Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01845 and MMP_RS01850 are separated by 124 nucleotides MMP_RS01850 and MMP_RS01855 are separated by 42 nucleotides
MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472
_RS01845
MMP_RS01850: MMP_RS01850 - phosphate ABC transporter substrate-binding protein, at 341,597 to 342,424
_RS01850
MMP_RS01855: MMP_RS01855 - 2-hydroxyacyl-CoA dehydratase family protein, at 342,467 to 343,588
_RS01855
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.708 kb on - strand, within MMP_RS01845 at 340.711 kb on + strand, within MMP_RS01845 at 340.714 kb on + strand, within MMP_RS01845 at 340.726 kb on - strand, within MMP_RS01845 at 340.763 kb on - strand, within MMP_RS01845 at 340.763 kb on - strand, within MMP_RS01845 at 340.769 kb on - strand, within MMP_RS01845 at 340.769 kb on - strand, within MMP_RS01845 at 340.774 kb on + strand, within MMP_RS01845 at 340.781 kb on - strand, within MMP_RS01845 at 340.790 kb on - strand, within MMP_RS01845 at 340.791 kb on + strand, within MMP_RS01845 at 340.848 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.888 kb on - strand, within MMP_RS01845 at 340.889 kb on + strand, within MMP_RS01845 at 340.918 kb on - strand, within MMP_RS01845 at 341.012 kb on - strand, within MMP_RS01845 at 341.044 kb on + strand, within MMP_RS01845 at 341.070 kb on - strand, within MMP_RS01845 at 341.132 kb on + strand, within MMP_RS01845 at 341.133 kb on - strand, within MMP_RS01845 at 341.139 kb on - strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.140 kb on + strand, within MMP_RS01845 at 341.142 kb on + strand, within MMP_RS01845 at 341.181 kb on + strand, within MMP_RS01845 at 341.218 kb on - strand, within MMP_RS01845 at 341.219 kb on + strand, within MMP_RS01845 at 341.221 kb on + strand, within MMP_RS01845 at 341.249 kb on + strand, within MMP_RS01845 at 341.330 kb on - strand, within MMP_RS01845 at 341.330 kb on - strand, within MMP_RS01845 at 341.472 kb on - strand at 341.472 kb on - strand at 341.475 kb on - strand at 341.475 kb on - strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.476 kb on + strand at 341.501 kb on - strand at 341.501 kb on - strand at 341.603 kb on - strand at 341.658 kb on - strand at 341.780 kb on - strand, within MMP_RS01850 at 341.780 kb on - strand, within MMP_RS01850 at 341.781 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.806 kb on + strand, within MMP_RS01850 at 341.910 kb on + strand, within MMP_RS01850 at 341.942 kb on + strand, within MMP_RS01850 at 341.972 kb on - strand, within MMP_RS01850 at 342.047 kb on + strand, within MMP_RS01850 at 342.247 kb on - strand, within MMP_RS01850 at 342.265 kb on + strand, within MMP_RS01850 at 342.393 kb on + strand at 342.627 kb on - strand, within MMP_RS01855 at 342.628 kb on + strand, within MMP_RS01855 at 342.631 kb on + strand, within MMP_RS01855 at 342.632 kb on - strand, within MMP_RS01855 at 342.727 kb on + strand, within MMP_RS01855 at 342.823 kb on - strand, within MMP_RS01855 at 342.832 kb on - strand, within MMP_RS01855 at 342.833 kb on + strand, within MMP_RS01855 at 342.971 kb on - strand, within MMP_RS01855 at 342.972 kb on + strand, within MMP_RS01855 at 343.318 kb on + strand, within MMP_RS01855 at 343.403 kb on - strand, within MMP_RS01855
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 340,708 - MMP_RS01845 0.13 +0.8 340,711 + MMP_RS01845 0.14 +0.2 340,714 + MMP_RS01845 0.14 +1.8 340,726 - MMP_RS01845 0.15 +1.3 340,763 - MMP_RS01845 0.20 -0.6 340,763 - MMP_RS01845 0.20 +1.7 340,769 - MMP_RS01845 0.20 +1.7 340,769 - MMP_RS01845 0.20 -0.3 340,774 + MMP_RS01845 0.21 +1.8 340,781 - MMP_RS01845 0.22 -1.3 340,790 - MMP_RS01845 0.23 -0.1 340,791 + MMP_RS01845 0.23 -2.1 340,848 - MMP_RS01845 0.29 +1.0 340,888 - MMP_RS01845 0.34 +0.2 340,888 - MMP_RS01845 0.34 -0.1 340,888 - MMP_RS01845 0.34 +2.1 340,889 + MMP_RS01845 0.34 -0.7 340,918 - MMP_RS01845 0.37 +0.2 341,012 - MMP_RS01845 0.48 +0.2 341,044 + MMP_RS01845 0.51 +1.6 341,070 - MMP_RS01845 0.54 +1.3 341,132 + MMP_RS01845 0.61 -0.2 341,133 - MMP_RS01845 0.61 -0.9 341,139 - MMP_RS01845 0.62 +2.1 341,140 + MMP_RS01845 0.62 +2.1 341,140 + MMP_RS01845 0.62 -1.1 341,140 + MMP_RS01845 0.62 +1.5 341,142 + MMP_RS01845 0.62 -0.2 341,181 + MMP_RS01845 0.67 -0.5 341,218 - MMP_RS01845 0.71 -1.1 341,219 + MMP_RS01845 0.71 -1.1 341,221 + MMP_RS01845 0.71 +0.4 341,249 + MMP_RS01845 0.75 -0.7 341,330 - MMP_RS01845 0.84 +0.8 341,330 - MMP_RS01845 0.84 +1.1 341,472 - +1.9 341,472 - -1.9 341,475 - +1.5 341,475 - -0.7 341,476 + -0.1 341,476 + +0.8 341,476 + -1.1 341,476 + +0.7 341,501 - +0.6 341,501 - +0.2 341,603 - +0.8 341,658 - -1.6 341,780 - MMP_RS01850 0.22 +1.0 341,780 - MMP_RS01850 0.22 +2.1 341,781 + MMP_RS01850 0.22 -2.7 341,806 + MMP_RS01850 0.25 +1.0 341,806 + MMP_RS01850 0.25 +0.1 341,910 + MMP_RS01850 0.38 +0.3 341,942 + MMP_RS01850 0.42 +1.4 341,972 - MMP_RS01850 0.45 +0.4 342,047 + MMP_RS01850 0.54 -2.7 342,247 - MMP_RS01850 0.79 +0.9 342,265 + MMP_RS01850 0.81 +2.7 342,393 + +0.9 342,627 - MMP_RS01855 0.14 +1.2 342,628 + MMP_RS01855 0.14 -1.7 342,631 + MMP_RS01855 0.15 +1.2 342,632 - MMP_RS01855 0.15 +1.1 342,727 + MMP_RS01855 0.23 -0.2 342,823 - MMP_RS01855 0.32 +0.3 342,832 - MMP_RS01855 0.33 +0.2 342,833 + MMP_RS01855 0.33 +2.0 342,971 - MMP_RS01855 0.45 -0.3 342,972 + MMP_RS01855 0.45 +0.7 343,318 + MMP_RS01855 0.76 -1.0 343,403 - MMP_RS01855 0.83 +0.4
Or see this region's nucleotide sequence