Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02020

Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS02015 and MMP_RS02020 are separated by 5 nucleotidesMMP_RS02020 and MMP_RS02025 are separated by 4 nucleotides MMP_RS02015: MMP_RS02015 - amidohydrolase, at 374,873 to 376,156 _RS02015 MMP_RS02020: MMP_RS02020 - gamma-glutamylcyclotransferase, at 376,162 to 376,485 _RS02020 MMP_RS02025: MMP_RS02025 - DNA-directed DNA polymerase, at 376,490 to 378,844 _RS02025 Position (kb) 376 377Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 375.479 kb on - strand, within MMP_RS02015at 375.480 kb on + strand, within MMP_RS02015at 375.518 kb on - strand, within MMP_RS02015at 375.626 kb on + strand, within MMP_RS02015at 375.665 kb on - strand, within MMP_RS02015at 375.667 kb on - strand, within MMP_RS02015at 375.835 kb on + strand, within MMP_RS02015at 376.049 kb on + strandat 376.127 kb on + strandat 376.131 kb on - strandat 376.132 kb on + strandat 376.179 kb on + strandat 376.221 kb on - strand, within MMP_RS02020at 376.300 kb on - strand, within MMP_RS02020at 376.318 kb on + strand, within MMP_RS02020at 376.385 kb on - strand, within MMP_RS02020at 376.479 kb on + strandat 376.568 kb on - strandat 376.679 kb on - strandat 376.682 kb on + strandat 376.682 kb on + strandat 376.691 kb on - strandat 376.691 kb on - strandat 376.691 kb on - strandat 376.730 kb on - strand, within MMP_RS02025at 376.768 kb on - strand, within MMP_RS02025at 376.789 kb on - strand, within MMP_RS02025at 376.974 kb on + strand, within MMP_RS02025at 377.239 kb on + strand, within MMP_RS02025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
remove
375,479 - MMP_RS02015 0.47 +0.9
375,480 + MMP_RS02015 0.47 -0.2
375,518 - MMP_RS02015 0.50 +0.8
375,626 + MMP_RS02015 0.59 +0.9
375,665 - MMP_RS02015 0.62 +0.6
375,667 - MMP_RS02015 0.62 -0.3
375,835 + MMP_RS02015 0.75 +2.0
376,049 + +0.5
376,127 + +1.2
376,131 - -1.3
376,132 + +0.5
376,179 + -1.9
376,221 - MMP_RS02020 0.18 -1.3
376,300 - MMP_RS02020 0.43 -0.1
376,318 + MMP_RS02020 0.48 -1.6
376,385 - MMP_RS02020 0.69 -0.1
376,479 + +0.0
376,568 - +0.5
376,679 - -0.1
376,682 + +0.7
376,682 + -2.0
376,691 - -1.9
376,691 - +6.2
376,691 - -0.2
376,730 - MMP_RS02025 0.10 -0.7
376,768 - MMP_RS02025 0.12 +0.7
376,789 - MMP_RS02025 0.13 +0.4
376,974 + MMP_RS02025 0.21 -0.2
377,239 + MMP_RS02025 0.32 +3.0

Or see this region's nucleotide sequence