Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02470 and MMP_RS02475 are separated by 154 nucleotides MMP_RS02475 and MMP_RS02480 are separated by 98 nucleotides MMP_RS02480 and MMP_RS02485 are separated by 2 nucleotides MMP_RS02485 and MMP_RS02490 overlap by 14 nucleotides MMP_RS02490 and MMP_RS02495 are separated by 11 nucleotides MMP_RS02495 and MMP_RS02500 are separated by 1 nucleotides
MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974
_RS02470
MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380
_RS02475
MMP_RS02480: MMP_RS02480 - hypothetical protein, at 464,479 to 464,997
_RS02480
MMP_RS02485: MMP_RS02485 - DUF2080 family transposase-associated protein, at 465,000 to 465,224
_RS02485
MMP_RS02490: MMP_RS02490 - hypothetical protein, at 465,211 to 465,405
_RS02490
MMP_RS02495: MMP_RS02495 - hypothetical protein, at 465,417 to 465,800
_RS02495
MMP_RS02500: MMP_RS02500 - minichromosome maintenance protein MCM, at 465,802 to 467,826
_RS02500
Position (kb) 464
465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 463.481 kb on - strand at 463.499 kb on - strand at 463.509 kb on - strand at 463.510 kb on + strand at 463.517 kb on - strand at 463.517 kb on - strand at 463.527 kb on - strand at 463.531 kb on - strand at 463.532 kb on + strand at 463.532 kb on + strand at 463.547 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.637 kb on + strand at 463.676 kb on + strand, within MMP_RS02470 at 463.819 kb on - strand, within MMP_RS02470 at 464.000 kb on + strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.010 kb on + strand at 464.011 kb on - strand at 464.012 kb on + strand at 464.032 kb on - strand at 464.103 kb on + strand at 464.103 kb on + strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.106 kb on + strand at 464.106 kb on + strand at 464.198 kb on - strand, within MMP_RS02475 at 464.199 kb on + strand, within MMP_RS02475 at 464.236 kb on - strand, within MMP_RS02475 at 464.364 kb on + strand at 464.455 kb on - strand at 464.676 kb on + strand, within MMP_RS02480 at 464.825 kb on - strand, within MMP_RS02480 at 465.306 kb on - strand, within MMP_RS02490 at 465.306 kb on - strand, within MMP_RS02490 at 465.307 kb on + strand, within MMP_RS02490 at 465.432 kb on - strand at 465.679 kb on + strand, within MMP_RS02495 at 465.682 kb on - strand, within MMP_RS02495 at 465.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 463,481 - +1.0 463,499 - +0.8 463,509 - +0.6 463,510 + +1.2 463,517 - -4.2 463,517 - +1.0 463,527 - +0.2 463,531 - +1.2 463,532 + -0.4 463,532 + +1.7 463,547 - -0.0 463,551 - +0.1 463,551 - +2.2 463,551 - +0.4 463,637 + -1.6 463,676 + MMP_RS02470 0.18 +0.1 463,819 - MMP_RS02470 0.57 -1.9 464,000 + -4.6 464,009 - -0.1 464,009 - +0.1 464,009 - -1.7 464,010 + +1.2 464,011 - -0.2 464,012 + -0.5 464,032 - -1.9 464,103 + +0.3 464,103 + -0.7 464,105 - +0.8 464,105 - -0.1 464,105 - +2.4 464,106 + -0.9 464,106 + -1.4 464,198 - MMP_RS02475 0.27 +1.1 464,199 + MMP_RS02475 0.28 +0.5 464,236 - MMP_RS02475 0.42 +0.6 464,364 + -0.7 464,455 - +1.4 464,676 + MMP_RS02480 0.38 -1.3 464,825 - MMP_RS02480 0.67 -1.0 465,306 - MMP_RS02490 0.49 -0.7 465,306 - MMP_RS02490 0.49 -3.1 465,307 + MMP_RS02490 0.49 +0.1 465,432 - +0.9 465,679 + MMP_RS02495 0.68 -2.2 465,682 - MMP_RS02495 0.69 -0.6 465,851 - -0.4
Or see this region's nucleotide sequence