Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01880 and MMP_RS01885 overlap by 1 nucleotides MMP_RS01885 and MMP_RS01890 are separated by 17 nucleotides MMP_RS01890 and MMP_RS01895 are separated by 23 nucleotides
MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515
_RS01880
MMP_RS01885: MMP_RS01885 - Gfo/Idh/MocA family oxidoreductase, at 347,515 to 348,450
_RS01885
MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775
_RS01890
MMP_RS01895: MMP_RS01895 - flippase, at 349,799 to 351,034
_RS01895
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 347.474 kb on - strand at 347.475 kb on + strand at 347.477 kb on + strand at 347.510 kb on + strand at 347.683 kb on - strand, within MMP_RS01885 at 347.685 kb on - strand, within MMP_RS01885 at 347.760 kb on + strand, within MMP_RS01885 at 347.792 kb on - strand, within MMP_RS01885 at 347.892 kb on - strand, within MMP_RS01885 at 347.914 kb on + strand, within MMP_RS01885 at 348.070 kb on + strand, within MMP_RS01885 at 348.156 kb on - strand, within MMP_RS01885 at 348.161 kb on - strand, within MMP_RS01885 at 348.161 kb on - strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.181 kb on + strand, within MMP_RS01885 at 348.183 kb on - strand, within MMP_RS01885 at 348.184 kb on + strand, within MMP_RS01885 at 348.184 kb on + strand, within MMP_RS01885 at 348.213 kb on + strand, within MMP_RS01885 at 348.217 kb on + strand, within MMP_RS01885 at 348.241 kb on - strand, within MMP_RS01885 at 348.273 kb on + strand, within MMP_RS01885 at 348.274 kb on - strand, within MMP_RS01885 at 348.275 kb on + strand, within MMP_RS01885 at 348.557 kb on - strand at 348.563 kb on + strand at 348.724 kb on - strand, within MMP_RS01890 at 348.725 kb on + strand, within MMP_RS01890 at 348.771 kb on + strand, within MMP_RS01890 at 348.775 kb on - strand, within MMP_RS01890 at 348.971 kb on - strand, within MMP_RS01890 at 349.041 kb on - strand, within MMP_RS01890 at 349.268 kb on - strand, within MMP_RS01890 at 349.294 kb on - strand, within MMP_RS01890 at 349.370 kb on + strand, within MMP_RS01890 at 349.384 kb on - strand, within MMP_RS01890 at 349.586 kb on + strand, within MMP_RS01890 at 349.691 kb on + strand at 349.709 kb on - strand at 349.709 kb on - strand at 349.710 kb on + strand at 349.713 kb on + strand at 349.754 kb on - strand at 349.754 kb on - strand at 349.774 kb on + strand at 349.825 kb on - strand at 349.862 kb on + strand at 349.867 kb on - strand at 349.888 kb on + strand at 349.939 kb on + strand, within MMP_RS01895 at 350.028 kb on + strand, within MMP_RS01895 at 350.035 kb on - strand, within MMP_RS01895 at 350.035 kb on - strand, within MMP_RS01895 at 350.035 kb on - strand, within MMP_RS01895 at 350.036 kb on + strand, within MMP_RS01895 at 350.094 kb on - strand, within MMP_RS01895 at 350.132 kb on + strand, within MMP_RS01895 at 350.151 kb on + strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.234 kb on + strand, within MMP_RS01895 at 350.234 kb on + strand, within MMP_RS01895 at 350.236 kb on + strand, within MMP_RS01895 at 350.239 kb on - strand, within MMP_RS01895 at 350.239 kb on - strand, within MMP_RS01895 at 350.240 kb on + strand, within MMP_RS01895 at 350.240 kb on + strand, within MMP_RS01895 at 350.257 kb on + strand, within MMP_RS01895 at 350.261 kb on + strand, within MMP_RS01895 at 350.326 kb on - strand, within MMP_RS01895 at 350.327 kb on + strand, within MMP_RS01895 at 350.356 kb on - strand, within MMP_RS01895 at 350.360 kb on - strand, within MMP_RS01895 at 350.362 kb on - strand, within MMP_RS01895 at 350.362 kb on - strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.366 kb on - strand, within MMP_RS01895 at 350.367 kb on + strand, within MMP_RS01895 at 350.367 kb on + strand, within MMP_RS01895 at 350.378 kb on - strand, within MMP_RS01895 at 350.422 kb on - strand, within MMP_RS01895 at 350.456 kb on - strand, within MMP_RS01895 at 350.456 kb on - strand, within MMP_RS01895 at 350.456 kb on - strand, within MMP_RS01895 at 350.457 kb on + strand, within MMP_RS01895 at 350.460 kb on - strand, within MMP_RS01895 at 350.470 kb on - strand, within MMP_RS01895 at 350.474 kb on - strand, within MMP_RS01895 at 350.477 kb on - strand, within MMP_RS01895 at 350.477 kb on - strand, within MMP_RS01895 at 350.489 kb on + strand, within MMP_RS01895 at 350.532 kb on - strand, within MMP_RS01895 at 350.533 kb on + strand, within MMP_RS01895 at 350.546 kb on - strand, within MMP_RS01895 at 350.571 kb on - strand, within MMP_RS01895 at 350.587 kb on + strand, within MMP_RS01895 at 350.589 kb on - strand, within MMP_RS01895 at 350.589 kb on - strand, within MMP_RS01895 at 350.590 kb on + strand, within MMP_RS01895 at 350.657 kb on + strand, within MMP_RS01895 at 350.668 kb on - strand, within MMP_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 347,474 - +4.5 347,475 + -2.1 347,477 + +0.4 347,510 + +1.5 347,683 - MMP_RS01885 0.18 -2.5 347,685 - MMP_RS01885 0.18 -1.1 347,760 + MMP_RS01885 0.26 +3.6 347,792 - MMP_RS01885 0.30 +4.2 347,892 - MMP_RS01885 0.40 -2.2 347,914 + MMP_RS01885 0.43 -0.1 348,070 + MMP_RS01885 0.59 +6.0 348,156 - MMP_RS01885 0.68 +3.9 348,161 - MMP_RS01885 0.69 +1.0 348,161 - MMP_RS01885 0.69 +4.1 348,162 + MMP_RS01885 0.69 -2.1 348,162 + MMP_RS01885 0.69 +3.3 348,162 + MMP_RS01885 0.69 +2.8 348,181 + MMP_RS01885 0.71 -0.8 348,183 - MMP_RS01885 0.71 +1.7 348,184 + MMP_RS01885 0.71 -1.5 348,184 + MMP_RS01885 0.71 +3.2 348,213 + MMP_RS01885 0.75 +0.4 348,217 + MMP_RS01885 0.75 -0.6 348,241 - MMP_RS01885 0.78 +0.0 348,273 + MMP_RS01885 0.81 -1.7 348,274 - MMP_RS01885 0.81 -0.3 348,275 + MMP_RS01885 0.81 -1.9 348,557 - +2.4 348,563 + +2.4 348,724 - MMP_RS01890 0.20 +2.6 348,725 + MMP_RS01890 0.20 +0.7 348,771 + MMP_RS01890 0.23 +2.1 348,775 - MMP_RS01890 0.23 -2.4 348,971 - MMP_RS01890 0.38 -1.3 349,041 - MMP_RS01890 0.44 +4.8 349,268 - MMP_RS01890 0.61 -2.7 349,294 - MMP_RS01890 0.63 +1.1 349,370 + MMP_RS01890 0.69 +1.3 349,384 - MMP_RS01890 0.70 +4.1 349,586 + MMP_RS01890 0.85 +5.4 349,691 + +3.4 349,709 - -0.7 349,709 - +1.9 349,710 + +0.1 349,713 + +3.6 349,754 - -0.7 349,754 - -0.7 349,774 + +1.1 349,825 - -1.7 349,862 + +4.6 349,867 - +2.5 349,888 + -2.8 349,939 + MMP_RS01895 0.11 +0.5 350,028 + MMP_RS01895 0.19 -1.4 350,035 - MMP_RS01895 0.19 +1.5 350,035 - MMP_RS01895 0.19 +1.1 350,035 - MMP_RS01895 0.19 -3.4 350,036 + MMP_RS01895 0.19 +0.6 350,094 - MMP_RS01895 0.24 +1.4 350,132 + MMP_RS01895 0.27 +1.1 350,151 + MMP_RS01895 0.28 +3.7 350,233 - MMP_RS01895 0.35 -3.6 350,233 - MMP_RS01895 0.35 +2.2 350,233 - MMP_RS01895 0.35 +0.6 350,233 - MMP_RS01895 0.35 -1.1 350,234 + MMP_RS01895 0.35 +3.1 350,234 + MMP_RS01895 0.35 -0.6 350,236 + MMP_RS01895 0.35 +1.8 350,239 - MMP_RS01895 0.36 +0.4 350,239 - MMP_RS01895 0.36 +0.3 350,240 + MMP_RS01895 0.36 +3.4 350,240 + MMP_RS01895 0.36 -1.5 350,257 + MMP_RS01895 0.37 +1.1 350,261 + MMP_RS01895 0.37 +1.5 350,326 - MMP_RS01895 0.43 -1.0 350,327 + MMP_RS01895 0.43 +1.5 350,356 - MMP_RS01895 0.45 +0.7 350,360 - MMP_RS01895 0.45 -0.4 350,362 - MMP_RS01895 0.46 +0.4 350,362 - MMP_RS01895 0.46 -0.9 350,363 + MMP_RS01895 0.46 +0.3 350,363 + MMP_RS01895 0.46 +1.6 350,363 + MMP_RS01895 0.46 +1.6 350,363 + MMP_RS01895 0.46 -0.4 350,366 - MMP_RS01895 0.46 +1.3 350,367 + MMP_RS01895 0.46 +2.5 350,367 + MMP_RS01895 0.46 -3.2 350,378 - MMP_RS01895 0.47 +1.7 350,422 - MMP_RS01895 0.50 +2.7 350,456 - MMP_RS01895 0.53 -1.2 350,456 - MMP_RS01895 0.53 +2.0 350,456 - MMP_RS01895 0.53 +1.2 350,457 + MMP_RS01895 0.53 -0.6 350,460 - MMP_RS01895 0.53 +0.1 350,470 - MMP_RS01895 0.54 +1.7 350,474 - MMP_RS01895 0.55 -2.0 350,477 - MMP_RS01895 0.55 -1.1 350,477 - MMP_RS01895 0.55 +0.5 350,489 + MMP_RS01895 0.56 -3.5 350,532 - MMP_RS01895 0.59 +1.2 350,533 + MMP_RS01895 0.59 -1.1 350,546 - MMP_RS01895 0.60 -3.6 350,571 - MMP_RS01895 0.62 +1.2 350,587 + MMP_RS01895 0.64 -1.1 350,589 - MMP_RS01895 0.64 +0.6 350,589 - MMP_RS01895 0.64 -1.4 350,590 + MMP_RS01895 0.64 +0.5 350,657 + MMP_RS01895 0.69 +0.2 350,668 - MMP_RS01895 0.70 +1.4
Or see this region's nucleotide sequence