Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02810 and MMP_RS02815 are separated by 114 nucleotides MMP_RS02815 and MMP_RS02820 are separated by 6 nucleotides MMP_RS02820 and MMP_RS02825 are separated by 4 nucleotides MMP_RS02825 and MMP_RS02830 are separated by 0 nucleotides MMP_RS02830 and MMP_RS02835 are separated by 148 nucleotides
MMP_RS02810: MMP_RS02810 - hypothetical protein, at 536,793 to 538,262
_RS02810
MMP_RS02815: MMP_RS02815 - hypothetical protein, at 538,377 to 538,952
_RS02815
MMP_RS02820: MMP_RS02820 - hypothetical protein, at 538,959 to 539,189
_RS02820
MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276
_RS02825
MMP_RS02830: MMP_RS02830 - DUF432 domain-containing protein, at 540,277 to 540,915
_RS02830
MMP_RS02835: MMP_RS02835 - CGGC domain-containing protein, at 541,064 to 541,477
_RS02835
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 538.472 kb on - strand, within MMP_RS02815 at 538.847 kb on + strand, within MMP_RS02815 at 538.976 kb on - strand at 538.977 kb on + strand at 539.376 kb on - strand, within MMP_RS02825 at 539.405 kb on + strand, within MMP_RS02825 at 539.431 kb on - strand, within MMP_RS02825 at 539.435 kb on + strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.439 kb on + strand, within MMP_RS02825 at 539.445 kb on - strand, within MMP_RS02825 at 539.456 kb on + strand, within MMP_RS02825 at 539.614 kb on + strand, within MMP_RS02825 at 539.724 kb on - strand, within MMP_RS02825 at 539.725 kb on + strand, within MMP_RS02825 at 539.766 kb on - strand, within MMP_RS02825 at 539.930 kb on - strand, within MMP_RS02825 at 539.931 kb on + strand, within MMP_RS02825 at 539.967 kb on + strand, within MMP_RS02825 at 540.013 kb on - strand, within MMP_RS02825 at 540.020 kb on - strand, within MMP_RS02825 at 540.021 kb on + strand, within MMP_RS02825 at 540.393 kb on - strand, within MMP_RS02830 at 540.538 kb on + strand, within MMP_RS02830 at 540.541 kb on - strand, within MMP_RS02830 at 540.542 kb on + strand, within MMP_RS02830 at 540.574 kb on - strand, within MMP_RS02830 at 540.575 kb on + strand, within MMP_RS02830 at 540.575 kb on + strand, within MMP_RS02830 at 540.629 kb on + strand, within MMP_RS02830 at 540.649 kb on - strand, within MMP_RS02830 at 540.678 kb on + strand, within MMP_RS02830 at 540.827 kb on - strand, within MMP_RS02830 at 540.915 kb on - strand at 540.919 kb on + strand at 540.921 kb on - strand at 540.922 kb on + strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.926 kb on + strand at 540.972 kb on + strand at 541.175 kb on + strand, within MMP_RS02835 at 541.222 kb on - strand, within MMP_RS02835 at 541.238 kb on - strand, within MMP_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 538,472 - MMP_RS02815 0.16 -0.8 538,847 + MMP_RS02815 0.82 -0.0 538,976 - +0.1 538,977 + -1.1 539,376 - MMP_RS02825 0.17 +0.6 539,405 + MMP_RS02825 0.19 +0.1 539,431 - MMP_RS02825 0.22 +0.5 539,435 + MMP_RS02825 0.22 -0.7 539,438 - MMP_RS02825 0.23 -1.9 539,438 - MMP_RS02825 0.23 -2.4 539,438 - MMP_RS02825 0.23 -0.4 539,438 - MMP_RS02825 0.23 +0.0 539,438 - MMP_RS02825 0.23 +1.8 539,439 + MMP_RS02825 0.23 -0.4 539,445 - MMP_RS02825 0.23 +1.2 539,456 + MMP_RS02825 0.24 +0.3 539,614 + MMP_RS02825 0.39 -1.7 539,724 - MMP_RS02825 0.49 -0.4 539,725 + MMP_RS02825 0.49 +0.0 539,766 - MMP_RS02825 0.53 -0.5 539,930 - MMP_RS02825 0.68 -0.7 539,931 + MMP_RS02825 0.68 -2.4 539,967 + MMP_RS02825 0.71 +1.2 540,013 - MMP_RS02825 0.76 -0.8 540,020 - MMP_RS02825 0.76 +2.6 540,021 + MMP_RS02825 0.76 +0.9 540,393 - MMP_RS02830 0.18 -0.3 540,538 + MMP_RS02830 0.41 +0.6 540,541 - MMP_RS02830 0.41 -0.4 540,542 + MMP_RS02830 0.41 +0.4 540,574 - MMP_RS02830 0.46 -1.1 540,575 + MMP_RS02830 0.47 -0.3 540,575 + MMP_RS02830 0.47 -0.7 540,629 + MMP_RS02830 0.55 +0.3 540,649 - MMP_RS02830 0.58 -0.3 540,678 + MMP_RS02830 0.63 -1.2 540,827 - MMP_RS02830 0.86 -3.1 540,915 - +0.2 540,919 + +0.8 540,921 - +0.2 540,922 + +0.7 540,923 - +0.7 540,923 - -2.4 540,923 - -0.2 540,923 - +0.2 540,923 - +0.1 540,925 - -0.8 540,925 - -1.7 540,925 - -1.1 540,925 - +0.5 540,926 + -2.6 540,972 + -1.3 541,175 + MMP_RS02835 0.27 +1.4 541,222 - MMP_RS02835 0.38 -1.6 541,238 - MMP_RS02835 0.42 -0.0
Or see this region's nucleotide sequence