - strand, within MMP_RS03120 at 588.938 kb on - strand at 588.993 kb on - strand at 589.069 kb on - strand, within MMP_RS03125 at 589.129 kb on - strand, within MMP_RS03125 at 589.284 kb on + strand, within MMP_RS03125 at 589.295 kb on - strand, within MMP_RS03125 at 589.322 kb on + strand, within MMP_RS03125 at 589.596 kb on + strand, within MMP_RS03125 at 589.683 kb on + strand at 589.736 kb on - strand at 589.737 kb on + strand at 589.737 kb on + strand at 589.738 kb on - strand at 589.738 kb on - strand at 589.738 kb on - strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.739 kb on + strand at 589.740 kb on - strand at 589.741 kb on + strand at 589.746 kb on + strand at 589.754 kb on + strand at 589.764 kb on - strand at 589.767 kb on - strand at 589.767 kb on - strand at 589.767 kb on - strand at 589.767 kb on - strand at 589.768 kb on + strand at 589.769 kb on - strand at 589.769 kb on - strand at 589.780 kb on - strand at 589.827 kb on + strand at 589.827 kb on + strand at 589.887 kb on + strand, within MMP_RS03130 at 589.889 kb on - strand, within MMP_RS03130 at 589.897 kb on + strand, within MMP_RS03130 at 590.016 kb on + strand, within MMP_RS03130 at 590.031 kb on - strand, within MMP_RS03130 at 590.055 kb on - strand, within MMP_RS03130 at 590.060 kb on - strand, within MMP_RS03130 at 590.100 kb on + strand, within MMP_RS03130 at 590.100 kb on + strand, within MMP_RS03130 at 590.103 kb on + strand, within MMP_RS03130 at 590.267 kb on - strand, within MMP_RS03130 at 590.277 kb on - strand, within MMP_RS03130 at 590.323 kb on - strand at 590.387 kb on - strand at 590.401 kb on + strand at 590.446 kb on - strand at 590.528 kb on - strand at 590.730 kb on + strand at 590.905 kb on - strand at 590.983 kb on + strand at 591.114 kb on - strand at 591.321 kb on - strand at 591.340 kb on - strand at 591.341 kb on + strand at 591.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 588,880 + MMP_RS03120 0.78 +2.4 588,880 + MMP_RS03120 0.78 +0.5 588,888 - MMP_RS03120 0.82 +0.4 588,891 - MMP_RS03120 0.84 -0.1 588,938 - +0.1 588,993 - -4.1 589,069 - MMP_RS03125 0.19 +1.8 589,129 - MMP_RS03125 0.27 +0.3 589,284 + MMP_RS03125 0.47 +0.5 589,295 - MMP_RS03125 0.48 +0.9 589,322 + MMP_RS03125 0.52 +0.6 589,596 + MMP_RS03125 0.86 +0.3 589,683 + -0.1 589,736 - -1.2 589,737 + +0.1 589,737 + +0.4 589,738 - +1.1 589,738 - +0.1 589,738 - -0.8 589,739 + -0.2 589,739 + -0.1 589,739 + +1.5 589,739 + -0.6 589,739 + +0.6 589,740 - +1.0 589,741 + -0.6 589,746 + -0.1 589,754 + +0.6 589,764 - +1.0 589,767 - -1.9 589,767 - -0.6 589,767 - -1.1 589,767 - +1.1 589,768 + -0.1 589,769 - +0.6 589,769 - +0.2 589,780 - +0.8 589,827 + -0.1 589,827 + -3.4 589,887 + MMP_RS03130 0.19 +0.0 589,889 - MMP_RS03130 0.19 -0.1 589,897 + MMP_RS03130 0.21 -1.6 590,016 + MMP_RS03130 0.42 +0.5 590,031 - MMP_RS03130 0.44 -0.9 590,055 - MMP_RS03130 0.49 -0.4 590,060 - MMP_RS03130 0.50 -0.7 590,100 + MMP_RS03130 0.57 -1.9 590,100 + MMP_RS03130 0.57 -1.1 590,103 + MMP_RS03130 0.57 -2.5 590,267 - MMP_RS03130 0.86 -2.0 590,277 - MMP_RS03130 0.88 -2.7 590,323 - -2.2 590,387 - -1.0 590,401 + -0.5 590,446 - -1.5 590,528 - -1.0 590,730 + -2.0 590,905 - -1.5 590,983 + -0.3 591,114 - -3.7 591,321 - -2.2 591,340 - -0.4 591,341 + -3.4 591,341 + -2.2
Or see this region's nucleotide sequence