Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02630 and MMP_RS02635 are separated by 35 nucleotides MMP_RS02635 and MMP_RS02640 are separated by 255 nucleotides MMP_RS02640 and MMP_RS02645 are separated by 131 nucleotides
MMP_RS02630: MMP_RS02630 - rubredoxin, at 499,642 to 501,126
_RS02630
MMP_RS02635: MMP_RS02635 - class I SAM-dependent methyltransferase, at 501,162 to 501,839
_RS02635
MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658
_RS02640
MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530
_RS02645
Position (kb)
501
502 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 500.289 kb on - strand, within MMP_RS02630 at 500.289 kb on - strand, within MMP_RS02630 at 500.294 kb on + strand, within MMP_RS02630 at 500.300 kb on - strand, within MMP_RS02630 at 500.305 kb on - strand, within MMP_RS02630 at 500.305 kb on - strand, within MMP_RS02630 at 500.306 kb on + strand, within MMP_RS02630 at 500.310 kb on + strand, within MMP_RS02630 at 500.474 kb on - strand, within MMP_RS02630 at 500.502 kb on - strand, within MMP_RS02630 at 500.528 kb on - strand, within MMP_RS02630 at 500.618 kb on + strand, within MMP_RS02630 at 500.637 kb on - strand, within MMP_RS02630 at 500.763 kb on - strand, within MMP_RS02630 at 500.766 kb on + strand, within MMP_RS02630 at 500.776 kb on + strand, within MMP_RS02630 at 501.272 kb on + strand, within MMP_RS02635 at 501.272 kb on + strand, within MMP_RS02635 at 501.275 kb on - strand, within MMP_RS02635 at 501.504 kb on + strand, within MMP_RS02635 at 501.543 kb on - strand, within MMP_RS02635 at 501.543 kb on - strand, within MMP_RS02635 at 501.544 kb on + strand, within MMP_RS02635 at 501.546 kb on + strand, within MMP_RS02635 at 501.546 kb on + strand, within MMP_RS02635 at 501.600 kb on + strand, within MMP_RS02635 at 501.626 kb on - strand, within MMP_RS02635 at 501.626 kb on - strand, within MMP_RS02635 at 501.630 kb on + strand, within MMP_RS02635 at 501.643 kb on + strand, within MMP_RS02635 at 501.702 kb on - strand, within MMP_RS02635 at 501.785 kb on - strand at 501.787 kb on - strand at 501.792 kb on + strand at 501.792 kb on + strand at 501.793 kb on - strand at 501.834 kb on + strand at 501.862 kb on - strand at 501.874 kb on - strand at 501.875 kb on + strand at 501.876 kb on - strand at 501.876 kb on - strand at 501.908 kb on + strand at 501.988 kb on - strand at 501.989 kb on + strand at 501.991 kb on + strand at 502.011 kb on - strand at 502.016 kb on - strand at 502.035 kb on - strand at 502.035 kb on - strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.055 kb on + strand at 502.114 kb on - strand at 502.162 kb on + strand, within MMP_RS02640 at 502.162 kb on + strand, within MMP_RS02640 at 502.165 kb on - strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.188 kb on + strand, within MMP_RS02640 at 502.202 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.272 kb on - strand, within MMP_RS02640 at 502.277 kb on + strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.313 kb on - strand, within MMP_RS02640 at 502.316 kb on + strand, within MMP_RS02640 at 502.332 kb on + strand, within MMP_RS02640 at 502.333 kb on - strand, within MMP_RS02640 at 502.334 kb on + strand, within MMP_RS02640 at 502.347 kb on - strand, within MMP_RS02640 at 502.348 kb on + strand, within MMP_RS02640 at 502.355 kb on - strand, within MMP_RS02640 at 502.359 kb on - strand, within MMP_RS02640 at 502.364 kb on + strand, within MMP_RS02640 at 502.426 kb on - strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.759 kb on - strand at 502.766 kb on - strand at 502.766 kb on - strand at 502.767 kb on + strand at 502.771 kb on - strand at 502.771 kb on - strand at 502.806 kb on - strand at 502.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 500,289 - MMP_RS02630 0.44 +0.8 500,289 - MMP_RS02630 0.44 -0.7 500,294 + MMP_RS02630 0.44 +1.3 500,300 - MMP_RS02630 0.44 -1.6 500,305 - MMP_RS02630 0.45 +0.1 500,305 - MMP_RS02630 0.45 -0.2 500,306 + MMP_RS02630 0.45 -0.1 500,310 + MMP_RS02630 0.45 -0.8 500,474 - MMP_RS02630 0.56 -0.2 500,502 - MMP_RS02630 0.58 -0.3 500,528 - MMP_RS02630 0.60 +1.1 500,618 + MMP_RS02630 0.66 +0.7 500,637 - MMP_RS02630 0.67 -1.6 500,763 - MMP_RS02630 0.75 -2.4 500,766 + MMP_RS02630 0.76 -0.2 500,776 + MMP_RS02630 0.76 +2.8 501,272 + MMP_RS02635 0.16 -0.5 501,272 + MMP_RS02635 0.16 -1.7 501,275 - MMP_RS02635 0.17 -0.9 501,504 + MMP_RS02635 0.50 -3.2 501,543 - MMP_RS02635 0.56 -2.4 501,543 - MMP_RS02635 0.56 +0.9 501,544 + MMP_RS02635 0.56 -0.5 501,546 + MMP_RS02635 0.57 +0.1 501,546 + MMP_RS02635 0.57 -1.5 501,600 + MMP_RS02635 0.65 +0.6 501,626 - MMP_RS02635 0.68 -1.2 501,626 - MMP_RS02635 0.68 +0.6 501,630 + MMP_RS02635 0.69 -0.1 501,643 + MMP_RS02635 0.71 -0.5 501,702 - MMP_RS02635 0.80 +1.0 501,785 - +0.0 501,787 - -0.4 501,792 + +0.3 501,792 + +0.0 501,793 - -2.2 501,834 + +0.2 501,862 - +0.6 501,874 - +0.9 501,875 + +1.3 501,876 - -1.0 501,876 - -0.1 501,908 + -0.4 501,988 - +1.0 501,989 + +1.3 501,991 + -0.6 502,011 - +0.8 502,016 - -3.2 502,035 - -3.0 502,035 - -0.0 502,036 + -1.7 502,036 + -1.0 502,036 + +0.1 502,036 + +1.3 502,039 - -1.2 502,039 - -0.8 502,039 - -1.5 502,055 + +1.0 502,114 - +0.3 502,162 + MMP_RS02640 0.12 -0.5 502,162 + MMP_RS02640 0.12 -0.5 502,165 - MMP_RS02640 0.12 +1.1 502,166 + MMP_RS02640 0.13 -0.3 502,166 + MMP_RS02640 0.13 -1.9 502,187 - MMP_RS02640 0.16 +0.1 502,187 - MMP_RS02640 0.16 +0.0 502,188 + MMP_RS02640 0.16 +1.4 502,202 + MMP_RS02640 0.19 -0.9 502,220 + MMP_RS02640 0.22 +0.8 502,220 + MMP_RS02640 0.22 -1.8 502,220 + MMP_RS02640 0.22 +0.5 502,220 + MMP_RS02640 0.22 +0.3 502,271 + MMP_RS02640 0.31 -2.4 502,271 + MMP_RS02640 0.31 -0.9 502,272 - MMP_RS02640 0.31 +1.2 502,277 + MMP_RS02640 0.32 +2.5 502,309 - MMP_RS02640 0.38 -0.4 502,309 - MMP_RS02640 0.38 -0.4 502,313 - MMP_RS02640 0.39 +1.0 502,316 + MMP_RS02640 0.39 +0.2 502,332 + MMP_RS02640 0.42 +0.9 502,333 - MMP_RS02640 0.42 -1.2 502,334 + MMP_RS02640 0.42 +0.3 502,347 - MMP_RS02640 0.45 +0.7 502,348 + MMP_RS02640 0.45 -0.8 502,355 - MMP_RS02640 0.46 -0.6 502,359 - MMP_RS02640 0.47 -1.2 502,364 + MMP_RS02640 0.48 +1.3 502,426 - MMP_RS02640 0.59 -1.0 502,550 + MMP_RS02640 0.81 +1.7 502,550 + MMP_RS02640 0.81 +1.8 502,759 - +0.3 502,766 - +0.0 502,766 - -0.4 502,767 + +1.2 502,771 - -2.5 502,771 - +0.2 502,806 - -1.8 502,829 - +0.1
Or see this region's nucleotide sequence