Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01365 and MMP_RS01370 are separated by 531 nucleotides MMP_RS01370 and MMP_RS01375 are separated by 142 nucleotides
MMP_RS01365: MMP_RS01365 - archaeal proteasome endopeptidase complex subunit alpha, at 252,275 to 253,054
_RS01365
MMP_RS01370: MMP_RS01370 - acetate--CoA ligase family protein, at 253,586 to 255,694
_RS01370
MMP_RS01375: MMP_RS01375 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 255,837 to 257,360
_RS01375
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 252.681 kb on - strand, within MMP_RS01365 at 252.681 kb on - strand, within MMP_RS01365 at 253.056 kb on - strand at 253.056 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.082 kb on + strand at 253.108 kb on - strand at 253.108 kb on - strand at 253.109 kb on + strand at 253.109 kb on + strand at 253.115 kb on - strand at 253.133 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.140 kb on + strand at 253.140 kb on + strand at 253.140 kb on + strand at 253.175 kb on - strand at 253.176 kb on + strand at 253.176 kb on + strand at 253.178 kb on + strand at 253.186 kb on + strand at 253.200 kb on - strand at 253.210 kb on - strand at 253.216 kb on - strand at 253.226 kb on - strand at 253.451 kb on + strand at 253.452 kb on - strand at 253.455 kb on + strand at 253.455 kb on + strand at 253.455 kb on + strand at 253.526 kb on - strand at 253.580 kb on + strand at 253.595 kb on - strand at 253.595 kb on - strand at 253.597 kb on - strand at 253.597 kb on - strand at 253.598 kb on + strand at 253.602 kb on + strand at 253.741 kb on - strand at 254.087 kb on - strand, within MMP_RS01370 at 254.088 kb on + strand, within MMP_RS01370 at 254.089 kb on - strand, within MMP_RS01370 at 254.089 kb on - strand, within MMP_RS01370 at 254.143 kb on - strand, within MMP_RS01370 at 254.156 kb on + strand, within MMP_RS01370 at 254.161 kb on - strand, within MMP_RS01370 at 254.162 kb on + strand, within MMP_RS01370 at 254.485 kb on - strand, within MMP_RS01370 at 254.496 kb on - strand, within MMP_RS01370 at 254.562 kb on + strand, within MMP_RS01370 at 254.579 kb on - strand, within MMP_RS01370 at 254.579 kb on - strand, within MMP_RS01370 at 254.601 kb on + strand, within MMP_RS01370 at 254.624 kb on + strand, within MMP_RS01370 at 254.624 kb on + strand, within MMP_RS01370 at 254.850 kb on + strand, within MMP_RS01370 at 254.910 kb on + strand, within MMP_RS01370 at 254.910 kb on + strand, within MMP_RS01370 at 254.994 kb on + strand, within MMP_RS01370 at 255.099 kb on - strand, within MMP_RS01370 at 255.099 kb on - strand, within MMP_RS01370 at 255.099 kb on - strand, within MMP_RS01370 at 255.172 kb on + strand, within MMP_RS01370 at 255.449 kb on - strand, within MMP_RS01370 at 255.475 kb on - strand, within MMP_RS01370 at 255.479 kb on - strand, within MMP_RS01370 at 255.547 kb on + strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.694 kb on - strand at 255.695 kb on + strand at 255.695 kb on + strand at 255.695 kb on + strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.696 kb on - strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.697 kb on + strand at 255.698 kb on - strand at 255.715 kb on - strand at 255.715 kb on - strand at 255.716 kb on + strand at 255.733 kb on - strand at 255.733 kb on - strand at 255.739 kb on - strand at 255.740 kb on + strand at 255.749 kb on - strand at 255.756 kb on + strand at 255.759 kb on - strand at 255.759 kb on - strand at 255.776 kb on + strand at 255.779 kb on + strand at 255.779 kb on + strand at 255.780 kb on - strand at 255.780 kb on - strand at 255.785 kb on + strand at 256.172 kb on + strand, within MMP_RS01375 at 256.200 kb on + strand, within MMP_RS01375 at 256.322 kb on - strand, within MMP_RS01375 at 256.358 kb on - strand, within MMP_RS01375 at 256.402 kb on - strand, within MMP_RS01375 at 256.418 kb on - strand, within MMP_RS01375 at 256.419 kb on + strand, within MMP_RS01375 at 256.450 kb on - strand, within MMP_RS01375 at 256.451 kb on + strand, within MMP_RS01375 at 256.455 kb on + strand, within MMP_RS01375 at 256.455 kb on + strand, within MMP_RS01375 at 256.490 kb on - strand, within MMP_RS01375 at 256.492 kb on - strand, within MMP_RS01375 at 256.493 kb on + strand, within MMP_RS01375 at 256.561 kb on + strand, within MMP_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 252,681 - MMP_RS01365 0.52 -0.8 252,681 - MMP_RS01365 0.52 -0.5 253,056 - -0.2 253,056 - -1.0 253,057 + -1.2 253,057 + -2.7 253,082 + +0.2 253,108 - +1.8 253,108 - +0.7 253,109 + -1.8 253,109 + +1.5 253,115 - -0.2 253,133 - +1.7 253,137 - -1.5 253,137 - -0.5 253,137 - +1.2 253,137 - +1.3 253,138 + +0.0 253,138 + +1.4 253,138 + +0.8 253,138 + -1.4 253,138 + -1.6 253,138 + +2.9 253,139 - -2.2 253,139 - +0.6 253,139 - -1.5 253,139 - +1.7 253,139 - +0.3 253,140 + +0.4 253,140 + +1.6 253,140 + +0.5 253,175 - +0.1 253,176 + +1.6 253,176 + +1.4 253,178 + +3.2 253,186 + -1.1 253,200 - +2.6 253,210 - +2.8 253,216 - +1.4 253,226 - +1.1 253,451 + +1.4 253,452 - -0.1 253,455 + +1.7 253,455 + +2.5 253,455 + +0.5 253,526 - -2.8 253,580 + +0.8 253,595 - +1.8 253,595 - +3.0 253,597 - +2.9 253,597 - -0.8 253,598 + +4.3 253,602 + +5.3 253,741 - +4.8 254,087 - MMP_RS01370 0.24 +5.9 254,088 + MMP_RS01370 0.24 +4.9 254,089 - MMP_RS01370 0.24 +5.3 254,089 - MMP_RS01370 0.24 -2.2 254,143 - MMP_RS01370 0.26 +5.6 254,156 + MMP_RS01370 0.27 +2.0 254,161 - MMP_RS01370 0.27 +2.6 254,162 + MMP_RS01370 0.27 +5.0 254,485 - MMP_RS01370 0.43 +4.5 254,496 - MMP_RS01370 0.43 +4.9 254,562 + MMP_RS01370 0.46 +6.1 254,579 - MMP_RS01370 0.47 +3.3 254,579 - MMP_RS01370 0.47 +6.4 254,601 + MMP_RS01370 0.48 -3.0 254,624 + MMP_RS01370 0.49 -2.1 254,624 + MMP_RS01370 0.49 +4.8 254,850 + MMP_RS01370 0.60 +4.3 254,910 + MMP_RS01370 0.63 +5.5 254,910 + MMP_RS01370 0.63 +6.5 254,994 + MMP_RS01370 0.67 +4.8 255,099 - MMP_RS01370 0.72 +2.4 255,099 - MMP_RS01370 0.72 +4.5 255,099 - MMP_RS01370 0.72 +4.1 255,172 + MMP_RS01370 0.75 +6.9 255,449 - MMP_RS01370 0.88 +4.9 255,475 - MMP_RS01370 0.90 +6.0 255,479 - MMP_RS01370 0.90 +6.8 255,547 + +4.5 255,694 - +5.3 255,694 - +5.1 255,694 - +6.7 255,694 - +7.1 255,694 - +6.3 255,695 + +4.6 255,695 + +5.0 255,695 + +2.7 255,696 - +6.0 255,696 - +6.1 255,696 - +3.7 255,696 - +7.1 255,696 - +6.5 255,696 - +5.4 255,696 - +5.2 255,696 - +5.3 255,696 - +5.4 255,697 + +5.4 255,697 + +6.0 255,697 + +2.8 255,697 + +5.7 255,697 + +6.1 255,697 + +6.3 255,697 + +5.2 255,697 + +5.2 255,697 + +4.9 255,697 + +4.6 255,698 - +6.7 255,715 - +4.8 255,715 - +6.4 255,716 + +4.9 255,733 - -0.1 255,733 - +5.0 255,739 - +4.3 255,740 + +6.2 255,749 - +3.8 255,756 + -1.3 255,759 - +5.8 255,759 - +5.4 255,776 + -0.4 255,779 + +4.7 255,779 + +4.8 255,780 - +5.9 255,780 - +2.3 255,785 + -0.6 256,172 + MMP_RS01375 0.22 -0.9 256,200 + MMP_RS01375 0.24 +0.2 256,322 - MMP_RS01375 0.32 +2.0 256,358 - MMP_RS01375 0.34 -1.0 256,402 - MMP_RS01375 0.37 +0.3 256,418 - MMP_RS01375 0.38 +2.1 256,419 + MMP_RS01375 0.38 +1.0 256,450 - MMP_RS01375 0.40 -0.9 256,451 + MMP_RS01375 0.40 +1.0 256,455 + MMP_RS01375 0.41 -0.3 256,455 + MMP_RS01375 0.41 -0.5 256,490 - MMP_RS01375 0.43 +0.5 256,492 - MMP_RS01375 0.43 -0.2 256,493 + MMP_RS01375 0.43 -1.7 256,561 + MMP_RS01375 0.48 -1.2
Or see this region's nucleotide sequence