Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02870 and MMP_RS02875 are separated by 33 nucleotides MMP_RS02875 and MMP_RS02880 are separated by 14 nucleotides MMP_RS02880 and MMP_RS02885 are separated by 26 nucleotides
MMP_RS02870: MMP_RS02870 - hypothetical protein, at 546,548 to 547,150
_RS02870
MMP_RS02875: MMP_RS02875 - chorismate pyruvate-lyase family protein, at 547,184 to 547,699
_RS02875
MMP_RS02880: MMP_RS02880 - AmmeMemoRadiSam system radical SAM enzyme, at 547,714 to 548,724
_RS02880
MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601
_RS02885
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 546.784 kb on - strand, within MMP_RS02870 at 546.792 kb on + strand, within MMP_RS02870 at 546.865 kb on - strand, within MMP_RS02870 at 547.066 kb on + strand, within MMP_RS02870 at 547.074 kb on - strand, within MMP_RS02870 at 547.075 kb on + strand, within MMP_RS02870 at 547.095 kb on - strand at 547.107 kb on - strand at 547.123 kb on + strand at 547.123 kb on + strand at 547.161 kb on + strand at 547.173 kb on - strand at 547.183 kb on - strand at 547.192 kb on - strand at 547.236 kb on - strand, within MMP_RS02875 at 547.285 kb on - strand, within MMP_RS02875 at 547.289 kb on + strand, within MMP_RS02875 at 547.299 kb on - strand, within MMP_RS02875 at 547.341 kb on + strand, within MMP_RS02875 at 547.363 kb on + strand, within MMP_RS02875 at 547.367 kb on - strand, within MMP_RS02875 at 547.441 kb on + strand, within MMP_RS02875 at 547.454 kb on + strand, within MMP_RS02875 at 547.583 kb on + strand, within MMP_RS02875 at 547.628 kb on - strand, within MMP_RS02875 at 547.634 kb on + strand, within MMP_RS02875 at 547.634 kb on + strand, within MMP_RS02875 at 547.634 kb on + strand, within MMP_RS02875 at 547.635 kb on - strand, within MMP_RS02875 at 547.665 kb on - strand at 547.679 kb on + strand at 547.856 kb on - strand, within MMP_RS02880 at 547.920 kb on - strand, within MMP_RS02880 at 548.098 kb on - strand, within MMP_RS02880 at 548.099 kb on + strand, within MMP_RS02880 at 548.245 kb on + strand, within MMP_RS02880 at 548.246 kb on - strand, within MMP_RS02880 at 548.471 kb on + strand, within MMP_RS02880 at 548.501 kb on - strand, within MMP_RS02880 at 548.501 kb on - strand, within MMP_RS02880 at 548.501 kb on - strand, within MMP_RS02880 at 548.502 kb on + strand, within MMP_RS02880 at 548.555 kb on - strand, within MMP_RS02880 at 548.556 kb on + strand, within MMP_RS02880 at 548.556 kb on + strand, within MMP_RS02880 at 548.558 kb on + strand, within MMP_RS02880 at 548.596 kb on - strand, within MMP_RS02880 at 548.617 kb on + strand, within MMP_RS02880 at 548.665 kb on + strand at 548.718 kb on + strand at 548.718 kb on + strand at 548.737 kb on - strand at 548.738 kb on + strand at 548.757 kb on - strand at 548.758 kb on + strand at 548.761 kb on - strand at 548.762 kb on + strand at 548.762 kb on + strand at 548.786 kb on - strand at 548.876 kb on + strand at 549.091 kb on - strand, within MMP_RS02885 at 549.188 kb on + strand, within MMP_RS02885 at 549.203 kb on - strand, within MMP_RS02885 at 549.204 kb on + strand, within MMP_RS02885 at 549.204 kb on + strand, within MMP_RS02885 at 549.206 kb on + strand, within MMP_RS02885 at 549.224 kb on - strand, within MMP_RS02885 at 549.308 kb on + strand, within MMP_RS02885 at 549.328 kb on - strand, within MMP_RS02885 at 549.329 kb on + strand, within MMP_RS02885 at 549.357 kb on + strand, within MMP_RS02885 at 549.374 kb on - strand, within MMP_RS02885 at 549.689 kb on + strand, within MMP_RS02885 at 549.692 kb on + strand, within MMP_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 546,784 - MMP_RS02870 0.39 +0.8 546,792 + MMP_RS02870 0.40 +0.2 546,865 - MMP_RS02870 0.53 +2.3 547,066 + MMP_RS02870 0.86 +1.5 547,074 - MMP_RS02870 0.87 +2.2 547,075 + MMP_RS02870 0.87 +2.1 547,095 - -0.0 547,107 - +0.7 547,123 + -1.4 547,123 + +0.6 547,161 + -0.2 547,173 - -0.7 547,183 - -1.4 547,192 - -0.8 547,236 - MMP_RS02875 0.10 -2.9 547,285 - MMP_RS02875 0.20 -1.9 547,289 + MMP_RS02875 0.20 -2.2 547,299 - MMP_RS02875 0.22 -0.9 547,341 + MMP_RS02875 0.30 -2.4 547,363 + MMP_RS02875 0.35 -2.8 547,367 - MMP_RS02875 0.35 -1.7 547,441 + MMP_RS02875 0.50 -1.3 547,454 + MMP_RS02875 0.52 -3.1 547,583 + MMP_RS02875 0.77 -1.1 547,628 - MMP_RS02875 0.86 -1.8 547,634 + MMP_RS02875 0.87 -2.0 547,634 + MMP_RS02875 0.87 -1.3 547,634 + MMP_RS02875 0.87 -3.0 547,635 - MMP_RS02875 0.87 -0.9 547,665 - -1.6 547,679 + -1.8 547,856 - MMP_RS02880 0.14 +3.3 547,920 - MMP_RS02880 0.20 +2.4 548,098 - MMP_RS02880 0.38 -1.0 548,099 + MMP_RS02880 0.38 +0.6 548,245 + MMP_RS02880 0.53 +4.6 548,246 - MMP_RS02880 0.53 +3.4 548,471 + MMP_RS02880 0.75 +0.3 548,501 - MMP_RS02880 0.78 +3.3 548,501 - MMP_RS02880 0.78 -0.2 548,501 - MMP_RS02880 0.78 +3.7 548,502 + MMP_RS02880 0.78 +1.2 548,555 - MMP_RS02880 0.83 +3.7 548,556 + MMP_RS02880 0.83 -0.3 548,556 + MMP_RS02880 0.83 +1.8 548,558 + MMP_RS02880 0.83 +2.2 548,596 - MMP_RS02880 0.87 +1.6 548,617 + MMP_RS02880 0.89 +0.6 548,665 + +0.8 548,718 + -1.0 548,718 + +0.7 548,737 - +4.0 548,738 + +0.5 548,757 - +4.2 548,758 + +4.0 548,761 - +4.1 548,762 + +3.7 548,762 + +3.6 548,786 - +4.2 548,876 + +4.1 549,091 - MMP_RS02885 0.18 +3.7 549,188 + MMP_RS02885 0.24 +4.3 549,203 - MMP_RS02885 0.24 +4.7 549,204 + MMP_RS02885 0.24 +4.9 549,204 + MMP_RS02885 0.24 +4.5 549,206 + MMP_RS02885 0.25 +4.3 549,224 - MMP_RS02885 0.26 +4.8 549,308 + MMP_RS02885 0.30 +3.6 549,328 - MMP_RS02885 0.31 +5.3 549,329 + MMP_RS02885 0.31 +3.6 549,357 + MMP_RS02885 0.33 +4.6 549,374 - MMP_RS02885 0.34 +4.1 549,689 + MMP_RS02885 0.51 +4.7 549,692 + MMP_RS02885 0.51 +2.7
Or see this region's nucleotide sequence