Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02635

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS02630 and MMP_RS02635 are separated by 35 nucleotidesMMP_RS02635 and MMP_RS02640 are separated by 255 nucleotidesMMP_RS02640 and MMP_RS02645 are separated by 131 nucleotides MMP_RS02630: MMP_RS02630 - rubredoxin, at 499,642 to 501,126 _RS02630 MMP_RS02635: MMP_RS02635 - class I SAM-dependent methyltransferase, at 501,162 to 501,839 _RS02635 MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658 _RS02640 MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530 _RS02645 Position (kb) 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 500.289 kb on - strand, within MMP_RS02630at 500.289 kb on - strand, within MMP_RS02630at 500.294 kb on + strand, within MMP_RS02630at 500.300 kb on - strand, within MMP_RS02630at 500.305 kb on - strand, within MMP_RS02630at 500.305 kb on - strand, within MMP_RS02630at 500.306 kb on + strand, within MMP_RS02630at 500.310 kb on + strand, within MMP_RS02630at 500.474 kb on - strand, within MMP_RS02630at 500.502 kb on - strand, within MMP_RS02630at 500.528 kb on - strand, within MMP_RS02630at 500.618 kb on + strand, within MMP_RS02630at 500.637 kb on - strand, within MMP_RS02630at 500.763 kb on - strand, within MMP_RS02630at 500.766 kb on + strand, within MMP_RS02630at 500.776 kb on + strand, within MMP_RS02630at 501.272 kb on + strand, within MMP_RS02635at 501.272 kb on + strand, within MMP_RS02635at 501.275 kb on - strand, within MMP_RS02635at 501.504 kb on + strand, within MMP_RS02635at 501.543 kb on - strand, within MMP_RS02635at 501.543 kb on - strand, within MMP_RS02635at 501.544 kb on + strand, within MMP_RS02635at 501.546 kb on + strand, within MMP_RS02635at 501.546 kb on + strand, within MMP_RS02635at 501.600 kb on + strand, within MMP_RS02635at 501.626 kb on - strand, within MMP_RS02635at 501.626 kb on - strand, within MMP_RS02635at 501.630 kb on + strand, within MMP_RS02635at 501.643 kb on + strand, within MMP_RS02635at 501.702 kb on - strand, within MMP_RS02635at 501.785 kb on - strandat 501.787 kb on - strandat 501.792 kb on + strandat 501.792 kb on + strandat 501.793 kb on - strandat 501.834 kb on + strandat 501.862 kb on - strandat 501.874 kb on - strandat 501.875 kb on + strandat 501.876 kb on - strandat 501.876 kb on - strandat 501.908 kb on + strandat 501.988 kb on - strandat 501.989 kb on + strandat 501.991 kb on + strandat 502.011 kb on - strandat 502.016 kb on - strandat 502.035 kb on - strandat 502.035 kb on - strandat 502.036 kb on + strandat 502.036 kb on + strandat 502.036 kb on + strandat 502.036 kb on + strandat 502.039 kb on - strandat 502.039 kb on - strandat 502.039 kb on - strandat 502.055 kb on + strandat 502.114 kb on - strandat 502.162 kb on + strand, within MMP_RS02640at 502.162 kb on + strand, within MMP_RS02640at 502.165 kb on - strand, within MMP_RS02640at 502.166 kb on + strand, within MMP_RS02640at 502.166 kb on + strand, within MMP_RS02640at 502.187 kb on - strand, within MMP_RS02640at 502.187 kb on - strand, within MMP_RS02640at 502.188 kb on + strand, within MMP_RS02640at 502.202 kb on + strand, within MMP_RS02640at 502.220 kb on + strand, within MMP_RS02640at 502.220 kb on + strand, within MMP_RS02640at 502.220 kb on + strand, within MMP_RS02640at 502.220 kb on + strand, within MMP_RS02640at 502.271 kb on + strand, within MMP_RS02640at 502.271 kb on + strand, within MMP_RS02640at 502.272 kb on - strand, within MMP_RS02640at 502.277 kb on + strand, within MMP_RS02640at 502.309 kb on - strand, within MMP_RS02640at 502.309 kb on - strand, within MMP_RS02640at 502.313 kb on - strand, within MMP_RS02640at 502.316 kb on + strand, within MMP_RS02640at 502.332 kb on + strand, within MMP_RS02640at 502.333 kb on - strand, within MMP_RS02640at 502.334 kb on + strand, within MMP_RS02640at 502.347 kb on - strand, within MMP_RS02640at 502.348 kb on + strand, within MMP_RS02640at 502.355 kb on - strand, within MMP_RS02640at 502.359 kb on - strand, within MMP_RS02640at 502.364 kb on + strand, within MMP_RS02640at 502.426 kb on - strand, within MMP_RS02640at 502.550 kb on + strand, within MMP_RS02640at 502.550 kb on + strand, within MMP_RS02640at 502.759 kb on - strandat 502.766 kb on - strandat 502.766 kb on - strandat 502.767 kb on + strandat 502.771 kb on - strandat 502.771 kb on - strandat 502.806 kb on - strandat 502.829 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
remove
500,289 - MMP_RS02630 0.44 +0.8
500,289 - MMP_RS02630 0.44 -0.7
500,294 + MMP_RS02630 0.44 +1.3
500,300 - MMP_RS02630 0.44 -1.6
500,305 - MMP_RS02630 0.45 +0.1
500,305 - MMP_RS02630 0.45 -0.2
500,306 + MMP_RS02630 0.45 -0.1
500,310 + MMP_RS02630 0.45 -0.8
500,474 - MMP_RS02630 0.56 -0.2
500,502 - MMP_RS02630 0.58 -0.3
500,528 - MMP_RS02630 0.60 +1.1
500,618 + MMP_RS02630 0.66 +0.7
500,637 - MMP_RS02630 0.67 -1.6
500,763 - MMP_RS02630 0.75 -2.4
500,766 + MMP_RS02630 0.76 -0.2
500,776 + MMP_RS02630 0.76 +2.8
501,272 + MMP_RS02635 0.16 -0.5
501,272 + MMP_RS02635 0.16 -1.7
501,275 - MMP_RS02635 0.17 -0.9
501,504 + MMP_RS02635 0.50 -3.2
501,543 - MMP_RS02635 0.56 -2.4
501,543 - MMP_RS02635 0.56 +0.9
501,544 + MMP_RS02635 0.56 -0.5
501,546 + MMP_RS02635 0.57 +0.1
501,546 + MMP_RS02635 0.57 -1.5
501,600 + MMP_RS02635 0.65 +0.6
501,626 - MMP_RS02635 0.68 -1.2
501,626 - MMP_RS02635 0.68 +0.6
501,630 + MMP_RS02635 0.69 -0.1
501,643 + MMP_RS02635 0.71 -0.5
501,702 - MMP_RS02635 0.80 +1.0
501,785 - +0.0
501,787 - -0.4
501,792 + +0.3
501,792 + +0.0
501,793 - -2.2
501,834 + +0.2
501,862 - +0.6
501,874 - +0.9
501,875 + +1.3
501,876 - -1.0
501,876 - -0.1
501,908 + -0.4
501,988 - +1.0
501,989 + +1.3
501,991 + -0.6
502,011 - +0.8
502,016 - -3.2
502,035 - -3.0
502,035 - -0.0
502,036 + -1.7
502,036 + -1.0
502,036 + +0.1
502,036 + +1.3
502,039 - -1.2
502,039 - -0.8
502,039 - -1.5
502,055 + +1.0
502,114 - +0.3
502,162 + MMP_RS02640 0.12 -0.5
502,162 + MMP_RS02640 0.12 -0.5
502,165 - MMP_RS02640 0.12 +1.1
502,166 + MMP_RS02640 0.13 -0.3
502,166 + MMP_RS02640 0.13 -1.9
502,187 - MMP_RS02640 0.16 +0.1
502,187 - MMP_RS02640 0.16 +0.0
502,188 + MMP_RS02640 0.16 +1.4
502,202 + MMP_RS02640 0.19 -0.9
502,220 + MMP_RS02640 0.22 +0.8
502,220 + MMP_RS02640 0.22 -1.8
502,220 + MMP_RS02640 0.22 +0.5
502,220 + MMP_RS02640 0.22 +0.3
502,271 + MMP_RS02640 0.31 -2.4
502,271 + MMP_RS02640 0.31 -0.9
502,272 - MMP_RS02640 0.31 +1.2
502,277 + MMP_RS02640 0.32 +2.5
502,309 - MMP_RS02640 0.38 -0.4
502,309 - MMP_RS02640 0.38 -0.4
502,313 - MMP_RS02640 0.39 +1.0
502,316 + MMP_RS02640 0.39 +0.2
502,332 + MMP_RS02640 0.42 +0.9
502,333 - MMP_RS02640 0.42 -1.2
502,334 + MMP_RS02640 0.42 +0.3
502,347 - MMP_RS02640 0.45 +0.7
502,348 + MMP_RS02640 0.45 -0.8
502,355 - MMP_RS02640 0.46 -0.6
502,359 - MMP_RS02640 0.47 -1.2
502,364 + MMP_RS02640 0.48 +1.3
502,426 - MMP_RS02640 0.59 -1.0
502,550 + MMP_RS02640 0.81 +1.7
502,550 + MMP_RS02640 0.81 +1.8
502,759 - +0.3
502,766 - +0.0
502,766 - -0.4
502,767 + +1.2
502,771 - -2.5
502,771 - +0.2
502,806 - -1.8
502,829 - +0.1

Or see this region's nucleotide sequence