Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02885 and MMP_RS02890 are separated by 216 nucleotides MMP_RS02890 and MMP_RS02895 are separated by 61 nucleotides MMP_RS02895 and MMP_RS02900 are separated by 75 nucleotides MMP_RS02900 and MMP_RS02905 are separated by 9 nucleotides
MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601
_RS02885
MMP_RS02890: MMP_RS02890 - TIGR00296 family protein, at 550,818 to 551,429
_RS02890
MMP_RS02895: MMP_RS02895 - DHH family phosphoesterase, at 551,491 to 552,786
_RS02895
MMP_RS02900: MMP_RS02900 - imidazoleglycerol-phosphate dehydratase HisB, at 552,862 to 553,434
_RS02900
MMP_RS02905: MMP_RS02905 - 2-thiouracil desulfurase family protein, at 553,444 to 553,992
_RS02905
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.585 kb on - strand at 550.651 kb on - strand at 550.713 kb on + strand at 550.740 kb on + strand at 550.858 kb on + strand at 550.874 kb on + strand at 550.874 kb on + strand at 550.946 kb on + strand, within MMP_RS02890 at 550.991 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.114 kb on + strand, within MMP_RS02890 at 551.170 kb on + strand, within MMP_RS02890 at 551.204 kb on - strand, within MMP_RS02890 at 551.237 kb on + strand, within MMP_RS02890 at 551.261 kb on - strand, within MMP_RS02890 at 551.343 kb on + strand, within MMP_RS02890 at 551.398 kb on - strand at 551.415 kb on - strand at 551.466 kb on + strand at 551.498 kb on - strand at 551.520 kb on - strand at 551.646 kb on + strand, within MMP_RS02895 at 552.050 kb on + strand, within MMP_RS02895 at 552.092 kb on - strand, within MMP_RS02895 at 552.113 kb on + strand, within MMP_RS02895 at 552.131 kb on + strand, within MMP_RS02895 at 552.187 kb on + strand, within MMP_RS02895 at 552.189 kb on + strand, within MMP_RS02895 at 552.300 kb on - strand, within MMP_RS02895 at 552.336 kb on + strand, within MMP_RS02895 at 552.422 kb on - strand, within MMP_RS02895 at 552.425 kb on + strand, within MMP_RS02895 at 552.433 kb on - strand, within MMP_RS02895 at 552.530 kb on - strand, within MMP_RS02895 at 552.828 kb on + strand at 552.829 kb on - strand at 552.829 kb on - strand at 552.830 kb on + strand at 552.832 kb on - strand at 552.833 kb on + strand at 552.833 kb on + strand at 552.834 kb on - strand at 552.918 kb on + strand at 553.313 kb on - strand, within MMP_RS02900 at 553.530 kb on - strand, within MMP_RS02905 at 553.717 kb on + strand, within MMP_RS02905 at 553.737 kb on + strand, within MMP_RS02905 at 553.746 kb on + strand, within MMP_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 550,585 - +2.2 550,651 - +0.4 550,713 + +1.6 550,740 + -2.2 550,858 + +0.3 550,874 + -3.2 550,874 + -0.7 550,946 + MMP_RS02890 0.21 -0.4 550,991 - MMP_RS02890 0.28 -1.1 551,113 - MMP_RS02890 0.48 +1.7 551,113 - MMP_RS02890 0.48 +0.6 551,114 + MMP_RS02890 0.48 +1.2 551,170 + MMP_RS02890 0.58 +0.8 551,204 - MMP_RS02890 0.63 +0.3 551,237 + MMP_RS02890 0.68 +1.4 551,261 - MMP_RS02890 0.72 +0.4 551,343 + MMP_RS02890 0.86 +1.5 551,398 - -1.3 551,415 - +1.2 551,466 + +1.7 551,498 - +1.4 551,520 - +1.0 551,646 + MMP_RS02895 0.12 +1.4 552,050 + MMP_RS02895 0.43 +1.7 552,092 - MMP_RS02895 0.46 -0.3 552,113 + MMP_RS02895 0.48 +1.5 552,131 + MMP_RS02895 0.49 +1.8 552,187 + MMP_RS02895 0.54 +1.4 552,189 + MMP_RS02895 0.54 -1.4 552,300 - MMP_RS02895 0.62 +1.4 552,336 + MMP_RS02895 0.65 +1.8 552,422 - MMP_RS02895 0.72 +2.5 552,425 + MMP_RS02895 0.72 -0.5 552,433 - MMP_RS02895 0.73 +0.9 552,530 - MMP_RS02895 0.80 +1.9 552,828 + -1.8 552,829 - -2.1 552,829 - -3.5 552,830 + +0.9 552,832 - -1.9 552,833 + -0.0 552,833 + -1.1 552,834 - -3.0 552,918 + -1.0 553,313 - MMP_RS02900 0.79 -2.5 553,530 - MMP_RS02905 0.16 -0.5 553,717 + MMP_RS02905 0.50 +1.4 553,737 + MMP_RS02905 0.53 -2.3 553,746 + MMP_RS02905 0.55 +0.3
Or see this region's nucleotide sequence