Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02230

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02225 and MMP_RS02230 are separated by 142 nucleotidesMMP_RS02230 and MMP_RS08940 are separated by 33 nucleotidesMMP_RS08940 and MMP_RS02235 are separated by 195 nucleotides MMP_RS02225: MMP_RS02225 - carbohydrate kinase family protein, at 419,415 to 420,323 _RS02225 MMP_RS02230: MMP_RS02230 - sodium-dependent transporter, at 420,466 to 421,977 _RS02230 MMP_RS08940: MMP_RS08940 - MetS family NSS transporter small subunit, at 422,011 to 422,091 _RS08940 MMP_RS02235: MMP_RS02235 - CBS domain-containing protein, at 422,287 to 423,252 _RS02235 Position (kb) 420 421 422Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 419.594 kb on + strand, within MMP_RS02225at 419.640 kb on - strand, within MMP_RS02225at 419.812 kb on - strand, within MMP_RS02225at 419.813 kb on + strand, within MMP_RS02225at 419.914 kb on - strand, within MMP_RS02225at 419.967 kb on + strand, within MMP_RS02225at 420.047 kb on + strand, within MMP_RS02225at 420.080 kb on + strand, within MMP_RS02225at 420.081 kb on - strand, within MMP_RS02225at 420.352 kb on - strandat 420.408 kb on + strandat 420.414 kb on + strandat 420.414 kb on + strandat 420.750 kb on + strand, within MMP_RS02230at 420.792 kb on + strand, within MMP_RS02230at 420.793 kb on - strand, within MMP_RS02230at 420.855 kb on - strand, within MMP_RS02230at 420.898 kb on + strand, within MMP_RS02230at 420.930 kb on + strand, within MMP_RS02230at 420.943 kb on - strand, within MMP_RS02230at 420.943 kb on - strand, within MMP_RS02230at 420.943 kb on - strand, within MMP_RS02230at 421.078 kb on - strand, within MMP_RS02230at 421.107 kb on + strand, within MMP_RS02230at 421.116 kb on - strand, within MMP_RS02230at 421.326 kb on - strand, within MMP_RS02230at 421.359 kb on + strand, within MMP_RS02230at 421.409 kb on - strand, within MMP_RS02230at 421.410 kb on + strand, within MMP_RS02230at 421.410 kb on + strand, within MMP_RS02230at 421.422 kb on + strand, within MMP_RS02230at 421.615 kb on - strand, within MMP_RS02230at 421.784 kb on + strand, within MMP_RS02230at 421.983 kb on - strandat 422.009 kb on - strandat 422.010 kb on + strandat 422.036 kb on - strand, within MMP_RS08940at 422.089 kb on - strandat 422.090 kb on + strandat 422.092 kb on - strandat 422.093 kb on + strandat 422.160 kb on - strandat 422.163 kb on + strandat 422.181 kb on - strandat 422.227 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.233 kb on + strandat 422.233 kb on + strandat 422.234 kb on - strandat 422.235 kb on + strandat 422.241 kb on - strandat 422.291 kb on - strandat 422.292 kb on + strandat 422.321 kb on - strandat 422.323 kb on - strandat 422.323 kb on - strandat 422.324 kb on + strandat 422.324 kb on + strandat 422.325 kb on - strandat 422.325 kb on - strandat 422.325 kb on - strandat 422.326 kb on + strandat 422.326 kb on + strandat 422.326 kb on + strandat 422.352 kb on - strandat 422.356 kb on - strandat 422.356 kb on - strandat 422.357 kb on + strandat 422.357 kb on + strandat 422.360 kb on - strandat 422.368 kb on - strandat 422.368 kb on - strandat 422.372 kb on - strandat 422.376 kb on - strandat 422.376 kb on - strandat 422.456 kb on - strand, within MMP_RS02235at 422.456 kb on - strand, within MMP_RS02235at 422.457 kb on + strand, within MMP_RS02235at 422.471 kb on - strand, within MMP_RS02235at 422.472 kb on + strand, within MMP_RS02235at 422.518 kb on + strand, within MMP_RS02235at 422.554 kb on + strand, within MMP_RS02235at 422.623 kb on + strand, within MMP_RS02235at 422.651 kb on - strand, within MMP_RS02235at 422.794 kb on + strand, within MMP_RS02235at 422.829 kb on - strand, within MMP_RS02235at 422.863 kb on - strand, within MMP_RS02235at 422.938 kb on - strand, within MMP_RS02235at 422.938 kb on - strand, within MMP_RS02235

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
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419,594 + MMP_RS02225 0.20 -1.0
419,640 - MMP_RS02225 0.25 -1.5
419,812 - MMP_RS02225 0.44 -2.2
419,813 + MMP_RS02225 0.44 -0.5
419,914 - MMP_RS02225 0.55 -1.0
419,967 + MMP_RS02225 0.61 +1.1
420,047 + MMP_RS02225 0.70 +0.4
420,080 + MMP_RS02225 0.73 +0.3
420,081 - MMP_RS02225 0.73 -0.6
420,352 - -0.6
420,408 + -1.5
420,414 + +0.0
420,414 + +0.2
420,750 + MMP_RS02230 0.19 -1.4
420,792 + MMP_RS02230 0.22 -1.0
420,793 - MMP_RS02230 0.22 -0.4
420,855 - MMP_RS02230 0.26 -0.1
420,898 + MMP_RS02230 0.29 -3.3
420,930 + MMP_RS02230 0.31 -0.0
420,943 - MMP_RS02230 0.32 -0.8
420,943 - MMP_RS02230 0.32 -0.8
420,943 - MMP_RS02230 0.32 -1.4
421,078 - MMP_RS02230 0.40 -0.3
421,107 + MMP_RS02230 0.42 -0.6
421,116 - MMP_RS02230 0.43 -0.1
421,326 - MMP_RS02230 0.57 -0.8
421,359 + MMP_RS02230 0.59 -1.9
421,409 - MMP_RS02230 0.62 -0.2
421,410 + MMP_RS02230 0.62 -0.1
421,410 + MMP_RS02230 0.62 -0.5
421,422 + MMP_RS02230 0.63 -1.1
421,615 - MMP_RS02230 0.76 +0.5
421,784 + MMP_RS02230 0.87 -2.8
421,983 - +0.7
422,009 - +0.8
422,010 + -0.7
422,036 - MMP_RS08940 0.31 -1.2
422,089 - +2.2
422,090 + -0.3
422,092 - -2.4
422,093 + -1.4
422,160 - -0.8
422,163 + +1.5
422,181 - -0.0
422,227 - -1.2
422,232 - -3.4
422,232 - -0.4
422,232 - -3.9
422,232 - -0.7
422,232 - -0.7
422,233 + -2.2
422,233 + +0.3
422,234 - -1.4
422,235 + -1.7
422,241 - -1.0
422,291 - -1.3
422,292 + -3.8
422,321 - +0.7
422,323 - -1.3
422,323 - -3.9
422,324 + -3.1
422,324 + +0.7
422,325 - -1.9
422,325 - -1.1
422,325 - -2.3
422,326 + -1.5
422,326 + -1.7
422,326 + -0.9
422,352 - -1.7
422,356 - -2.3
422,356 - -2.0
422,357 + -2.5
422,357 + -0.9
422,360 - -5.2
422,368 - -3.1
422,368 - +0.7
422,372 - -3.6
422,376 - -1.6
422,376 - -1.6
422,456 - MMP_RS02235 0.17 -2.3
422,456 - MMP_RS02235 0.17 -1.3
422,457 + MMP_RS02235 0.18 -2.2
422,471 - MMP_RS02235 0.19 -1.1
422,472 + MMP_RS02235 0.19 -0.9
422,518 + MMP_RS02235 0.24 -4.0
422,554 + MMP_RS02235 0.28 -2.6
422,623 + MMP_RS02235 0.35 -2.3
422,651 - MMP_RS02235 0.38 -3.0
422,794 + MMP_RS02235 0.52 -1.8
422,829 - MMP_RS02235 0.56 -1.1
422,863 - MMP_RS02235 0.60 -1.3
422,938 - MMP_RS02235 0.67 -5.6
422,938 - MMP_RS02235 0.67 -1.7

Or see this region's nucleotide sequence