Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01610 and MMP_RS01615 overlap by 1 nucleotides MMP_RS01615 and MMP_RS01620 are separated by 198 nucleotides MMP_RS01620 and MMP_RS01625 are separated by 14 nucleotides MMP_RS01625 and MMP_RS01630 are separated by 65 nucleotides
MMP_RS01610: MMP_RS01610 - hypothetical protein, at 300,053 to 300,514
_RS01610
MMP_RS01615: MMP_RS01615 - hydrogenase maturation nickel metallochaperone HypA, at 300,514 to 300,894
_RS01615
MMP_RS01620: MMP_RS01620 - hypothetical protein, at 301,093 to 301,452
_RS01620
MMP_RS01625: MMP_RS01625 - rubredoxin, at 301,467 to 301,604
_RS01625
MMP_RS01630: MMP_RS01630 - N-glycosylase/DNA lyase, at 301,670 to 302,428
_RS01630
Position (kb) 301
302 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 300.178 kb on + strand, within MMP_RS01610 at 300.252 kb on - strand, within MMP_RS01610 at 300.256 kb on - strand, within MMP_RS01610 at 300.256 kb on - strand, within MMP_RS01610 at 300.351 kb on - strand, within MMP_RS01610 at 300.496 kb on - strand at 300.596 kb on - strand at 300.615 kb on + strand at 300.645 kb on + strand at 300.829 kb on + strand at 300.852 kb on - strand at 300.857 kb on - strand at 300.860 kb on - strand at 300.861 kb on + strand at 300.909 kb on - strand at 300.909 kb on - strand at 300.936 kb on - strand at 300.938 kb on - strand at 300.938 kb on - strand at 300.939 kb on + strand at 300.941 kb on + strand at 300.941 kb on + strand at 300.943 kb on - strand at 300.950 kb on - strand at 300.950 kb on - strand at 301.035 kb on - strand at 301.036 kb on + strand at 301.037 kb on - strand at 301.038 kb on + strand at 301.190 kb on - strand, within MMP_RS01620 at 301.191 kb on + strand, within MMP_RS01620 at 301.264 kb on + strand, within MMP_RS01620 at 301.350 kb on - strand, within MMP_RS01620 at 301.350 kb on - strand, within MMP_RS01620 at 301.417 kb on - strand at 301.432 kb on + strand at 301.441 kb on + strand at 301.530 kb on - strand, within MMP_RS01625 at 301.568 kb on + strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.569 kb on - strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.570 kb on + strand, within MMP_RS01625 at 301.582 kb on + strand, within MMP_RS01625 at 301.604 kb on - strand at 301.604 kb on - strand at 301.642 kb on - strand at 301.651 kb on + strand at 301.671 kb on - strand at 301.672 kb on + strand at 301.692 kb on + strand at 301.777 kb on - strand, within MMP_RS01630 at 302.105 kb on - strand, within MMP_RS01630 at 302.233 kb on - strand, within MMP_RS01630 at 302.237 kb on + strand, within MMP_RS01630 at 302.252 kb on - strand, within MMP_RS01630 at 302.338 kb on - strand, within MMP_RS01630 at 302.408 kb on - strand at 302.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 300,178 + MMP_RS01610 0.27 -2.4 300,252 - MMP_RS01610 0.43 -1.3 300,256 - MMP_RS01610 0.44 -0.3 300,256 - MMP_RS01610 0.44 -1.0 300,351 - MMP_RS01610 0.65 -0.4 300,496 - -0.5 300,596 - +0.2 300,615 + -2.2 300,645 + +0.4 300,829 + -1.3 300,852 - -2.5 300,857 - -1.1 300,860 - -2.7 300,861 + -2.5 300,909 - +2.3 300,909 - +0.3 300,936 - -1.7 300,938 - +0.9 300,938 - -1.8 300,939 + -0.7 300,941 + -0.2 300,941 + -0.1 300,943 - -1.6 300,950 - +0.7 300,950 - +0.4 301,035 - -0.2 301,036 + +2.0 301,037 - -0.6 301,038 + +2.6 301,190 - MMP_RS01620 0.27 -3.9 301,191 + MMP_RS01620 0.27 -0.2 301,264 + MMP_RS01620 0.47 -0.1 301,350 - MMP_RS01620 0.71 -1.1 301,350 - MMP_RS01620 0.71 -1.9 301,417 - -0.4 301,432 + +0.7 301,441 + +0.5 301,530 - MMP_RS01625 0.46 -0.9 301,568 + MMP_RS01625 0.73 -2.3 301,569 - MMP_RS01625 0.74 +0.9 301,569 - MMP_RS01625 0.74 +0.7 301,569 - MMP_RS01625 0.74 +0.5 301,569 - MMP_RS01625 0.74 +0.0 301,569 - MMP_RS01625 0.74 +0.1 301,569 - MMP_RS01625 0.74 -0.6 301,569 - MMP_RS01625 0.74 -0.2 301,569 - MMP_RS01625 0.74 +1.1 301,569 - MMP_RS01625 0.74 +0.3 301,569 - MMP_RS01625 0.74 +1.2 301,569 - MMP_RS01625 0.74 +1.3 301,569 - MMP_RS01625 0.74 -1.3 301,569 - MMP_RS01625 0.74 +0.9 301,569 - MMP_RS01625 0.74 -0.9 301,569 - MMP_RS01625 0.74 +0.6 301,569 - MMP_RS01625 0.74 -0.2 301,569 - MMP_RS01625 0.74 +1.6 301,570 + MMP_RS01625 0.75 +1.3 301,570 + MMP_RS01625 0.75 +0.7 301,570 + MMP_RS01625 0.75 +2.0 301,570 + MMP_RS01625 0.75 +0.3 301,570 + MMP_RS01625 0.75 +4.3 301,570 + MMP_RS01625 0.75 +0.5 301,570 + MMP_RS01625 0.75 -1.3 301,570 + MMP_RS01625 0.75 -1.3 301,570 + MMP_RS01625 0.75 +1.2 301,570 + MMP_RS01625 0.75 -1.7 301,570 + MMP_RS01625 0.75 +0.7 301,582 + MMP_RS01625 0.83 -0.3 301,604 - +0.8 301,604 - +1.0 301,642 - +0.3 301,651 + +1.0 301,671 - +1.0 301,672 + +1.5 301,692 + -1.1 301,777 - MMP_RS01630 0.14 -2.0 302,105 - MMP_RS01630 0.57 +0.5 302,233 - MMP_RS01630 0.74 -0.3 302,237 + MMP_RS01630 0.75 +0.5 302,252 - MMP_RS01630 0.77 -1.0 302,338 - MMP_RS01630 0.88 +1.5 302,408 - +1.0 302,447 - -1.5
Or see this region's nucleotide sequence